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ONTOLOGY REPORT - ANNOTATIONS


Term:glycogen catabolic process
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Accession:GO:0005980 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.
Synonyms:exact_synonym: glycogen breakdown;   glycogen catabolism;   glycogen degradation;   glycogenolysis
 xref: MetaCyc:GLYCOCAT-PWY


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glycogen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb1 adrenoceptor beta 1 IDA RGD PMID:17911346 RGD:5129142 NCBI chr 1:277,537,585...277,538,985
Ensembl chr 1:277,537,585...277,538,985
JBrowse link
G Agl amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase involved_in IMP
IBA
IDA
PMID:21873635 RGD
GO_Central
PMID:9281456, PMID:21873635, PMID:15180797, PMID:11766064, PMID:6449198 RGD:1598779, RGD:13792537, RGD:1642741, RGD:2304191, RGD:1642743 NCBI chr 2:219,788,234...219,843,189
Ensembl chr 2:219,788,234...219,842,986
JBrowse link
G G6pc1 glucose-6-phosphatase catalytic subunit 1 acts_upstream_of_or_within ISO MGI:2387343 (MGI:1351534|PMID:10625614) RGD PMID:10625614 MGI:1351534 NCBI chr10:89,286,009...89,296,213
Ensembl chr10:89,285,855...89,296,213
JBrowse link
G Gaa alpha glucosidase acts_upstream_of_or_within
involved_in
IMP
ISO
IEA
IBA
IDA
MGI:2148550|MGI:2179955|MGI:2179960|MGI:2179961 (MGI:2136118|PMID:11328962), (MGI:2157196|PMID:11785984), (MGI:2179452|PMID:10838256)
GO_REF:0000107
(PMID:29061980), (PMID:9505277)
PMID:21873635
RGD
Ensembl
PMID:9505277 PMID:10838256 PMID:11328962 PMID:11785984 PMID:29061980, PMID:2193931, PMID:21873635, PMID:8710802 GO_REF:0000107 MGI:2136118 MGI:2157196 MGI:2179452, RGD:1599504, RGD:13792537, RGD:1599506 NCBI chr10:108,395,873...108,412,999
Ensembl chr10:108,395,860...108,413,059
JBrowse link
G Pfkm phosphofructokinase, muscle involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4356541 (MGI:4356361|PMID:19696889)
Ensembl
RGD
PMID:19696889 GO_REF:0000107 MGI:4356361 NCBI chr 7:139,702,066...139,722,132
Ensembl chr 7:139,685,573...139,722,132
JBrowse link
G Pygb glycogen phosphorylase B involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:16226229, PMID:21873635, PMID:11071367, PMID:10634496 RGD:1642804, RGD:13792537, RGD:2304126, RGD:1642809 NCBI chr 3:146,581,063...146,629,504
Ensembl chr 3:146,582,752...146,634,535
JBrowse link
G Pygl glycogen phosphorylase L involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:15152027, PMID:21873635, PMID:6449198, PMID:114169 RGD:1642805, RGD:13792537, RGD:1642743, RGD:2304128 NCBI chr 6:92,597,759...92,643,734
Ensembl chr 6:92,597,706...92,643,847
JBrowse link
G Pygm glycogen phosphorylase, muscle associated acts_upstream_of_or_within
involved_in
IDA
ISO
IEA
IBA
(MGI:3052259|PMID:15282316), (MGI:4844074|PMID:17689562)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:15282316 PMID:17689562, PMID:14674711, PMID:21873635, PMID:6449198, PMID:11692172, PMID:11071367, PMID:10572943 GO_REF:0000107 MGI:3052259 MGI:4844074, RGD:1599986, RGD:13792537, RGD:1642743, RGD:1599897, RGD:2304126, RGD:1642811 NCBI chr 1:221,756,325...221,771,142
Ensembl chr 1:221,756,286...221,771,143
JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO
ISS
(PMID:20810658)
GO_REF:0000024
RGD
GO_Central
PMID:20810658 GO_REF:0000024 NCBI chr14:16,976,355...16,979,760
Ensembl chr14:16,976,356...16,979,760
JBrowse link
glycophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:13,033,918...13,097,369
Ensembl chr 5:13,033,918...13,097,341
JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO
ISS
(PMID:20810658)
GO_REF:0000024
RGD
GO_Central
PMID:20810658 GO_REF:0000024 NCBI chr14:16,976,355...16,979,760
Ensembl chr14:16,976,356...16,979,760
JBrowse link
negative regulation of glycogen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adra1b adrenoceptor alpha 1B acts_upstream_of_or_within ISO MGI:2148638 (MGI:3027459|PMID:14581480) RGD PMID:14581480 MGI:3027459 NCBI chr10:29,392,762...29,450,644
Ensembl chr10:29,392,762...29,450,644
JBrowse link
G Ins2 insulin 2 involved_in ISO (PMID:381941) RGD PMID:381941 NCBI chr 1:215,856,967...215,858,034
Ensembl chr 1:215,856,971...215,858,034
JBrowse link
positive regulation of glycogen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adra1b adrenoceptor alpha 1B acts_upstream_of_or_within ISO MGI:2148638 (MGI:3027459|PMID:14581480) RGD PMID:14581480 MGI:3027459 NCBI chr10:29,392,762...29,450,644
Ensembl chr10:29,392,762...29,450,644
JBrowse link
G Avpr1a arginine vasopressin receptor 1A involved_in NAS PMID:1560825 UniProt PMID:1560825 RGD:1298691 NCBI chr 7:67,341,366...67,345,290
Ensembl chr 7:67,341,080...67,345,308
JBrowse link
G Hmgb1 high mobility group box 1 acts_upstream_of_or_within ISO MGI:3530901 (MGI:1339514|PMID:10391216) RGD PMID:10391216 MGI:1339514 NCBI chr12:7,082,529...7,090,246
Ensembl chr16:37,500,017...37,502,237
JBrowse link
regulation of glycogen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp1ca protein phosphatase 1 catalytic subunit alpha IDA RGD PMID:7720853 RGD:2304267 NCBI chr 1:219,439,953...219,443,570
Ensembl chr 1:219,439,953...219,443,570
JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta IDA RGD PMID:7720853 RGD:2304267 NCBI chr 6:23,548,507...23,581,136
Ensembl chr 6:23,549,317...23,581,052
JBrowse link
G Ppp1r3b protein phosphatase 1, regulatory subunit 3B acts_upstream_of_or_within IDA
ISO
(PMID:22225877) RGD PMID:22225877, PMID:7720853, PMID:11716774 RGD:2304267, RGD:2306167 NCBI chr16:60,415,192...60,427,498
Ensembl chr16:60,415,229...60,427,474
JBrowse link
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C IDA RGD PMID:11716774 RGD:2306167 NCBI chr 1:255,371,830...255,376,833
Ensembl chr 1:255,371,810...255,376,833
JBrowse link
G Ppp1r3d protein phosphatase 1, regulatory subunit 3D IDA RGD PMID:11716774 RGD:2306167 NCBI chr 3:173,950,613...173,953,684
Ensembl chr 3:173,950,613...173,953,684
JBrowse link
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E IDA RGD PMID:15752363 RGD:2306166 NCBI chr15:33,535,986...33,537,146
Ensembl chr15:33,535,986...33,537,146
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19491
    cellular process 18343
      cellular metabolic process 10755
        cellular carbohydrate metabolic process 312
          cellular carbohydrate catabolic process 44
            cellular polysaccharide catabolic process 21
              glycogen catabolic process 20
                glycophagy 2
                negative regulation of glycogen catabolic process 2
                positive regulation of glycogen catabolic process 3
                regulation of glycogen catabolic process + 10
Path 2
Term Annotations click to browse term
  biological_process 19491
    metabolic process 11797
      organic substance metabolic process 11337
        carbohydrate metabolic process 628
          cellular carbohydrate metabolic process 312
            cellular polysaccharide metabolic process 101
              cellular glucan metabolic process 79
                glycogen metabolic process 79
                  glycogen catabolic process 20
                    glycophagy 2
                    negative regulation of glycogen catabolic process 2
                    positive regulation of glycogen catabolic process 3
                    regulation of glycogen catabolic process + 10
paths to the root