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ONTOLOGY REPORT - ANNOTATIONS

Term:glycogen biosynthetic process
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Accession:GO:0005978 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.
Synonyms:exact_synonym: glycogen anabolism;   glycogen biosynthesis;   glycogen formation;   glycogen synthesis
 xref: MetaCyc:GLYCOGENSYNTH-PWY

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glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadm acyl-CoA dehydrogenase medium chain involved_in ISO (MGI:4412440|PMID:18459129) BHF-UCL PMID:18459129 MGI:4412440 NCBI chrNW_004936571:2,761,254...2,797,045 JBrowse link
G Akt1 AKT serine/threonine kinase 1 involved_in ISO PMID:10400692 UniProt PMID:10400692 RGD:8553850 NCBI chrNW_004936621:620,163...639,115
Ensembl chrNW_004936621:620,074...639,093 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:6161945|PMID:28536304) MGI
Ensembl		 PMID:28536304 GO_REF:0000107 MGI:6161945 NCBI chrNW_004936625:761,013...819,826
Ensembl chrNW_004936625:738,124...821,566 		JBrowse link
G Epm2aip1 EPM2A interacting protein 1 acts_upstream_of
involved_in		 ISO
IEA		 (MGI:5543825|PMID:24142699) MGI
Ensembl		 PMID:24142699 GO_REF:0000107 MGI:5543825 NCBI chrNW_004936473:26,548,847...26,556,334
Ensembl chrNW_004936473:26,548,849...26,556,333 		JBrowse link
G Gck glucokinase ISO RGD PMID:17028192 RGD:1581879 NCBI chrNW_004936478:19,104,477...19,118,915
Ensembl chrNW_004936478:19,105,361...19,158,733 		JBrowse link
G Gyg1 glycogenin 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:8224611 PMID:10710493 GO_REF:0000107 RGD:2303736 RGD:2304070 NCBI chrNW_004936519:6,582,286...6,613,440
Ensembl chrNW_004936519:6,582,286...6,613,630 		JBrowse link
G Gyg2 glycogenin 2 involved_in ISO (PMID:9857012) UniProt PMID:9857012 NCBI chrNW_004936644:3,493,875...3,515,419 JBrowse link
G Gys1 glycogen synthase 1 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (MGI:3052259|PMID:15282316) RGD
Ensembl
UniProt
InterPro
MGI		 PMID:6449198 PMID:7671134 PMID:15282316 GO_REF:0000002 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 MGI:3052259 RGD:1642743 RGD:2303748 NCBI chrNW_004936664:2,978,546...2,995,145
Ensembl chrNW_004936664:2,980,673...2,994,855 		JBrowse link
G Gys2 glycogen synthase 2 involved_in ISO
IEA		 RGD
Ensembl
InterPro
UniProt		 PMID:114169 PMID:6449198 PMID:15138155 GO_REF:0000002 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 RGD:1582633 RGD:1642743 RGD:2304128 NCBI chrNW_004936548:5,256,185...5,309,758
Ensembl chrNW_004936548:5,256,437...5,309,758 		JBrowse link
G LOC101958945 1,4-alpha-glucan-branching enzyme involved_in ISO
IEA		 RGD
Ensembl
InterPro		 PMID:6449198 GO_REF:0000002 GO_REF:0000107 RGD:1642743 NCBI chrNW_004936505:2,077,206...2,242,079
Ensembl chrNW_004936505:1,974,264...2,241,427 		JBrowse link
G Nhlrc1 NHL repeat containing E3 ubiquitin protein ligase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:6161945|PMID:28536304) MGI
Ensembl		 PMID:28536304 GO_REF:0000107 MGI:6161945 NCBI chrNW_004936552:3,891,350...3,893,566
Ensembl chrNW_004936552:3,892,372...3,893,559 		JBrowse link
G Nr1d1 nuclear receptor subfamily 1 group D member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:15,206,194...15,213,858
Ensembl chrNW_004936490:15,206,191...15,213,867 		JBrowse link
G Per2 period circadian regulator 2 involved_in ISO (MGI:4429726|PMID:20159955) UniProt PMID:20159955 MGI:4429726 NCBI chrNW_004936525:221,601...263,284
Ensembl chrNW_004936525:221,510...263,295 		JBrowse link
G Phkg1 phosphorylase kinase catalytic subunit gamma 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936543:7,870,081...7,876,033
Ensembl chrNW_004936543:7,866,141...7,876,033 		JBrowse link
G Phkg2 phosphorylase kinase catalytic subunit gamma 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936501:13,139,182...13,150,507
Ensembl chrNW_004936501:13,139,970...13,150,484 		JBrowse link
G Ppp1r3c protein phosphatase 1 regulatory subunit 3C acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1353778|PMID:10683377) MGI
Ensembl
UniProt		 PMID:10683377 GO_REF:0000104 GO_REF:0000107 MGI:1353778 NCBI chrNW_004936601:2,930,250...2,935,024
Ensembl chrNW_004936601:2,930,208...2,935,092 		JBrowse link
G Ppp1r3g protein phosphatase 1 regulatory subunit 3G acts_upstream_of
involved_in		 ISO
IEA		 (MGI:5000151|PMID:21471512) MGI
Ensembl		 PMID:21471512 GO_REF:0000107 MGI:5000151 NCBI chrNW_004936534:7,379,443...7,382,752
Ensembl chrNW_004936534:7,380,932...7,381,948 		JBrowse link
G Prkag3 protein kinase AMP-activated non-catalytic subunit gamma 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3583413|PMID:15857891) MGI
Ensembl		 PMID:15857891 GO_REF:0000107 MGI:3583413 NCBI chrNW_004936569:1,258,678...1,266,925
Ensembl chrNW_004936569:1,259,105...1,266,925 		JBrowse link
G Ptges3 prostaglandin E synthase 3 acts_upstream_of_or_within ISO (MGI:3714109|PMID:17438133) MGI PMID:17438133 MGI:3714109 NCBI chrNW_004936646:969,674...990,532 JBrowse link
G Ugp2 UDP-glucose pyrophosphorylase 2 involved_in IEA UniProt
Ensembl		 GO_REF:0000041 GO_REF:0000107 NCBI chrNW_004936491:8,773,910...8,834,984
Ensembl chrNW_004936491:8,773,892...8,837,661 		JBrowse link
negative regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:11289049) BHF-UCL PMID:11289049 NCBI chrNW_004937067:194,375...246,607 JBrowse link
G Gfpt1 glutamine--fructose-6-phosphate transaminase 1 ISO RGD PMID:8349040 RGD:1625425 NCBI chrNW_004936491:13,603,256...13,665,298
Ensembl chrNW_004936491:13,603,256...13,665,275 		JBrowse link
G Grb10 growth factor receptor bound protein 10 involved_in ISO PMID:11223174 BHF-UCL PMID:11223174 RGD:8553640 NCBI chrNW_004936686:1,102,706...1,279,594
Ensembl chrNW_004936686:1,201,882...1,279,600 		JBrowse link
G Inpp5k inositol polyphosphate-5-phosphatase K involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:7,641,485...7,662,033
Ensembl chrNW_004936538:7,641,127...7,661,787 		JBrowse link
G Insr insulin receptor ISO RGD PMID:26300412 RGD:11529553 NCBI chrNW_004936588:4,345,306...4,453,380
Ensembl chrNW_004936588:4,345,306...4,453,668 		JBrowse link
G Pask PAS domain containing serine/threonine kinase involved_in ISO (PMID:16275910) UniProt PMID:16275910 NCBI chrNW_004936745:664,062...704,027 JBrowse link
positive regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936621:620,163...639,115
Ensembl chrNW_004936621:620,074...639,093 		JBrowse link
G Akt2 AKT serine/threonine kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:2,652,568...2,694,039
Ensembl chrNW_004936661:2,652,566...2,694,086 		JBrowse link
G C1qtnf2 C1q and TNF related 2 acts_upstream_of_or_within ISO (MGI:3055459|PMID:15231994) MGI PMID:15231994 MGI:3055459 NCBI chrNW_004936515:3,208,042...3,227,970
Ensembl chrNW_004936515:3,208,061...3,228,225 		JBrowse link
G Cd36 CD36 molecule ISO RGD PMID:14640889 RGD:1600636 NCBI chrNW_004936810:791,823...838,303
Ensembl chrNW_004936810:758,182...838,365 		JBrowse link
G Dyrk2 dual specificity tyrosine phosphorylation regulated kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:5,542,873...5,555,469
Ensembl chrNW_004936545:5,542,803...5,554,136 		JBrowse link
G Epm2aip1 EPM2A interacting protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5543825|PMID:24142699) MGI
Ensembl		 PMID:24142699 GO_REF:0000107 MGI:5543825 NCBI chrNW_004936473:26,548,847...26,556,334
Ensembl chrNW_004936473:26,548,849...26,556,333 		JBrowse link
G Esrrb estrogen related receptor beta involved_in ISO PMID:24481529
(MGI:5905261|PMID:24481529)		 BHF-UCL PMID:24481529 MGI:5905261 RGD:12910990 NCBI chrNW_004936488:5,350,133...5,452,366
Ensembl chrNW_004936488:5,292,466...5,454,689 		JBrowse link
G Gck glucokinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:19,104,477...19,118,915
Ensembl chrNW_004936478:19,105,361...19,158,733 		JBrowse link
G Igf1 insulin like growth factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:11,709,623...11,784,028
Ensembl chrNW_004936492:11,709,222...11,778,351 		JBrowse link
G Igf2 insulin like growth factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936816:972,902...981,232
Ensembl chrNW_004936816:972,282...979,167 		JBrowse link
G Ins insulin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936816:1,002,137...1,003,357
Ensembl chrNW_004936816:1,002,137...1,003,357 		JBrowse link
G Insr insulin receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:4,345,306...4,453,380
Ensembl chrNW_004936588:4,345,306...4,453,668 		JBrowse link
G Irs1 insulin receptor substrate 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936525:9,064,442...9,125,972
Ensembl chrNW_004936525:9,064,466...9,122,635 		JBrowse link
G Irs2 insulin receptor substrate 2 involved_in ISO (PMID:16814735) BHF-UCL PMID:16814735 NCBI chrNW_004936472:2,772,187...2,796,398 JBrowse link
G Ppp1r3e protein phosphatase 1 regulatory subunit 3E involved_in ISO PMID:15752363 UniProt PMID:15752363 RGD:2306166 NCBI chrNW_004936722:1,062,669...1,066,611
Ensembl chrNW_004936722:1,063,576...1,066,617 		JBrowse link
G Ppp1r3g protein phosphatase 1 regulatory subunit 3G acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5000151|PMID:21471512) MGI
Ensembl		 PMID:21471512 GO_REF:0000107 MGI:5000151 NCBI chrNW_004936534:7,379,443...7,382,752
Ensembl chrNW_004936534:7,380,932...7,381,948 		JBrowse link
G Pth parathyroid hormone involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936528:5,081,569...5,084,030
Ensembl chrNW_004936528:5,083,596...5,084,030 		JBrowse link
G Sorbs1 sorbin and SH3 domain containing 1 involved_in ISO (MGI:3690172|PMID:11001060) BHF-UCL PMID:11001060 MGI:3690172 NCBI chrNW_004936636:3,834,887...4,066,293
Ensembl chrNW_004936636:3,948,733...4,066,293 		JBrowse link
regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936621:620,163...639,115
Ensembl chrNW_004936621:620,074...639,093 		JBrowse link
G Inpp5k inositol polyphosphate-5-phosphatase K involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:7,641,485...7,662,033
Ensembl chrNW_004936538:7,641,127...7,661,787 		JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO RGD PMID:17142137 RGD:1625611 NCBI chrNW_004936474:158,376...282,310
Ensembl chrNW_004936474:157,590...282,342 		JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha ISO RGD PMID:7720853 RGD:2304267 NCBI chrNW_004936599:2,345,982...2,348,494
Ensembl chrNW_004936599:2,344,552...2,348,494 		JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta ISO RGD PMID:7720853 RGD:2304267 NCBI chrNW_004936493:3,981,364...4,002,083
Ensembl chrNW_004936493:3,981,370...4,002,667 		JBrowse link
G Ppp1r3b protein phosphatase 1 regulatory subunit 3B ISO RGD PMID:7720853 PMID:11716774 RGD:2304267 RGD:2306167 NCBI chrNW_004936573:1,351,207...1,363,639
Ensembl chrNW_004936573:1,351,219...1,363,598 		JBrowse link
G Ppp1r3c protein phosphatase 1 regulatory subunit 3C ISO RGD PMID:11716774 RGD:2306167 NCBI chrNW_004936601:2,930,250...2,935,024
Ensembl chrNW_004936601:2,930,208...2,935,092 		JBrowse link
G Ppp1r3d protein phosphatase 1 regulatory subunit 3D ISO RGD PMID:11716774 RGD:2306167 NCBI chrNW_004936514:8,350,275...8,353,782
Ensembl chrNW_004936514:8,352,513...8,353,409 		JBrowse link
G Ppp1r3e protein phosphatase 1 regulatory subunit 3E ISO RGD PMID:15752363 RGD:2306166 NCBI chrNW_004936722:1,062,669...1,066,611
Ensembl chrNW_004936722:1,063,576...1,066,617 		JBrowse link
G Ppp1r3f protein phosphatase 1 regulatory subunit 3F acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21668450) MGI
Ensembl		 PMID:21668450 GO_REF:0000107 NCBI chrNW_004936721:1,137,998...1,153,243
Ensembl chrNW_004936721:1,137,916...1,156,151 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15015
    metabolic process 9426
      cellular metabolic process 7401
        generation of precursor metabolites and energy 365
          energy derivation by oxidation of organic compounds 297
            energy reserve metabolic process 84
              glycogen metabolic process 76
                glycogen biosynthetic process 45
                  negative regulation of glycogen biosynthetic process 6
                  positive regulation of glycogen biosynthetic process 18
                  regulation of glycogen biosynthetic process + 30
paths to the root