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ONTOLOGY REPORT - ANNOTATIONS

Term:glycogen biosynthetic process
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Accession:GO:0005978 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.
Synonyms:exact_synonym: glycogen anabolism;   glycogen biosynthesis;   glycogen formation;   glycogen synthesis
 xref: MetaCyc:GLYCOGENSYNTH-PWY


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glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACADM acyl-CoA dehydrogenase medium chain involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 6:137,541,481...137,575,544
Ensembl chr 6:137,541,381...137,595,108 		JBrowse link
G AGL amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase involved_in IEA UniProt
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr 4:118,186,031...118,269,106
Ensembl chr 4:118,177,377...118,269,101 		JBrowse link
G AKT1 AKT serine/threonine kinase 1 involved_in IEA UniProt GO_REF:0000043
G EPM2AIP1 EPM2A interacting protein 1 acts_upstream_of
involved_in		 ISO
IEA		 (MGI:5543825|PMID:24142699) MGI
Ensembl		 PMID:24142699 GO_REF:0000107 MGI:5543825 NCBI chr13:21,877,863...21,886,210
Ensembl chr13:21,878,146...21,879,972 		JBrowse link
G FBXO30 F-box protein 30 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:6161945|PMID:28536304) Ensembl
MGI		 PMID:28536304 GO_REF:0000107 MGI:6161945 NCBI chr 1:19,806,363...19,893,350
Ensembl chr 1:19,806,765...19,893,339 		JBrowse link
G GBE1 1,4-alpha-glucan branching enzyme 1 involved_in IEA
IBA
ISO		 (PMID:21873635) InterPro
GO_Central
Ensembl
InterPro
RGD
Ensembl
GO_Central		 PMID:6449198 PMID:21873635 GO_REF:0000002 GO_REF:0000107 RGD:1642743 NCBI chr13:173,634,401...173,909,646
Ensembl chr13:173,634,454...173,914,756 		JBrowse link
G GCK glucokinase ISO RGD PMID:17028192 RGD:1581879 NCBI chr18:50,979,167...51,024,500
Ensembl chr18:50,979,167...51,029,844 		JBrowse link
G GYG1 glycogenin 1 involved_in IBA
IEA
ISO		 (PMID:21873635) GO_Central
Ensembl
RGD
Ensembl		 PMID:8224611 PMID:10710493 PMID:21873635 GO_REF:0000107 RGD:2303736 RGD:2304070 NCBI chr13:89,221,086...89,259,569
Ensembl chr13:89,221,157...89,259,792 		JBrowse link
G GYG2 glycogenin 2 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr  X:52,310...89,412
Ensembl chr  X:52,171...89,409 		JBrowse link
G GYS1 glycogen synthase 1 involved_in
acts_upstream_of_or_within		 IEA
IBA
ISO		 (PMID:21873635)
(MGI:3052259|PMID:15282316)		 UniProt
GO_Central
UniProt
Ensembl
InterPro
MGI
RGD
GO_Central		 PMID:6449198 PMID:7671134 PMID:15282316 PMID:21873635 GO_REF:0000002 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 MGI:3052259 RGD:1642743 RGD:2303748 NCBI chr 6:54,234,600...54,250,211
Ensembl chr 6:54,233,050...54,250,261 		JBrowse link
G GYS2 glycogen synthase 2 involved_in IBA
IEA
ISO		 (PMID:21873635) GO_Central
GO_Central
UniProt
InterPro
RGD
UniProt		 PMID:114169 PMID:6449198 PMID:15138155 PMID:21873635 GO_REF:0000002 GO_REF:0000041 GO_REF:0000043 RGD:1582633 RGD:1642743 RGD:2304128 NCBI chr 5:51,862,952...51,915,153
Ensembl chr 5:51,862,863...51,917,757 		JBrowse link
G NHLRC1 NHL repeat containing E3 ubiquitin protein ligase 1 acts_upstream_of_or_within
involved_in		 ISO (MGI:6161945|PMID:28536304)
(MGI:6297136|PMID:31042462)
(MGI:4839423|PMID:20538597)		 MGI PMID:20538597 PMID:28536304 PMID:31042462 MGI:4839423 MGI:6161945 MGI:6297136 NCBI chr 7:13,816,243...13,817,644
Ensembl chr 7:13,816,246...13,817,644 		JBrowse link
G NR1D1 nuclear receptor subfamily 1 group D member 1 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr12:22,263,549...22,274,131
Ensembl chr12:22,263,657...22,271,643 		JBrowse link
G PER2 period circadian regulator 2 involved_in ISO (MGI:4429726|PMID:20159955) UniProt PMID:20159955 MGI:4429726 NCBI chr15:137,793,419...137,837,854
Ensembl chr15:137,793,422...137,837,070 		JBrowse link
G PHKG1 phosphorylase kinase catalytic subunit gamma 1 involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr 3:16,822,042...16,831,054
Ensembl chr 3:16,822,043...16,834,329 		JBrowse link
G PHKG2 phosphorylase kinase catalytic subunit gamma 2 involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr 3:17,640,790...17,656,765
Ensembl chr 3:17,639,996...17,656,618 		JBrowse link
G PPP1R3C protein phosphatase 1 regulatory subunit 3C involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1353778|PMID:10683377) UniProt
Ensembl
UniProt
MGI		 PMID:10683377 GO_REF:0000104 GO_REF:0000107 MGI:1353778 NCBI chr14:103,273,401...103,278,757
Ensembl chr14:103,273,405...103,278,762 		JBrowse link
G PPP1R3G protein phosphatase 1 regulatory subunit 3G acts_upstream_of
involved_in		 ISO
IEA		 (MGI:5000151|PMID:21471512) MGI
Ensembl		 PMID:21471512 GO_REF:0000107 MGI:5000151 NCBI chr 7:3,049,153...3,059,840
Ensembl chr 7:3,051,149...3,052,210 		JBrowse link
G PRKAG3 protein kinase AMP-activated non-catalytic subunit gamma 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3583413|PMID:15857891) Ensembl
Ensembl
MGI		 PMID:15857891 GO_REF:0000107 MGI:3583413 NCBI chr15:120,859,486...120,866,308
Ensembl chr15:120,855,201...120,866,332 		JBrowse link
G PTGES3 prostaglandin E synthase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3714109|PMID:17438133) Ensembl
Ensembl
MGI		 PMID:17438133 GO_REF:0000107 MGI:3714109 NCBI chr 5:22,000,335...22,022,830
Ensembl chr 5:22,000,341...22,021,660 		JBrowse link
G UGP2 UDP-glucose pyrophosphorylase 2 involved_in IEA UniProt
Ensembl
UniProt		 GO_REF:0000041 GO_REF:0000107 NCBI chr 3:77,975,450...78,032,471
Ensembl chr 3:77,975,441...78,031,703 		JBrowse link
negative regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:31,724,290...31,796,594
Ensembl chr 1:31,722,721...31,796,595 		JBrowse link
G GFPT1 glutamine--fructose-6-phosphate transaminase 1 ISO RGD PMID:8349040 RGD:1625425 NCBI chr 3:73,028,750...73,086,191
Ensembl chr 3:73,028,804...73,085,319 		JBrowse link
G GRB10 growth factor receptor bound protein 10 involved_in ISO PMID:11223174 BHF-UCL PMID:11223174 RGD:8553640 NCBI chr 9:136,580,363...136,742,552
Ensembl chr 9:136,580,362...136,741,756 		JBrowse link
G INPP5K inositol polyphosphate-5-phosphatase K involved_in IBA
ISS
IEA		 (PMID:21873635) GO_Central
UniProt
Ensembl
GO_Central		 PMID:21873635 GO_REF:0000024 GO_REF:0000107 NCBI chr12:47,717,898...47,738,540
Ensembl chr12:47,718,491...47,738,475 		JBrowse link
G INSR insulin receptor ISO RGD PMID:26300412 RGD:11529553 NCBI chr 2:71,797,209...71,939,923
Ensembl chr 2:71,797,204...71,936,104 		JBrowse link
G MIR15B microRNA mir-15b acts_upstream_of ISO (PMID:26179126) ARUK-UCL PMID:26179126 NCBI chr13:100,083,172...100,083,269
Ensembl chr13:100,083,172...100,083,269 		JBrowse link
G MIR195 microRNA mir-195 acts_upstream_of ISO (PMID:25240198) ARUK-UCL PMID:25240198 NCBI chr12:52,422,039...52,422,118
Ensembl chr12:52,422,039...52,422,118 		JBrowse link
G PASK PAS domain containing serine/threonine kinase involved_in IBA
IEA		 (PMID:21873635) GO_Central
GO_Central
Ensembl		 PMID:21873635 GO_REF:0000107 NCBI chr15:139,887,439...139,917,887
Ensembl chr15:139,890,178...139,917,069 		JBrowse link
G PASK PAS domain containing serine/threonine kinase involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr15:139,881,217...139,887,505
Ensembl chr15:139,881,222...139,887,032 		JBrowse link
positive regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKT1 AKT serine/threonine kinase 1 involved_in ISO (PMID:16814735) BHF-UCL PMID:16814735
G AKT2 AKT serine/threonine kinase 2 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 6:48,555,785...48,620,472
Ensembl chr 6:48,555,795...48,587,919 		JBrowse link
G C1QTNF2 C1q and TNF related 2 acts_upstream_of_or_within ISO (MGI:3055459|PMID:15231994) MGI PMID:15231994 MGI:3055459 NCBI chr16:63,167,087...63,185,938
Ensembl chr16:63,167,184...63,189,815 		JBrowse link
G CD36 CD36 molecule ISO RGD PMID:14640889 RGD:1600636 NCBI chr 9:99,685,748...99,782,296
Ensembl chr 9:99,605,181...99,782,105 		JBrowse link
G DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 5:32,047,614...32,064,231
Ensembl chr 5:32,047,643...32,064,222 		JBrowse link
G EPM2AIP1 EPM2A interacting protein 1 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 (PMID:21873635)
(MGI:5543825|PMID:24142699)		 GO_Central
GO_Central
Ensembl
MGI		 PMID:21873635 PMID:24142699 GO_REF:0000107 MGI:5543825 NCBI chr13:21,877,863...21,886,210
Ensembl chr13:21,878,146...21,879,972 		JBrowse link
G ESRRB estrogen related receptor beta involved_in ISO PMID:24481529
(MGI:5905261|PMID:24481529)		 BHF-UCL PMID:24481529 MGI:5905261 RGD:12910990 NCBI chr 7:99,511,135...99,699,478
Ensembl chr 7:99,514,168...99,699,011 		JBrowse link
G GCK glucokinase involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr18:50,979,167...51,024,500
Ensembl chr18:50,979,167...51,029,844 		JBrowse link
G IGF1 insulin like growth factor 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 5:81,762,027...81,909,253
Ensembl chr 5:81,775,970...81,848,033 		JBrowse link
G IGF2 insulin like growth factor 2 involved_in ISO (MGI:4438697|PMID:20032056) BHF-UCL PMID:20032056 MGI:4438697 NCBI chr 2:1,469,183...1,496,417 JBrowse link
G INS insulin involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 2:1,496,842...1,498,052
Ensembl chr 2:1,496,842...1,497,841 		JBrowse link
G INSR insulin receptor involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 2:71,797,209...71,939,923
Ensembl chr 2:71,797,204...71,936,104 		JBrowse link
G IRS1 insulin receptor substrate 1 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr15:128,245,846...128,307,321
Ensembl chr15:128,245,846...128,307,284 		JBrowse link
G IRS2 insulin receptor substrate 2 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr11:76,626,158...76,654,639
Ensembl chr11:76,626,179...76,653,881 		JBrowse link
G MYL7 myosin light chain 7 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr18:51,026,436...51,028,917
Ensembl chr18:50,979,167...51,029,844 		JBrowse link
G PPP1R3E protein phosphatase 1 regulatory subunit 3E involved_in ISO PMID:15752363 UniProt PMID:15752363 RGD:2306166 NCBI chr 7:75,770,813...75,782,717
Ensembl chr 7:75,776,720...75,780,649 		JBrowse link
G PPP1R3G protein phosphatase 1 regulatory subunit 3G involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:5000151|PMID:21471512) Ensembl
Ensembl
MGI		 PMID:21471512 GO_REF:0000107 MGI:5000151 NCBI chr 7:3,049,153...3,059,840
Ensembl chr 7:3,051,149...3,052,210 		JBrowse link
G PTH parathyroid hormone involved_in ISS
IEA		 UniProt
UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:45,757,398...45,760,433
Ensembl chr 2:45,757,398...45,760,415 		JBrowse link
G SORBS1 sorbin and SH3 domain containing 1 involved_in ISO (MGI:3690172|PMID:11001060) BHF-UCL PMID:11001060 MGI:3690172 NCBI chr14:106,895,764...107,137,469
Ensembl chr14:106,895,765...107,137,561 		JBrowse link
regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKT1 AKT serine/threonine kinase 1 involved_in ISO (PMID:8940145) BHF-UCL PMID:8940145
G INPP5K inositol polyphosphate-5-phosphatase K involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr12:47,717,898...47,738,540
Ensembl chr12:47,718,491...47,738,475 		JBrowse link
G MTOR mechanistic target of rapamycin kinase ISO RGD PMID:17142137 RGD:1625611 NCBI chr 6:71,286,989...71,412,913
Ensembl chr 6:71,286,989...71,412,888 		JBrowse link
G PPP1CA protein phosphatase 1 catalytic subunit alpha ISO RGD PMID:7720853 RGD:2304267 NCBI chr 2:5,120,202...5,123,168
Ensembl chr 2:5,119,939...5,123,617 		JBrowse link
G PPP1CB protein phosphatase 1 catalytic subunit beta ISO RGD PMID:7720853 RGD:2304267 NCBI chr 3:110,437,681...110,474,896
Ensembl chr 3:110,437,688...110,474,891 		JBrowse link
G PPP1R3A protein phosphatase 1 regulatory subunit 3A involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr18:31,997,667...32,039,949
Ensembl chr18:31,997,713...32,039,852 		JBrowse link
G PPP1R3B protein phosphatase 1 regulatory subunit 3B involved_in IBA
ISO		 (PMID:21873635) GO_Central
GO_Central
RGD		 PMID:7720853 PMID:11716774 PMID:21873635 RGD:2304267 RGD:2306167 NCBI chr15:56,002,383...56,013,477
Ensembl chr15:56,002,378...56,013,478 		JBrowse link
G PPP1R3C protein phosphatase 1 regulatory subunit 3C involved_in IBA
ISO		 (PMID:21873635) GO_Central
GO_Central
RGD		 PMID:11716774 PMID:21873635 RGD:2306167 NCBI chr14:103,273,401...103,278,757
Ensembl chr14:103,273,405...103,278,762 		JBrowse link
G PPP1R3D protein phosphatase 1 regulatory subunit 3D involved_in IBA
ISO		 (PMID:21873635) GO_Central
GO_Central
RGD		 PMID:11716774 PMID:21873635 RGD:2306167 NCBI chr17:59,963,560...59,967,143
Ensembl chr17:59,964,585...59,967,113 		JBrowse link
G PPP1R3E protein phosphatase 1 regulatory subunit 3E involved_in IBA
ISO		 (PMID:21873635) GO_Central
GO_Central
RGD		 PMID:15752363 PMID:21873635 RGD:2306166 NCBI chr 7:75,770,813...75,782,717
Ensembl chr 7:75,776,720...75,780,649 		JBrowse link
G PPP1R3F protein phosphatase 1 regulatory subunit 3F involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 (PMID:21873635)
(PMID:21668450)		 GO_Central
GO_Central
Ensembl
Ensembl
MGI		 PMID:21668450 PMID:21873635 GO_REF:0000107 NCBI chr  X:43,328,199...43,344,503
Ensembl chr  X:43,328,274...43,344,013 		JBrowse link
G PPP1R3G protein phosphatase 1 regulatory subunit 3G involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 7:3,049,153...3,059,840
Ensembl chr 7:3,051,149...3,052,210 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17636
    metabolic process 11038
      cellular metabolic process 8650
        generation of precursor metabolites and energy 391
          energy derivation by oxidation of organic compounds 323
            energy reserve metabolic process 92
              glycogen metabolic process 83
                glycogen biosynthetic process 51
                  negative regulation of glycogen biosynthetic process 9
                  positive regulation of glycogen biosynthetic process 19
                  regulation of glycogen biosynthetic process + 35
paths to the root