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ONTOLOGY REPORT - ANNOTATIONS


Term:glycogen biosynthetic process
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Accession:GO:0005978 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.
Synonyms:exact_synonym: glycogen anabolism;   glycogen biosynthesis;   glycogen formation;   glycogen synthesis
 xref: MetaCyc:GLYCOGENSYNTH-PWY;   MetaCyc:PWY-5067;   MetaCyc:PWY-7900



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glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACADM acyl-CoA dehydrogenase medium chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:137,541,481...137,575,544
Ensembl chr 6:137,541,381...137,595,108
JBrowse link
G AGL amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chr 4:118,186,031...118,269,106
Ensembl chr 4:118,177,377...118,269,101
JBrowse link
G AKT1 AKT serine/threonine kinase 1 involved_in IEA UniProt GO_REF:0000043
G EPM2AIP1 EPM2A interacting protein 1 acts_upstream_of
involved_in
ISO
IEA
(MGI:5543825|PMID:24142699) MGI
Ensembl
PMID:24142699 GO_REF:0000107 MGI:5543825 NCBI chr13:21,877,863...21,886,210
Ensembl chr13:21,878,146...21,879,972
JBrowse link
G FBXO30 F-box protein 30 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:6161945|PMID:28536304) Ensembl
MGI
PMID:28536304 GO_REF:0000107 MGI:6161945 NCBI chr 1:19,806,363...19,893,350
Ensembl chr 1:19,806,765...19,893,339
JBrowse link
G GBE1 1,4-alpha-glucan branching enzyme 1 involved_in ISO
IEA
IBA
RGD
Ensembl
GO_Central
TreeGrafter
InterPro
PMID:6449198 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:1642743 NCBI chr13:173,634,401...173,909,646
Ensembl chr13:173,634,454...173,914,756
JBrowse link
G GYG1 glycogenin 1 involved_in ISO
IEA
IBA
RGD
TreeGrafter
GO_Central
UniProt
Ensembl
PMID:8224611 PMID:10710493 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 RGD:2303736 RGD:2304070 NCBI chr13:89,221,086...89,259,569
Ensembl chr13:89,221,157...89,259,792
JBrowse link
G GYG2 glycogenin 2 involved_in IEA Ensembl
UniProt
GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 NCBI chr  X:52,310...89,412
Ensembl chr  X:52,171...89,409
JBrowse link
G GYS1 glycogen synthase 1 involved_in
acts_upstream_of_or_within
ISO
IEA
IBA
(MGI:3052259|PMID:15282316) RGD
TreeGrafter
GO_Central
Ensembl
UniProt
InterPro
MGI
PMID:6449198 PMID:7671134 PMID:15282316 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 MGI:3052259 RGD:1642743 RGD:2303748 NCBI chr 6:54,234,600...54,250,211
Ensembl chr 6:54,233,050...54,250,261
JBrowse link
G GYS2 glycogen synthase 2 involved_in ISO
IEA
IBA
RGD
TreeGrafter
GO_Central
Ensembl
UniProt
InterPro
PMID:114169 PMID:6449198 PMID:15138155 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 RGD:1582633 RGD:1642743 RGD:2304128 NCBI chr 5:51,862,952...51,915,153
Ensembl chr 5:51,862,863...51,917,757
JBrowse link
G NHLRC1 NHL repeat containing E3 ubiquitin protein ligase 1 acts_upstream_of_or_within
involved_in
ISO (MGI:6161945|PMID:28536304)
(MGI:6297136|PMID:31042462)
(MGI:4839423|PMID:20538597)
MGI PMID:20538597 PMID:28536304 PMID:31042462 MGI:4839423 MGI:6161945 MGI:6297136 NCBI chr 7:13,816,243...13,817,644
Ensembl chr 7:13,816,246...13,817,644
JBrowse link
G NR1D1 nuclear receptor subfamily 1 group D member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:22,263,549...22,274,131
Ensembl chr12:22,263,657...22,271,643
JBrowse link
G PER2 period circadian regulator 2 involved_in ISO (MGI:4429726|PMID:20159955) UniProt PMID:20159955 MGI:4429726 NCBI chr15:137,793,419...137,837,854
Ensembl chr15:137,793,422...137,837,070
JBrowse link
G PGM2 phosphoglucomutase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:29,307,628...29,343,012
Ensembl chr 8:29,307,685...29,342,861
JBrowse link
G PHKG1 phosphorylase kinase catalytic subunit gamma 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:16,822,042...16,831,054
Ensembl chr 3:16,822,043...16,834,329
JBrowse link
G PHKG2 phosphorylase kinase catalytic subunit gamma 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:17,640,790...17,656,765
Ensembl chr 3:17,639,996...17,656,618
JBrowse link
G PPP1R3C protein phosphatase 1 regulatory subunit 3C acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1353778|PMID:10683377) MGI
Ensembl
UniProt
PMID:10683377 GO_REF:0000104 GO_REF:0000107 MGI:1353778 NCBI chr14:103,273,401...103,278,757
Ensembl chr14:103,273,405...103,278,762
JBrowse link
G PPP1R3G protein phosphatase 1 regulatory subunit 3G acts_upstream_of
involved_in
ISO
IEA
(MGI:5000151|PMID:21471512) MGI
Ensembl
PMID:21471512 GO_REF:0000107 MGI:5000151 NCBI chr 7:3,049,153...3,059,840
Ensembl chr 7:3,051,149...3,052,210
JBrowse link
G PRKAG3 protein kinase AMP-activated non-catalytic subunit gamma 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3583413|PMID:15857891) MGI
Ensembl
PMID:15857891 GO_REF:0000107 MGI:3583413 NCBI chr15:120,859,486...120,866,308
Ensembl chr15:120,855,201...120,866,332
JBrowse link
G PTGES3 prostaglandin E synthase 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3714109|PMID:17438133) MGI
Ensembl
PMID:17438133 GO_REF:0000107 MGI:3714109 NCBI chr 5:22,000,335...22,022,830
Ensembl chr 5:22,000,341...22,021,660
JBrowse link
G UGP2 UDP-glucose pyrophosphorylase 2 involved_in IEA UniProt
Ensembl
GO_REF:0000041 GO_REF:0000107 NCBI chr 3:77,975,450...78,032,471
Ensembl chr 3:77,975,441...78,031,703
JBrowse link
negative regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:31,724,290...31,796,594
Ensembl chr 1:31,722,721...31,796,595
JBrowse link
G GFPT1 glutamine--fructose-6-phosphate transaminase 1 ISO RGD PMID:8349040 RGD:1625425 NCBI chr 3:73,028,750...73,086,191
Ensembl chr 3:73,028,804...73,085,319
JBrowse link
G GRB10 growth factor receptor bound protein 10 involved_in ISO PMID:11223174 BHF-UCL PMID:11223174 RGD:8553640 NCBI chr 9:136,580,363...136,742,552
Ensembl chr 9:136,580,362...136,741,756
JBrowse link
G INPP5K inositol polyphosphate-5-phosphatase K involved_in IEA
IBA
ISS
Ensembl
TreeGrafter
GO_Central
UniProt
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr12:47,717,898...47,738,540
Ensembl chr12:47,718,491...47,738,475
JBrowse link
G INSR insulin receptor ISO RGD PMID:26300412 RGD:11529553 NCBI chr 2:71,797,209...71,939,923
Ensembl chr 2:71,797,204...71,936,104
JBrowse link
G MIR15B microRNA mir-15b acts_upstream_of ISO (PMID:26179126) ARUK-UCL PMID:26179126 NCBI chr13:100,083,172...100,083,269
Ensembl chr13:100,083,172...100,083,269
JBrowse link
G MIR195 microRNA mir-195 acts_upstream_of ISO (PMID:25240198) ARUK-UCL PMID:25240198 NCBI chr12:52,422,039...52,422,118
Ensembl chr12:52,422,039...52,422,118
JBrowse link
G PASK PAS domain containing serine/threonine kinase involved_in IEA
IBA
Ensembl
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr15:139,887,439...139,917,887
Ensembl chr15:139,890,178...139,917,069
JBrowse link
G PASK PAS domain containing serine/threonine kinase involved_in IEA
IBA
Ensembl
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr15:139,881,217...139,887,505
Ensembl chr15:139,881,222...139,887,032
JBrowse link
positive regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKT1 AKT serine/threonine kinase 1 involved_in ISO (PMID:16814735) BHF-UCL PMID:16814735
G AKT2 AKT serine/threonine kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:48,555,785...48,620,472
Ensembl chr 6:48,555,795...48,587,919
JBrowse link
G C1QTNF2 C1q and TNF related 2 acts_upstream_of_or_within ISO (MGI:3055459|PMID:15231994) MGI PMID:15231994 MGI:3055459 NCBI chr16:63,167,087...63,185,938
Ensembl chr16:63,167,184...63,189,815
JBrowse link
G CD36 CD36 molecule ISO RGD PMID:14640889 RGD:1600636 NCBI chr 9:99,685,748...99,782,296
Ensembl chr 9:99,605,181...99,782,105
JBrowse link
G DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:32,047,614...32,064,231
Ensembl chr 5:32,047,643...32,064,222
JBrowse link
G EPM2AIP1 EPM2A interacting protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5543825|PMID:24142699) MGI
Ensembl
TreeGrafter
PMID:24142699 GO_REF:0000107 GO_REF:0000118 MGI:5543825 NCBI chr13:21,877,863...21,886,210
Ensembl chr13:21,878,146...21,879,972
JBrowse link
G ESRRB estrogen related receptor beta involved_in ISO PMID:24481529
(MGI:5905261|PMID:24481529)
BHF-UCL PMID:24481529 MGI:5905261 RGD:12910990 NCBI chr 7:99,511,135...99,699,478
Ensembl chr 7:99,514,168...99,699,011
JBrowse link
G GCK glucokinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:50,979,167...51,024,500
Ensembl chr18:50,979,167...51,029,844
JBrowse link
G IGF1 insulin like growth factor 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 5:81,762,027...81,909,253
Ensembl chr 5:81,775,970...81,848,033
JBrowse link
G IGF2 insulin like growth factor 2 acts_upstream_of ISO (MGI:4438697|PMID:20032056) BHF-UCL PMID:20032056 MGI:4438697 NCBI chr 2:1,469,183...1,496,417 JBrowse link
G INS insulin involved_in ISO (PMID:17925406) BHF-UCL PMID:17925406 NCBI chr 2:1,496,842...1,498,052
Ensembl chr 2:1,496,842...1,497,841
JBrowse link
G INSR insulin receptor involved_in
acts_upstream_of
IEA
ISO
(MGI:4438697|PMID:20032056) Ensembl
BHF-UCL
PMID:20032056 GO_REF:0000107 MGI:4438697 NCBI chr 2:71,797,209...71,939,923
Ensembl chr 2:71,797,204...71,936,104
JBrowse link
G IRS1 insulin receptor substrate 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:128,245,846...128,307,321
Ensembl chr15:128,245,846...128,307,284
JBrowse link
G IRS2 insulin receptor substrate 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:76,626,158...76,654,639
Ensembl chr11:76,626,179...76,653,881
JBrowse link
G MYL7 myosin light chain 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:51,026,436...51,028,917
Ensembl chr18:50,979,167...51,029,844
JBrowse link
G PPP1R3E protein phosphatase 1 regulatory subunit 3E involved_in ISO PMID:15752363 UniProt PMID:15752363 RGD:2306166 NCBI chr 7:75,770,813...75,782,717
Ensembl chr 7:75,776,720...75,780,649
JBrowse link
G PPP1R3G protein phosphatase 1 regulatory subunit 3G acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5000151|PMID:21471512) MGI
Ensembl
PMID:21471512 GO_REF:0000107 MGI:5000151 NCBI chr 7:3,049,153...3,059,840
Ensembl chr 7:3,051,149...3,052,210
JBrowse link
G PTH parathyroid hormone involved_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 2:45,757,398...45,760,433
Ensembl chr 2:45,757,398...45,760,415
JBrowse link
G SORBS1 sorbin and SH3 domain containing 1 involved_in ISO (MGI:3690172|PMID:11001060) BHF-UCL PMID:11001060 MGI:3690172 NCBI chr14:106,895,764...107,137,469
Ensembl chr14:106,895,765...107,137,561
JBrowse link
regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKT1 AKT serine/threonine kinase 1 involved_in ISO (PMID:8940145) BHF-UCL PMID:8940145
G INPP5K inositol polyphosphate-5-phosphatase K involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr12:47,717,898...47,738,540
Ensembl chr12:47,718,491...47,738,475
JBrowse link
G MTOR mechanistic target of rapamycin kinase ISO RGD PMID:17142137 RGD:1625611 NCBI chr 6:71,286,989...71,412,913
Ensembl chr 6:71,286,989...71,412,888
JBrowse link
G PPP1CA protein phosphatase 1 catalytic subunit alpha ISO RGD PMID:7720853 RGD:2304267 NCBI chr 2:5,120,202...5,123,168
Ensembl chr 2:5,119,939...5,123,617
JBrowse link
G PPP1CB protein phosphatase 1 catalytic subunit beta ISO RGD PMID:7720853 RGD:2304267 NCBI chr 3:110,437,681...110,474,896
Ensembl chr 3:110,437,688...110,474,891
JBrowse link
G PPP1R3A protein phosphatase 1 regulatory subunit 3A involved_in IEA
IBA
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr18:31,997,667...32,039,949
Ensembl chr18:31,997,713...32,039,852
JBrowse link
G PPP1R3B protein phosphatase 1 regulatory subunit 3B involved_in ISO
IEA
IBA
RGD
TreeGrafter
GO_Central
PMID:7720853 PMID:11716774 GO_REF:0000033 GO_REF:0000118 RGD:2304267 RGD:2306167 NCBI chr15:56,002,383...56,013,477
Ensembl chr15:56,002,378...56,013,478
JBrowse link
G PPP1R3C protein phosphatase 1 regulatory subunit 3C involved_in ISO
IEA
RGD
TreeGrafter
PMID:11716774 GO_REF:0000118 RGD:2306167 NCBI chr14:103,273,401...103,278,757
Ensembl chr14:103,273,405...103,278,762
JBrowse link
G PPP1R3D protein phosphatase 1 regulatory subunit 3D involved_in ISO
IEA
IBA
RGD
TreeGrafter
GO_Central
PMID:11716774 GO_REF:0000033 GO_REF:0000118 RGD:2306167 NCBI chr17:59,963,560...59,967,143
Ensembl chr17:59,964,585...59,967,113
JBrowse link
G PPP1R3E protein phosphatase 1 regulatory subunit 3E involved_in ISO
IBA
IEA
RGD
GO_Central
TreeGrafter
PMID:15752363 GO_REF:0000033 GO_REF:0000118 RGD:2306166 NCBI chr 7:75,770,813...75,782,717
Ensembl chr 7:75,776,720...75,780,649
JBrowse link
G PPP1R3F protein phosphatase 1 regulatory subunit 3F acts_upstream_of_or_within
involved_in
ISO
IBA
IEA
(PMID:21668450) MGI
GO_Central
TreeGrafter
Ensembl
PMID:21668450 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:43,328,199...43,344,503
Ensembl chr  X:43,328,274...43,344,013
JBrowse link
G PPP1R3G protein phosphatase 1 regulatory subunit 3G involved_in IBA
IEA
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 7:3,049,153...3,059,840
Ensembl chr 7:3,051,149...3,052,210
JBrowse link

Term paths to the root
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Term Annotations click to browse term
  biological_process 17778
    metabolic process 10327
      cellular metabolic process 9034
        generation of precursor metabolites and energy 446
          energy derivation by oxidation of organic compounds 326
            energy reserve metabolic process 94
              glycogen metabolic process 84
                glycogen biosynthetic process 52
                  negative regulation of glycogen biosynthetic process 9
                  positive regulation of glycogen biosynthetic process 19
                  regulation of glycogen biosynthetic process + 35
paths to the root