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ONTOLOGY REPORT - ANNOTATIONS

Term:glycogen biosynthetic process
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Accession:GO:0005978 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.
Synonyms:exact_synonym: glycogen anabolism;   glycogen biosynthesis;   glycogen formation;   glycogen synthesis
 xref: MetaCyc:GLYCOGENSYNTH-PWY


show annotations for term's descendants           Sort by:
glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACADM acyl-CoA dehydrogenase medium chain involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 1:75,724,709...75,763,679
Ensembl chr 1:75,724,431...75,787,575 		JBrowse link
G AGL amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase involved_in IEA UniProt
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 1:99,849,258...99,924,023
Ensembl chr 1:99,850,361...99,924,023 		JBrowse link
G AKT1 AKT serine/threonine kinase 1 involved_in IEA UniProt
UniProt		 GO_REF:0000043 NCBI chr14:104,769,349...104,795,748
Ensembl chr14:104,769,349...104,795,751 		JBrowse link
G AKT2 AKT serine/threonine kinase 2 involved_in IEA UniProt
UniProt		 GO_REF:0000043 NCBI chr19:40,230,317...40,285,345
Ensembl chr19:40,230,317...40,285,536 		JBrowse link
G EPM2A EPM2A glucan phosphatase, laforin involved_in
acts_upstream_of_or_within		 TAS
IEA
ISO		 (MGI:6161945|PMID:28536304) Reactome
Reactome
Ensembl
MGI		 PMID:28536304 GO_REF:0000107 MGI:6161945 Reactome:R-HSA-3322077 NCBI chr 6:145,383,353...145,736,023
Ensembl chr 6:145,382,535...145,736,023 		JBrowse link
G EPM2AIP1 EPM2A interacting protein 1 acts_upstream_of
involved_in		 ISO
IEA		 (MGI:5543825|PMID:24142699) MGI
Ensembl		 PMID:24142699 GO_REF:0000107 MGI:5543825 NCBI chr 3:36,985,043...36,993,131
Ensembl chr 3:36,985,043...36,993,131 		JBrowse link
G GBE1 1,4-alpha-glucan branching enzyme 1 involved_in IDA
IBA
IEA
TAS
ISO		 (PMID:26199317)
(PMID:21873635)		 UniProt
GO_Central
Ensembl
InterPro
UniProt
Reactome
RGD
GO_Central
InterPro
Reactome		 PMID:6449198 PMID:21873635 PMID:26199317 GO_REF:0000002 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 RGD:1642743 Reactome:R-HSA-3322077 NCBI chr 3:81,489,703...81,761,645
Ensembl chr 3:81,489,703...81,761,645 		JBrowse link
G GCK glucokinase ISO RGD PMID:17028192 RGD:1581879 NCBI chr 7:44,143,213...44,189,439
Ensembl chr 7:44,143,213...44,198,170 		JBrowse link
G GYG1 glycogenin 1 involved_in TAS
IEA
IMP
ISO
IBA		 (PMID:22160680)
(PMID:21873635)		 Reactome
UniProt
Reactome
RGD
GO_Central
UniProt		 PMID:8224611 PMID:10710493 PMID:21873635 PMID:22160680 GO_REF:0000041 GO_REF:0000043 RGD:2303736 RGD:2304070 Reactome:R-HSA-3322077 NCBI chr 3:148,991,540...149,031,775
Ensembl chr 3:148,991,408...149,031,775 		JBrowse link
G GYG2 glycogenin 2 involved_in TAS
IDA
IEA		 (PMID:9857012) Reactome
Reactome
UniProt
UniProt		 PMID:9857012 GO_REF:0000041 GO_REF:0000043 Reactome:R-HSA-3322077 NCBI chr  X:2,828,930...2,882,818
Ensembl chr  X:2,828,822...2,882,820 		JBrowse link
G GYS1 glycogen synthase 1 involved_in
acts_upstream_of_or_within		 IEA
IBA
IDA
TAS
ISO		 (PMID:21873635)
(PMID:16275910)
(MGI:3052259|PMID:15282316)		 UniProt
GO_Central
Ensembl
UniProt
InterPro
Reactome
MGI
RGD
GO_Central
Reactome		 PMID:6449198 PMID:7671134 PMID:15282316 PMID:16275910 PMID:21873635 GO_REF:0000002 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 MGI:3052259 RGD:1642743 RGD:2303748 Reactome:R-HSA-3322077 NCBI chr19:48,968,130...48,993,309
Ensembl chr19:48,968,130...48,993,310 		JBrowse link
G GYS2 glycogen synthase 2 involved_in IBA
IEA
ISS
TAS
IDA
ISO		 (PMID:21873635)
(PMID:1731614)		 GO_Central
GO_Central
Ensembl
UniProt
Reactome
InterPro
RGD
UniProt
Reactome		 PMID:114169 PMID:1731614 PMID:6449198 PMID:15138155 PMID:21873635 GO_REF:0000002 GO_REF:0000024 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 RGD:1582633 RGD:1642743 RGD:2304128 Reactome:R-HSA-3322077 NCBI chr12:21,532,577...21,604,847
Ensembl chr12:21,536,107...21,604,847 		JBrowse link
G NHLRC1 NHL repeat containing E3 ubiquitin protein ligase 1 involved_in
acts_upstream_of_or_within		 TAS
IEA
ISO		 (MGI:6161945|PMID:28536304) Reactome
Ensembl
Reactome
MGI		 PMID:28536304 GO_REF:0000107 MGI:6161945 Reactome:R-HSA-3322077 NCBI chr 6:18,120,440...18,122,677
Ensembl chr 6:18,120,440...18,122,677 		JBrowse link
G NR1D1 nuclear receptor subfamily 1 group D member 1 involved_in ISS
IEA		 UniProt
UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr17:40,092,793...40,100,589
Ensembl chr17:40,092,793...40,100,589 		JBrowse link
G PER2 period circadian regulator 2 involved_in ISS UniProt
UniProt		 GO_REF:0000024 NCBI chr 2:238,244,044...238,300,065
Ensembl chr 2:238,244,044...238,290,102 		JBrowse link
G PHKG1 phosphorylase kinase catalytic subunit gamma 1 involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr 7:56,080,295...56,092,952
Ensembl chr 7:56,080,283...56,092,996 		JBrowse link
G PHKG2 phosphorylase kinase catalytic subunit gamma 2 involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr16:30,748,425...30,761,176
Ensembl chr16:30,748,293...30,761,176 		JBrowse link
G PPP1R3C protein phosphatase 1 regulatory subunit 3C involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 (MGI:1353778|PMID:10683377) UniProt
UniProt
Ensembl
MGI		 PMID:10683377 GO_REF:0000024 GO_REF:0000107 MGI:1353778 NCBI chr10:91,628,442...91,633,071
Ensembl chr10:91,628,442...91,633,071 		JBrowse link
G PPP1R3G protein phosphatase 1 regulatory subunit 3G acts_upstream_of
involved_in		 ISO
IEA		 (MGI:5000151|PMID:21471512) MGI
Ensembl		 PMID:21471512 GO_REF:0000107 MGI:5000151 NCBI chr 6:5,085,341...5,089,487
Ensembl chr 6:5,085,341...5,089,487 		JBrowse link
G PRKAG3 protein kinase AMP-activated non-catalytic subunit gamma 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3583413|PMID:15857891) Ensembl
Ensembl
MGI		 PMID:15857891 GO_REF:0000107 MGI:3583413 NCBI chr 2:218,822,308...218,831,803
Ensembl chr 2:218,822,308...218,832,086 		JBrowse link
G PTGES3 prostaglandin E synthase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3714109|PMID:17438133) Ensembl
Ensembl
MGI		 PMID:17438133 GO_REF:0000107 MGI:3714109 NCBI chr12:56,663,349...56,688,284
Ensembl chr12:56,663,341...56,688,408 		JBrowse link
G UGP2 UDP-glucose pyrophosphorylase 2 involved_in IEA
IMP		 (PMID:31820119) UniProt
Ensembl
UniProt		 PMID:31820119 GO_REF:0000041 GO_REF:0000107 NCBI chr 2:63,840,969...63,891,560
Ensembl chr 2:63,840,952...63,891,562 		JBrowse link
negative regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in IDA (PMID:11289049) BHF-UCL
BHF-UCL		 PMID:11289049 NCBI chr 6:131,808,020...131,895,155
Ensembl chr 6:131,808,016...131,895,155 		JBrowse link
G GFPT1 glutamine--fructose-6-phosphate transaminase 1 ISO RGD PMID:8349040 RGD:1625425 NCBI chr 2:69,319,780...69,387,227
Ensembl chr 2:69,319,780...69,387,250 		JBrowse link
G GRB10 growth factor receptor bound protein 10 involved_in ISS BHF-UCL
BHF-UCL		 GO_REF:0000024 NCBI chr 7:50,590,068...50,793,453
Ensembl chr 7:50,590,063...50,793,462 		JBrowse link
G GSK3A glycogen synthase kinase 3 alpha involved_in TAS (PMID:19366350) UniProt
UniProt		 PMID:19366350 NCBI chr19:42,230,190...42,242,602
Ensembl chr19:42,226,225...42,242,625 		JBrowse link
G GSK3B glycogen synthase kinase 3 beta involved_in TAS (PMID:19366350) UniProt
UniProt		 PMID:19366350 NCBI chr 3:119,821,321...120,094,447
Ensembl chr 3:119,821,321...120,094,994 		JBrowse link
G INPP5K inositol polyphosphate-5-phosphatase K involved_in IBA
IEA
IDA		 (PMID:21873635)
(PMID:12556481)		 GO_Central
Ensembl
UniProt
GO_Central
UniProt		 PMID:12556481 PMID:21873635 GO_REF:0000107 NCBI chr17:1,494,577...1,516,612
Ensembl chr17:1,494,577...1,516,742 		JBrowse link
G INSR insulin receptor ISO RGD PMID:26300412 RGD:11529553 NCBI chr19:7,112,265...7,294,414
Ensembl chr19:7,112,255...7,294,414 		JBrowse link
G MIR1271 microRNA 1271 acts_upstream_of IDA (PMID:27613089) ARUK-UCL PMID:27613089 NCBI chr 5:176,367,946...176,368,031
Ensembl chr 5:176,367,946...176,368,031 		JBrowse link
G MIR15B microRNA 15b acts_upstream_of IMP (PMID:26179126) ARUK-UCL PMID:26179126 NCBI chr 3:160,404,588...160,404,685
Ensembl chr 3:160,404,588...160,404,685 		JBrowse link
G MIR195 microRNA 195 acts_upstream_of IMP (PMID:25240198) ARUK-UCL PMID:25240198 NCBI chr17:7,017,615...7,017,701
Ensembl chr17:7,017,615...7,017,701 		JBrowse link
G PASK PAS domain containing serine/threonine kinase involved_in IBA
IDA		 (PMID:21873635)
(PMID:16275910)		 GO_Central
UniProt
GO_Central
UniProt		 PMID:16275910 PMID:21873635 NCBI chr 2:241,106,099...241,150,347
Ensembl chr 2:241,106,099...241,150,264 		JBrowse link
G SELENOS selenoprotein S involved_in TAS (PMID:12663463) BHF-UCL
BHF-UCL		 PMID:12663463 NCBI chr15:101,270,809...101,277,485
Ensembl chr15:101,270,817...101,277,500 		JBrowse link
positive regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKT1 AKT serine/threonine kinase 1 involved_in NAS
IMP		 (PMID:17925406)
(PMID:16814735)		 BHF-UCL
BHF-UCL		 PMID:16814735 PMID:17925406 NCBI chr14:104,769,349...104,795,748
Ensembl chr14:104,769,349...104,795,751 		JBrowse link
G AKT2 AKT serine/threonine kinase 2 involved_in IMP (PMID:16814735) BHF-UCL
BHF-UCL		 PMID:16814735 NCBI chr19:40,230,317...40,285,345
Ensembl chr19:40,230,317...40,285,536 		JBrowse link
G C1QTNF2 C1q and TNF related 2 acts_upstream_of_or_within ISO (MGI:3055459|PMID:15231994) MGI PMID:15231994 MGI:3055459 NCBI chr 5:160,347,754...160,370,626
Ensembl chr 5:160,347,754...160,370,641 		JBrowse link
G CD36 CD36 molecule ISO RGD PMID:14640889 RGD:1600636 NCBI chr 7:80,602,207...80,679,274
Ensembl chr 7:80,369,575...80,679,277 		JBrowse link
G DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 involved_in IDA (PMID:11311121) UniProt
UniProt		 PMID:11311121 NCBI chr12:67,648,745...67,665,406
Ensembl chr12:67,648,338...67,665,406 		JBrowse link
G EPM2AIP1 EPM2A interacting protein 1 involved_in
acts_upstream_of_or_within		 IBA
ISO
IEA		 (PMID:21873635)
(MGI:5543825|PMID:24142699)		 GO_Central
MGI
Ensembl
GO_Central		 PMID:21873635 PMID:24142699 GO_REF:0000107 MGI:5543825 NCBI chr 3:36,985,043...36,993,131
Ensembl chr 3:36,985,043...36,993,131 		JBrowse link
G ESRRB estrogen related receptor beta involved_in ISO PMID:24481529
(MGI:5905261|PMID:24481529)		 BHF-UCL PMID:24481529 MGI:5905261 RGD:12910990 NCBI chr14:76,310,777...76,501,837
Ensembl chr14:76,310,712...76,501,837 		JBrowse link
G GCK glucokinase involved_in IMP (PMID:8878425) UniProt
UniProt		 PMID:8878425 NCBI chr 7:44,143,213...44,189,439
Ensembl chr 7:44,143,213...44,198,170 		JBrowse link
G IGF1 insulin like growth factor 1 involved_in IDA (PMID:21076856) UniProt
UniProt		 PMID:21076856 NCBI chr12:102,395,874...102,481,839
Ensembl chr12:102,395,874...102,481,744 		JBrowse link
G IGF2 insulin like growth factor 2 involved_in ISS
IEA		 BHF-UCL
BHF-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr11:2,129,117...2,149,566
Ensembl chr11:2,129,112...2,158,391 		JBrowse link
G INS insulin involved_in IDA (PMID:17925406) BHF-UCL
BHF-UCL		 PMID:17925406 NCBI chr11:2,159,779...2,161,209
Ensembl chr11:2,159,779...2,161,221 		JBrowse link
G INSR insulin receptor involved_in IDA
IEA		 (PMID:17925406) BHF-UCL
BHF-UCL
Ensembl		 PMID:17925406 GO_REF:0000107 NCBI chr19:7,112,265...7,294,414
Ensembl chr19:7,112,255...7,294,414 		JBrowse link
G IRS1 insulin receptor substrate 1 involved_in IMP
NAS		 (PMID:16814735)
(PMID:17925406)		 BHF-UCL
BHF-UCL		 PMID:16814735 PMID:17925406 NCBI chr 2:226,731,312...226,799,820
Ensembl chr 2:226,731,312...226,799,820 		JBrowse link
G IRS2 insulin receptor substrate 2 involved_in IMP
NAS		 (PMID:16814735)
(PMID:17925406)		 BHF-UCL
BHF-UCL		 PMID:16814735 PMID:17925406 NCBI chr13:109,752,695...109,786,583
Ensembl chr13:109,752,695...109,786,583 		JBrowse link
G PPP1R3E protein phosphatase 1 regulatory subunit 3E involved_in ISS (PMID:15752363) UniProt
UniProt		 PMID:15752363 NCBI chr14:23,295,652...23,302,859
Ensembl chr14:23,295,652...23,302,859 		JBrowse link
G PPP1R3G protein phosphatase 1 regulatory subunit 3G involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:5000151|PMID:21471512) Ensembl
MGI
Ensembl		 PMID:21471512 GO_REF:0000107 MGI:5000151 NCBI chr 6:5,085,341...5,089,487
Ensembl chr 6:5,085,341...5,089,487 		JBrowse link
G PTH parathyroid hormone involved_in IDA (PMID:21076856) UniProt
UniProt		 PMID:21076856 NCBI chr11:13,492,054...13,496,181
Ensembl chr11:13,492,054...13,496,181 		JBrowse link
G SORBS1 sorbin and SH3 domain containing 1 involved_in ISS (PMID:11001060) BHF-UCL
BHF-UCL		 PMID:11001060 NCBI chr10:95,311,773...95,561,371
Ensembl chr10:95,311,771...95,561,414 		JBrowse link
regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKT1 AKT serine/threonine kinase 1 involved_in IMP (PMID:8940145) BHF-UCL
BHF-UCL		 PMID:8940145 NCBI chr14:104,769,349...104,795,748
Ensembl chr14:104,769,349...104,795,751 		JBrowse link
G INPP5K inositol polyphosphate-5-phosphatase K involved_in ISS
IEA		 UniProt
Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr17:1,494,577...1,516,612
Ensembl chr17:1,494,577...1,516,742 		JBrowse link
G MTOR mechanistic target of rapamycin kinase ISO RGD PMID:17142137 RGD:1625611 NCBI chr 1:11,106,535...11,262,551
Ensembl chr 1:11,106,535...11,262,556 		JBrowse link
G PPP1CA protein phosphatase 1 catalytic subunit alpha involved_in IEA
ISO		 Ensembl
Ensembl
RGD		 PMID:7720853 GO_REF:0000107 RGD:2304267 NCBI chr11:67,398,183...67,401,858
Ensembl chr11:67,398,181...67,421,183 		JBrowse link
G PPP1CB protein phosphatase 1 catalytic subunit beta involved_in IEA
ISO		 Ensembl
RGD		 PMID:7720853 GO_REF:0000107 RGD:2304267 NCBI chr 2:28,751,604...28,802,940
Ensembl chr 2:28,751,640...28,802,940 		JBrowse link
G PPP1R3A protein phosphatase 1 regulatory subunit 3A involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 7:113,876,777...113,919,009
Ensembl chr 7:113,876,777...114,075,920 		JBrowse link
G PPP1R3B protein phosphatase 1 regulatory subunit 3B involved_in IBA
IEA
ISO		 (PMID:21873635) GO_Central
GO_Central
Ensembl
RGD		 PMID:7720853 PMID:11716774 PMID:21873635 GO_REF:0000107 RGD:2304267 RGD:2306167 NCBI chr 8:9,136,255...9,151,539
Ensembl chr 8:9,136,255...9,151,574 		JBrowse link
G PPP1R3C protein phosphatase 1 regulatory subunit 3C involved_in IBA
ISO		 (PMID:21873635) GO_Central
GO_Central
RGD		 PMID:11716774 PMID:21873635 RGD:2306167 NCBI chr10:91,628,442...91,633,071
Ensembl chr10:91,628,442...91,633,071 		JBrowse link
G PPP1R3D protein phosphatase 1 regulatory subunit 3D involved_in IBA
IEA
ISO		 (PMID:21873635) GO_Central
Ensembl
GO_Central
RGD		 PMID:11716774 PMID:21873635 GO_REF:0000107 RGD:2306167 NCBI chr20:59,936,663...59,940,305
Ensembl chr20:59,936,663...59,940,305 		JBrowse link
G PPP1R3E protein phosphatase 1 regulatory subunit 3E involved_in IBA
ISO		 (PMID:21873635) GO_Central
GO_Central
RGD		 PMID:15752363 PMID:21873635 RGD:2306166 NCBI chr14:23,295,652...23,302,859
Ensembl chr14:23,295,652...23,302,859 		JBrowse link
G PPP1R3F protein phosphatase 1 regulatory subunit 3F involved_in
acts_upstream_of_or_within		 IBA
IDA		 (PMID:21873635)
(PMID:21668450)		 GO_Central
MGI
GO_Central
MGI		 PMID:21668450 PMID:21873635 NCBI chr  X:49,269,793...49,301,469
Ensembl chr  X:49,269,793...49,301,461 		JBrowse link
G PPP1R3G protein phosphatase 1 regulatory subunit 3G involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 6:5,085,341...5,089,487
Ensembl chr 6:5,085,341...5,089,487 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19815
    metabolic process 13216
      cellular metabolic process 10388
        generation of precursor metabolites and energy 496
          energy derivation by oxidation of organic compounds 374
            energy reserve metabolic process 100
              glycogen metabolic process 87
                glycogen biosynthetic process 53
                  negative regulation of glycogen biosynthetic process 12
                  positive regulation of glycogen biosynthetic process 18
                  regulation of glycogen biosynthetic process + 37
paths to the root