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ONTOLOGY REPORT - ANNOTATIONS

Term:glycogen biosynthetic process
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Accession:GO:0005978 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.
Synonyms:exact_synonym: glycogen anabolism;   glycogen biosynthesis;   glycogen formation;   glycogen synthesis
 xref: MetaCyc:GLYCOGENSYNTH-PWY


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glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACADM acyl-CoA dehydrogenase medium chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:70,852,223...70,881,979
Ensembl chr 6:70,853,061...70,878,668 		JBrowse link
G AGL amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase involved_in IEA UniProt
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr 6:50,039,661...50,112,543
Ensembl chr 6:50,041,947...50,112,279 		JBrowse link
G AKT1 AKT serine/threonine kinase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 8:72,317,399...72,335,686
Ensembl chr 8:72,317,869...72,335,193 		JBrowse link
G EPM2A EPM2A glucan phosphatase, laforin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:6161945|PMID:28536304) MGI
Ensembl		 PMID:28536304 GO_REF:0000107 MGI:6161945 NCBI chr 1:36,835,775...36,977,653
Ensembl chr 1:36,870,594...36,931,847 		JBrowse link
G EPM2AIP1 EPM2A interacting protein 1 acts_upstream_of
involved_in		 ISO
IEA		 (MGI:5543825|PMID:24142699) MGI
Ensembl		 PMID:24142699 GO_REF:0000107 MGI:5543825 NCBI chr23:6,880,996...6,888,863
Ensembl chr23:6,886,885...6,888,711 		JBrowse link
G GBE1 1,4-alpha-glucan branching enzyme 1 involved_in IBA
IEA
ISO		 (PMID:21873635) GO_Central
InterPro
InterPro
RGD		 PMID:6449198 PMID:21873635 GO_REF:0000002 RGD:1642743 NCBI chr31:5,742,744...6,010,881
Ensembl chr31:5,742,744...6,093,612 		JBrowse link
G GCK glucokinase ISO RGD PMID:17028192 RGD:1581879
G GYG1 glycogenin 1 involved_in ISO
IEA
IBA		 (PMID:21873635) RGD
Ensembl
GO_Central		 PMID:8224611 PMID:10710493 PMID:21873635 GO_REF:0000107 RGD:2303736 RGD:2304070 NCBI chr23:43,831,942...43,864,135
Ensembl chr23:43,826,216...43,864,019 		JBrowse link
G GYG2 glycogenin 2 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr  X:1,476,306...1,512,915
Ensembl chr  X:1,475,951...1,511,534 		JBrowse link
G GYS1 glycogen synthase 1 involved_in
acts_upstream_of_or_within		 ISO
IEA
IBA		 (PMID:21873635)
(MGI:3052259|PMID:15282316)		 RGD
UniProt
Ensembl
InterPro
UniProt
GO_Central
MGI		 PMID:6449198 PMID:7671134 PMID:15282316 PMID:21873635 GO_REF:0000002 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 MGI:3052259 RGD:1642743 RGD:2303748 NCBI chr 1:107,401,056...107,417,273
Ensembl chr 1:107,401,114...107,417,122 		JBrowse link
G GYS2 glycogen synthase 2 involved_in IEA
ISO
IBA		 (PMID:21873635) UniProt
UniProt
Ensembl
InterPro
RGD
GO_Central		 PMID:114169 PMID:6449198 PMID:15138155 PMID:21873635 GO_REF:0000002 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 RGD:1582633 RGD:1642743 RGD:2304128 NCBI chr27:25,509,833...25,558,874
Ensembl chr27:25,509,655...25,558,844 		JBrowse link
G NHLRC1 NHL repeat containing E3 ubiquitin protein ligase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:6161945|PMID:28536304) MGI
Ensembl		 PMID:28536304 GO_REF:0000107 MGI:6161945 NCBI chr35:16,920,687...16,921,829
Ensembl chr35:16,920,687...16,921,829 		JBrowse link
G NR1D1 nuclear receptor subfamily 1 group D member 1 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 9:22,461,556...22,469,243
Ensembl chr 9:22,461,705...22,469,053 		JBrowse link
G PER2 period circadian regulator 2 involved_in ISO (MGI:4429726|PMID:20159955) UniProt PMID:20159955 MGI:4429726 NCBI chr25:48,716,499...48,761,617
Ensembl chr25:48,717,173...48,758,755 		JBrowse link
G PHKG1 phosphorylase kinase catalytic subunit gamma 1 involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr 6:565,560...577,754
Ensembl chr 6:565,711...577,739 		JBrowse link
G PHKG2 phosphorylase kinase catalytic subunit gamma 2 involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr 6:17,418,927...17,428,431
Ensembl chr 6:17,418,926...17,428,359 		JBrowse link
G PPP1R3C protein phosphatase 1 regulatory subunit 3C involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1353778|PMID:10683377) UniProt
UniProt
Ensembl
MGI		 PMID:10683377 GO_REF:0000104 GO_REF:0000107 MGI:1353778 NCBI chr28:6,167,532...6,172,057
Ensembl chr28:6,168,917...6,172,004 		JBrowse link
G PPP1R3G protein phosphatase 1 regulatory subunit 3G acts_upstream_of ISO (MGI:5000151|PMID:21471512) MGI PMID:21471512 MGI:5000151
G PRKAG3 protein kinase AMP-activated non-catalytic subunit gamma 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3583413|PMID:15857891) MGI
Ensembl		 PMID:15857891 GO_REF:0000107 MGI:3583413 NCBI chr37:25,405,794...25,414,745
Ensembl chr37:25,406,190...25,414,961 		JBrowse link
G PTGES3 prostaglandin E synthase 3 acts_upstream_of_or_within ISO (MGI:3714109|PMID:17438133) MGI PMID:17438133 MGI:3714109 NCBI chr10:885,744...903,814
Ensembl chr10:870,392...909,161 		JBrowse link
G UGP2 UDP-glucose pyrophosphorylase 2 involved_in IEA UniProt
Ensembl
UniProt		 GO_REF:0000041 GO_REF:0000107 NCBI chr10:63,532,366...63,598,362
Ensembl chr10:63,533,171...63,597,452 		JBrowse link
negative regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:251,985...322,081
Ensembl chr 1:252,103...322,718 		JBrowse link
G GFPT1 glutamine--fructose-6-phosphate transaminase 1 ISO RGD PMID:8349040 RGD:1625425 NCBI chr10:68,067,817...68,125,001
Ensembl chr10:68,073,062...68,125,007 		JBrowse link
G GRB10 growth factor receptor bound protein 10 involved_in ISO PMID:11223174 BHF-UCL PMID:11223174 RGD:8553640 NCBI chr18:1,890,689...2,014,836
Ensembl chr18:1,890,792...2,014,839 		JBrowse link
G INPP5K inositol polyphosphate-5-phosphatase K involved_in ISS
IEA
IBA		 (PMID:21873635) UniProt
Ensembl
GO_Central		 PMID:21873635 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:45,660,445...45,680,407
Ensembl chr 9:45,660,446...45,680,363 		JBrowse link
G INSR insulin receptor ISO RGD PMID:26300412 RGD:11529553 NCBI chr20:52,017,261...52,136,061
Ensembl chr20:52,021,887...52,136,046 		JBrowse link
G MIR15B microRNA mir-15b acts_upstream_of ISO (PMID:26179126) ARUK-UCL PMID:26179126 NCBI chr34:26,460,663...26,460,722
Ensembl chr34:26,460,645...26,460,741 		JBrowse link
G MIR195 microRNA mir-195 acts_upstream_of ISO (PMID:25240198) ARUK-UCL PMID:25240198 NCBI chr 5:32,045,450...32,045,510
Ensembl chr 5:32,045,450...32,045,510 		JBrowse link
G PASK PAS domain containing serine/threonine kinase involved_in IBA
IEA		 (PMID:21873635) GO_Central
Ensembl		 PMID:21873635 GO_REF:0000107 NCBI chr25:51,145,094...51,181,040
Ensembl chr25:51,144,912...51,177,818 		JBrowse link
positive regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKT1 AKT serine/threonine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:72,317,399...72,335,686
Ensembl chr 8:72,317,869...72,335,193 		JBrowse link
G AKT2 AKT serine/threonine kinase 2 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 1:113,359,038...113,407,119
Ensembl chr 1:113,359,575...113,407,131 		JBrowse link
G C1QTNF2 C1q and TNF related 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3055459|PMID:15231994) Ensembl
MGI		 PMID:15231994 GO_REF:0000107 MGI:3055459 NCBI chr 4:50,352,245...50,372,412
Ensembl chr 4:50,367,910...50,372,597 		JBrowse link
G CD36 CD36 molecule ISO RGD PMID:14640889 RGD:1600636 NCBI chr18:20,299,808...20,375,856
Ensembl chr18:20,339,050...20,372,639 		JBrowse link
G DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr10:9,982,245...9,994,327
Ensembl chr10:9,980,080...9,991,934 		JBrowse link
G EPM2AIP1 EPM2A interacting protein 1 acts_upstream_of_or_within
involved_in		 ISO
IBA
IEA		 (MGI:5543825|PMID:24142699)
(PMID:21873635)		 MGI
GO_Central
Ensembl		 PMID:21873635 PMID:24142699 GO_REF:0000107 MGI:5543825 NCBI chr23:6,880,996...6,888,863
Ensembl chr23:6,886,885...6,888,711 		JBrowse link
G ESRRB estrogen related receptor beta involved_in ISO PMID:24481529
(MGI:5905261|PMID:24481529)		 BHF-UCL PMID:24481529 MGI:5905261 RGD:12910990 NCBI chr 8:49,253,877...49,424,148
Ensembl chr 8:49,253,332...49,421,332 		JBrowse link
G GCK glucokinase involved_in IEA Ensembl GO_REF:0000107
G IGF1 insulin like growth factor 1 involved_in ISS
IEA		 UniProt
Ensembl
Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr15:41,203,320...41,275,964
Ensembl chr15:41,202,518...41,275,794 		JBrowse link
G IGF2 insulin like growth factor 2 involved_in ISO (MGI:4438697|PMID:20032056) BHF-UCL PMID:20032056 MGI:4438697 NCBI chr18:46,294,036...46,311,982
Ensembl chr18:46,294,019...46,311,982 		JBrowse link
G INS insulin involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr18:46,324,047...46,324,933
Ensembl chr18:46,324,041...46,325,122 		JBrowse link
G INSR insulin receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:52,017,261...52,136,061
Ensembl chr20:52,021,887...52,136,046 		JBrowse link
G IRS1 insulin receptor substrate 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:39,624,554...39,687,991 JBrowse link
G IRS2 insulin receptor substrate 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:58,197,016...58,229,026
Ensembl chr22:58,223,387...58,227,535 		JBrowse link
G PPP1R3E protein phosphatase 1 regulatory subunit 3E involved_in ISO PMID:15752363 UniProt PMID:15752363 RGD:2306166 NCBI chr 8:3,559,296...3,564,849
Ensembl chr 8:3,563,457...3,564,524 		JBrowse link
G PPP1R3G protein phosphatase 1 regulatory subunit 3G acts_upstream_of_or_within ISO (MGI:5000151|PMID:21471512) MGI PMID:21471512 MGI:5000151
G PTH parathyroid hormone involved_in ISS
IEA		 UniProt
UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr21:36,417,062...36,419,967
Ensembl chr21:36,417,058...36,419,967 		JBrowse link
G SORBS1 sorbin and SH3 domain containing 1 involved_in ISO (MGI:3690172|PMID:11001060) BHF-UCL PMID:11001060 MGI:3690172 NCBI chr28:8,834,530...9,063,739
Ensembl chr28:8,837,338...9,063,777 		JBrowse link
regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKT1 AKT serine/threonine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:72,317,399...72,335,686
Ensembl chr 8:72,317,869...72,335,193 		JBrowse link
G INPP5K inositol polyphosphate-5-phosphatase K involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:45,660,445...45,680,407
Ensembl chr 9:45,660,446...45,680,363 		JBrowse link
G MTOR mechanistic target of rapamycin kinase ISO RGD PMID:17142137 RGD:1625611 NCBI chr 2:84,818,893...84,939,283
Ensembl chr 2:84,787,708...84,939,114 		JBrowse link
G PPP1CA protein phosphatase 1 catalytic subunit alpha ISO RGD PMID:7720853 RGD:2304267 NCBI chr18:50,062,352...50,065,166
Ensembl chr18:50,062,352...50,065,166 		JBrowse link
G PPP1CB protein phosphatase 1 catalytic subunit beta ISO RGD PMID:7720853 RGD:2304267 NCBI chr17:22,680,691...22,699,999
Ensembl chr17:22,679,783...22,699,999 		JBrowse link
G PPP1R3A protein phosphatase 1 regulatory subunit 3A involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:53,169,836...53,216,817
Ensembl chr14:53,170,954...53,217,169 		JBrowse link
G PPP1R3B protein phosphatase 1 regulatory subunit 3B involved_in ISO
IBA		 (PMID:21873635) RGD
GO_Central		 PMID:7720853 PMID:11716774 PMID:21873635 RGD:2304267 RGD:2306167 NCBI chr16:35,372,928...35,384,640
Ensembl chr16:35,372,859...35,381,921 		JBrowse link
G PPP1R3C protein phosphatase 1 regulatory subunit 3C involved_in IBA
ISO		 (PMID:21873635) GO_Central
RGD		 PMID:11716774 PMID:21873635 RGD:2306167 NCBI chr28:6,167,532...6,172,057
Ensembl chr28:6,168,917...6,172,004 		JBrowse link
G PPP1R3D protein phosphatase 1 regulatory subunit 3D involved_in IBA
ISO		 (PMID:21873635) GO_Central
RGD		 PMID:11716774 PMID:21873635 RGD:2306167 NCBI chr24:44,550,028...44,551,556
Ensembl chr24:44,550,320...44,551,219 		JBrowse link
G PPP1R3E protein phosphatase 1 regulatory subunit 3E involved_in ISO
IBA		 (PMID:21873635) RGD
GO_Central		 PMID:15752363 PMID:21873635 RGD:2306166 NCBI chr 8:3,559,296...3,564,849
Ensembl chr 8:3,563,457...3,564,524 		JBrowse link
G PPP1R3F protein phosphatase 1 regulatory subunit 3F involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 (PMID:21873635)
(PMID:21668450)		 GO_Central
Ensembl
MGI		 PMID:21668450 PMID:21873635 GO_REF:0000107 NCBI chr  X:42,362,335...42,378,480
Ensembl chr  X:42,362,370...42,378,012 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17428
    metabolic process 11363
      cellular metabolic process 8920
        generation of precursor metabolites and energy 401
          energy derivation by oxidation of organic compounds 336
            energy reserve metabolic process 91
              glycogen metabolic process 82
                glycogen biosynthetic process 49
                  negative regulation of glycogen biosynthetic process 8
                  positive regulation of glycogen biosynthetic process 18
                  regulation of glycogen biosynthetic process + 33
paths to the root