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ONTOLOGY REPORT - ANNOTATIONS

Term:glycogen biosynthetic process
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Accession:GO:0005978 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.
Synonyms:exact_synonym: glycogen anabolism;   glycogen biosynthesis;   glycogen formation;   glycogen synthesis
 xref: MetaCyc:GLYCOGENSYNTH-PWY


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glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACADM acyl-CoA dehydrogenase medium chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:74,939,477...74,978,815
Ensembl chr 1:76,911,763...76,950,840 		JBrowse link
G AGL amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 1:102,506,234...102,580,183
Ensembl chr 1:101,226,120...101,299,511 		JBrowse link
G AKT1 AKT serine/threonine kinase 1 involved_in ISO PMID:10400692 UniProt PMID:10400692 RGD:8553850 NCBI chr14:85,417,229...85,444,722
Ensembl chr14:105,208,128...105,236,756 		JBrowse link
G EPM2A EPM2A glucan phosphatase, laforin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:6161945|PMID:28536304) MGI
Ensembl		 PMID:28536304 GO_REF:0000107 MGI:6161945 NCBI chr 6:143,179,097...143,525,223 JBrowse link
G EPM2AIP1 EPM2A interacting protein 1 acts_upstream_of
involved_in		 ISO
IEA		 (MGI:5543825|PMID:24142699) MGI
Ensembl		 PMID:24142699 GO_REF:0000107 MGI:5543825 NCBI chr 3:36,894,383...36,899,772
Ensembl chr 3:37,187,354...37,189,177 		JBrowse link
G GBE1 1,4-alpha-glucan branching enzyme 1 involved_in ISO
IEA		 RGD
Ensembl
InterPro		 PMID:6449198 GO_REF:0000002 GO_REF:0000107 RGD:1642743 NCBI chr 3:81,587,604...81,861,214
Ensembl chr 3:83,632,215...83,904,546 		JBrowse link
G GCK glucokinase ISO RGD PMID:17028192 RGD:1581879 NCBI chr 7:44,857,604...44,903,683
Ensembl chr 7:44,926,848...44,937,751 		JBrowse link
G GYG1 glycogenin 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:8224611 PMID:10710493 GO_REF:0000107 RGD:2303736 RGD:2304070 NCBI chr 3:146,015,629...146,055,412
Ensembl chr 3:153,595,624...153,632,740 		JBrowse link
G GYG2 glycogenin 2 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr  X:2,780,589...2,834,045 JBrowse link
G GYS1 glycogen synthase 1 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (MGI:3052259|PMID:15282316) RGD
Ensembl
UniProt
InterPro
MGI		 PMID:6449198 PMID:7671134 PMID:15282316 GO_REF:0000002 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 MGI:3052259 RGD:1642743 RGD:2303748 NCBI chr19:45,970,127...45,995,269
Ensembl chr19:54,761,479...54,786,726 		JBrowse link
G GYS2 glycogen synthase 2 involved_in ISO
IEA		 RGD
Ensembl
UniProt
InterPro		 PMID:114169 PMID:6449198 PMID:15138155 GO_REF:0000002 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 RGD:1582633 RGD:1642743 RGD:2304128 NCBI chr12:64,693,285...64,761,855
Ensembl chr12:67,297,131...67,365,773 		JBrowse link
G NHLRC1 NHL repeat containing E3 ubiquitin protein ligase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:6161945|PMID:28536304) MGI
Ensembl		 PMID:28536304 GO_REF:0000107 MGI:6161945 NCBI chr 6:17,969,146...17,970,962
Ensembl chr 6:18,321,728...18,322,915 		JBrowse link
G NR1D1 nuclear receptor subfamily 1 group D member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:17,188,390...17,196,315
Ensembl chr17:17,409,669...17,417,600 		JBrowse link
G PER2 period circadian regulator 2 involved_in ISO (MGI:4429726|PMID:20159955) UniProt PMID:20159955 MGI:4429726 NCBI chr2B:125,477,021...125,521,577
Ensembl chr2B:244,328,122...244,371,040 		JBrowse link
G PHKG1 phosphorylase kinase catalytic subunit gamma 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 7:56,693,252...56,706,474
Ensembl chr 7:57,115,921...57,139,516 		JBrowse link
G PHKG2 phosphorylase kinase catalytic subunit gamma 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr16:24,211,929...24,221,756
Ensembl chr16:31,115,033...31,127,216 		JBrowse link
G PPP1R3C protein phosphatase 1 regulatory subunit 3C acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1353778|PMID:10683377) MGI
UniProt
Ensembl		 PMID:10683377 GO_REF:0000104 GO_REF:0000107 MGI:1353778 NCBI chr10:88,377,396...88,382,205
Ensembl chr10:91,900,112...91,904,764 		JBrowse link
G PPP1R3G protein phosphatase 1 regulatory subunit 3G acts_upstream_of
involved_in		 ISO
IEA		 (MGI:5000151|PMID:21471512) MGI
Ensembl		 PMID:21471512 GO_REF:0000107 MGI:5000151 NCBI chr 6:4,918,313...4,920,187
Ensembl chr 6:5,103,955...5,105,031 		JBrowse link
G PRKAG3 protein kinase AMP-activated non-catalytic subunit gamma 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3583413|PMID:15857891) MGI
Ensembl		 PMID:15857891 GO_REF:0000107 MGI:3583413 NCBI chr2B:106,085,299...106,139,298
Ensembl chr2B:224,679,831...224,687,705 		JBrowse link
G PTGES3 prostaglandin E synthase 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3714109|PMID:17438133) MGI
Ensembl		 PMID:17438133 GO_REF:0000107 MGI:3714109 NCBI chr12:32,221,908...32,247,228
Ensembl chr12:32,476,835...32,503,181 		JBrowse link
G UGP2 UDP-glucose pyrophosphorylase 2 involved_in IEA UniProt
Ensembl		 GO_REF:0000041 GO_REF:0000107 NCBI chr2A:63,906,778...63,959,346
Ensembl chr2A:65,043,871...65,084,175 		JBrowse link
negative regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:129,591,858...129,673,000
Ensembl chr 6:133,698,640...133,783,644 		JBrowse link
G GFPT1 glutamine--fructose-6-phosphate transaminase 1 ISO RGD PMID:8349040 RGD:1625425 NCBI chr2A:69,363,229...69,430,182
Ensembl chr2A:70,488,763...70,551,141 		JBrowse link
G GRB10 growth factor receptor bound protein 10 involved_in ISO PMID:11223174 BHF-UCL PMID:11223174 RGD:8553640 NCBI chr 7:51,230,945...51,434,560
Ensembl chr 7:51,474,166...51,666,638 		JBrowse link
G INPP5K inositol polyphosphate-5-phosphatase K involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:1,477,511...1,499,765
Ensembl chr17:1,377,312...1,399,373 		JBrowse link
G INSR insulin receptor ISO RGD PMID:26300412 RGD:11529553 NCBI chr19:6,393,407...6,578,234
Ensembl chr19:7,260,246...7,414,889 		JBrowse link
G PASK PAS domain containing serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:128,364,745...128,418,837
Ensembl chr2B:247,162,011...247,214,803 		JBrowse link
positive regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKT1 AKT serine/threonine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:85,417,229...85,444,722
Ensembl chr14:105,208,128...105,236,756 		JBrowse link
G AKT2 AKT serine/threonine kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:37,275,799...37,331,971
Ensembl chr19:45,791,800...45,840,271 		JBrowse link
G C1QTNF2 C1q and TNF related 2 acts_upstream_of_or_within ISO (MGI:3055459|PMID:15231994) MGI PMID:15231994 MGI:3055459 NCBI chr 5:155,738,893...155,761,650
Ensembl chr 5:162,433,415...162,456,123 		JBrowse link
G CD36 CD36 molecule ISO RGD PMID:14640889 RGD:1600636 NCBI chr 7:72,566,478...72,643,517
Ensembl chr 7:86,265,114...86,305,865 		JBrowse link
G DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:21,241,325...21,260,321
Ensembl chr12:21,757,436...21,767,505 		JBrowse link
G EPM2AIP1 EPM2A interacting protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5543825|PMID:24142699) MGI
Ensembl		 PMID:24142699 GO_REF:0000107 MGI:5543825 NCBI chr 3:36,894,383...36,899,772
Ensembl chr 3:37,187,354...37,189,177 		JBrowse link
G ESRRB estrogen related receptor beta involved_in ISO PMID:24481529
(MGI:5905261|PMID:24481529)		 BHF-UCL PMID:24481529 MGI:5905261 RGD:12910990 NCBI chr14:56,868,361...57,060,552
Ensembl chr14:75,839,333...76,266,895 		JBrowse link
G GCK glucokinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:44,857,604...44,903,683
Ensembl chr 7:44,926,848...44,937,751 		JBrowse link
G IGF1 insulin like growth factor 1 involved_in ISO (PMID:21076856) UniProt PMID:21076856 NCBI chr12:99,986,887...100,066,773
Ensembl chr12:103,385,911...103,462,177 		JBrowse link
G IGF2 insulin like growth factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:2,170,190...2,199,442
Ensembl chr11:2,202,743...2,228,890 		JBrowse link
G INS insulin involved_in ISO (PMID:17925406) BHF-UCL PMID:17925406 NCBI chr11:2,200,785...2,202,579
Ensembl chr11:2,218,117...2,231,666 		JBrowse link
G INSR insulin receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:6,393,407...6,578,234
Ensembl chr19:7,260,246...7,414,889 		JBrowse link
G IRS1 insulin receptor substrate 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:113,973,191...114,041,127
Ensembl chr2B:232,849,239...232,852,967 		JBrowse link
G IRS2 insulin receptor substrate 2 involved_in ISO (PMID:16814735) BHF-UCL PMID:16814735 NCBI chr13:90,886,095...90,917,724 JBrowse link
G PPP1R3E protein phosphatase 1 regulatory subunit 3E involved_in ISO PMID:15752363 UniProt PMID:15752363 RGD:2306166 NCBI chr14:4,118,827...4,122,294
Ensembl chr14:22,215,635...22,216,794 		JBrowse link
G PPP1R3G protein phosphatase 1 regulatory subunit 3G acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5000151|PMID:21471512) MGI
Ensembl		 PMID:21471512 GO_REF:0000107 MGI:5000151 NCBI chr 6:4,918,313...4,920,187
Ensembl chr 6:5,103,955...5,105,031 		JBrowse link
G PTH parathyroid hormone involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:13,653,777...13,657,901
Ensembl chr11:13,347,838...13,351,802 		JBrowse link
G SORBS1 sorbin and SH3 domain containing 1 involved_in ISO (MGI:3690172|PMID:11001060) BHF-UCL PMID:11001060 MGI:3690172 NCBI chr10:91,922,292...92,172,339
Ensembl chr10:95,432,824...95,559,022 		JBrowse link
regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKT1 AKT serine/threonine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:85,417,229...85,444,722
Ensembl chr14:105,208,128...105,236,756 		JBrowse link
G INPP5K inositol polyphosphate-5-phosphatase K involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:1,477,511...1,499,765
Ensembl chr17:1,377,312...1,399,373 		JBrowse link
G MTOR mechanistic target of rapamycin kinase ISO RGD PMID:17142137 RGD:1625611 NCBI chr 1:9,871,700...10,028,704
Ensembl chr 1:11,093,765...11,249,841 		JBrowse link
G PPP1CA protein phosphatase 1 catalytic subunit alpha ISO RGD PMID:7720853 RGD:2304267 NCBI chr11:62,756,659...62,760,369
Ensembl chr11:66,068,007...66,071,611 		JBrowse link
G PPP1CB protein phosphatase 1 catalytic subunit beta ISO RGD PMID:7720853 RGD:2304267 NCBI chr2A:28,758,176...28,809,561
Ensembl chr2A:28,862,083...28,889,401 		JBrowse link
G PPP1R3B protein phosphatase 1 regulatory subunit 3B ISO RGD PMID:7720853 PMID:11716774 RGD:2304267 RGD:2306167 NCBI chr 8:10,059,531...10,074,820 JBrowse link
G PPP1R3C protein phosphatase 1 regulatory subunit 3C ISO RGD PMID:11716774 RGD:2306167 NCBI chr10:88,377,396...88,382,205
Ensembl chr10:91,900,112...91,904,764 		JBrowse link
G PPP1R3D protein phosphatase 1 regulatory subunit 3D ISO RGD PMID:11716774 RGD:2306167 NCBI chr20:56,292,457...56,295,977 JBrowse link
G PPP1R3E protein phosphatase 1 regulatory subunit 3E ISO RGD PMID:15752363 RGD:2306166 NCBI chr14:4,118,827...4,122,294
Ensembl chr14:22,215,635...22,216,794 		JBrowse link
G PPP1R3F protein phosphatase 1 regulatory subunit 3F acts_upstream_of_or_within ISO (PMID:21668450) MGI PMID:21668450 NCBI chr  X:41,569,825...41,587,523 JBrowse link
Term paths to the root
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Term Annotations click to browse term
  biological_process 15372
    metabolic process 10006
      cellular metabolic process 7798
        generation of precursor metabolites and energy 375
          energy derivation by oxidation of organic compounds 300
            energy reserve metabolic process 86
              glycogen metabolic process 77
                glycogen biosynthetic process 46
                  negative regulation of glycogen biosynthetic process 6
                  positive regulation of glycogen biosynthetic process 18
                  regulation of glycogen biosynthetic process + 30
paths to the root