ONTOLOGY REPORT - ANNOTATIONS
Term: glycogen biosynthetic process
Accession: GO:0005978
browse the term
Definition: The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.
Synonyms: exact_synonym: glycogen anabolism; glycogen biosynthesis; glycogen formation; glycogen synthesis
xref: Reactome:R-HSA-3322077 "Glycogen synthesis"
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Acadm
acyl-CoA dehydrogenase medium chain
involved_in
IEA ISO
GO_REF:0000107 (PMID:18459129)
Ensembl RGD
PMID:18459129
GO_REF:0000107
NCBI chr 2:242,858,865...242,883,036
Ensembl chr 2:242,858,865...242,883,147
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Agl
amylo-alpha-1,6-glucosidase and 4-alpha-glucanotransferase
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 2:204,705,053...204,760,966
Ensembl chr 2:204,705,053...204,760,828
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Akt1
AKT serine/threonine kinase 1
involved_in
IMP IEA
PMID:10400692 GO_REF:0000043
UniProt
PMID:10400692
GO_REF:0000043, RGD:8553850
NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921
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Akt2
AKT serine/threonine kinase 2
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 1:82,877,228...82,933,828
Ensembl chr 1:82,883,547...82,933,817
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Epm2a
EPM2A glucan phosphatase, laforin
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2145264 (PMID:28536304) MGI:6118039 (PMID:17118331), (PMID:18040046), (PMID:31042462)
Ensembl RGD
PMID:17118331 PMID:18040046 PMID:28536304 PMID:31042462
GO_REF:0000107
NCBI chr 1:5,727,111...5,845,338
Ensembl chr 1:5,727,066...5,920,555
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Epm2aip1
EPM2A interacting protein 1
acts_upstream_of
ISO
MGI:3857785 (PMID:24142699)
RGD
PMID:24142699
NCBI chr 8:111,233,871...111,241,219
Ensembl chr 8:111,233,826...111,241,871
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Gbe1
1,4-alpha-glucan branching enzyme 1
involved_in
IDA IBA ISO
GO_REF:0000033 MGI:4868492|MGI:5293612|MGI:5767122 (PMID:21075835), (PMID:21856731), (PMID:31042462) (PMID:26199317)
GO_Central RGD
PMID:21075835 PMID:21856731 PMID:26199317 PMID:31042462 PMID:6449198
GO_REF:0000033, RGD:1642743
NCBI chr11:8,734,806...9,000,226
Ensembl chr11:8,734,820...9,000,210
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Gck
glucokinase
IDA
RGD
PMID:17028192
RGD:1581879
NCBI chr14:80,785,060...80,829,842
Ensembl chr14:80,785,060...80,826,995
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Gyg1
glycogenin 1
involved_in
IDA ISO IBA IEA
MGI:4364071 (PMID:33219378) GO_REF:0000033 GO_REF:0000117 GO_REF:0000041 (PMID:22160680)
RGD GO_Central UniProt
PMID:22160680 PMID:33219378 PMID:8224611 PMID:10710493
GO_REF:0000033 GO_REF:0000041 GO_REF:0000117, RGD:2303736 , RGD:2304070
NCBI chr 2:102,611,888...102,653,916
Ensembl chr 2:102,598,496...102,653,797
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Gys1
glycogen synthase 1
involved_in acts_upstream_of_or_within
IDA IBA ISO IEA
GO_REF:0000033 MGI:3052742 (PMID:15282316) MGI:4432767 (PMID:17118331), (PMID:20300197), (PMID:21356517), (PMID:33219378) GO_REF:0000041
GO_Central RGD UniProt
PMID:15282316 PMID:17118331 PMID:20300197 PMID:21356517 PMID:33219378 PMID:7671134 PMID:6449198 More...
GO_REF:0000033 GO_REF:0000041, RGD:2303748 , RGD:1642743
NCBI chr 1:95,915,443...95,935,292
Ensembl chr 1:95,915,443...95,935,292
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Gys2
glycogen synthase 2
involved_in
IDA ISO IBA IEA
MGI:4462836 (PMID:28483921), (PMID:31553910) GO_REF:0000033 (PMID:1731614), (PMID:9691087) PMID:11415431 GO_REF:0000041
RGD GO_Central UniProt
PMID:1731614 PMID:9691087 PMID:28483921 PMID:31553910 PMID:15138155 PMID:11415431 PMID:1731614 PMID:6449198 PMID:114169 More...
GO_REF:0000033 GO_REF:0000041, RGD:1582633 , RGD:8554625 , RGD:8554840 , RGD:1642743 , RGD:2304128
NCBI chr 4:175,365,054...175,406,228
Ensembl chr 4:175,365,054...175,406,228
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Nhlrc1
NHL repeat containing E3 ubiquitin protein ligase 1
acts_upstream_of_or_within involved_in
ISO
MGI:1341085 (PMID:28536304) MGI:3808349|MGI:5312923 (PMID:20538597), (PMID:31042462)
RGD
PMID:20538597 PMID:28536304 PMID:31042462
NCBI chr17:17,674,303...17,677,144
Ensembl chr17:17,674,319...17,677,148
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Nr1d1
nuclear receptor subfamily 1, group D, member 1
involved_in
IEA ISO ISS
GO_REF:0000107 UniProtKB:O54943 (PMID:20159955) GO_REF:0000024
Ensembl RGD UniProt
PMID:20159955
GO_REF:0000024 GO_REF:0000107
NCBI chr10:83,728,348...83,735,562
Ensembl chr10:83,728,318...83,735,705
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Per2
period circadian regulator 2
involved_in
ISS ISO
GO_REF:0000024 UniProtKB:Q3UV55 (PMID:20159955)
UniProt RGD
PMID:20159955
GO_REF:0000024
NCBI chr 9:92,007,289...92,049,551
Ensembl chr 9:92,007,296...92,049,459
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Pgm2
phosphoglucomutase 2
involved_in
ISO
MGI:95909 (PMID:24265765)
RGD
PMID:24265765
NCBI chr14:44,166,314...44,199,828
Ensembl chr14:44,164,425...44,199,967
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Ppp1r3c
protein phosphatase 1, regulatory subunit 3C
involved_in acts_upstream_of_or_within
ISS ISO IEA
GO_REF:0000024 (PMID:10683377) (PMID:9045612) GO_REF:0000104
UniProt RGD
PMID:9045612 PMID:10683377
GO_REF:0000024 GO_REF:0000104
NCBI chr 1:234,460,958...234,465,961
Ensembl chr 1:234,460,652...234,465,961
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Ppp1r3g
protein phosphatase 1, regulatory subunit 3G
acts_upstream_of
ISO
(PMID:21471512)
RGD
PMID:21471512
NCBI chr17:28,874,956...28,878,288
Ensembl chr17:28,876,482...28,877,525
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Ptges3
prostaglandin E synthase 3
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3701300 (PMID:17438133)
Ensembl RGD
PMID:17438133
GO_REF:0000107
NCBI chr 7:490,698...507,759
Ensembl chr 7:490,656...508,084
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Ugp2
UDP-glucose pyrophosphorylase 2
involved_in
IEA ISO
GO_REF:0000041 (PMID:32286295) (PMID:31820119)
UniProt RGD
PMID:31820119 PMID:32286295
GO_REF:0000041
NCBI chr14:95,456,330...95,497,483
Ensembl chr14:95,456,330...95,496,830
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1810024B03Rikl
RIKEN cDNA 1810024B03 gene like
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 3:139,125,202...139,171,387
Ensembl chr 3:139,125,193...139,158,041
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Enpp1
ectonucleotide pyrophosphatase/phosphodiesterase 1
involved_in
ISO
(PMID:11289049)
RGD
PMID:11289049
NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715
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Gfpt1
glutamine fructose-6-phosphate transaminase 1
IMP
RGD
PMID:8349040
RGD:1625425
NCBI chr 4:119,496,691...119,546,472
Ensembl chr 4:119,496,714...119,546,471
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Grb10
growth factor receptor bound protein 10
involved_in
IDA
PMID:11223174
BHF-UCL
PMID:11223174
RGD:8553640
NCBI chr14:86,495,051...86,602,800
Ensembl chr14:86,495,054...86,602,806
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Gsk3b
glycogen synthase kinase 3 beta
involved_in
ISO
(PMID:31553910)
RGD
PMID:31553910
NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646
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Inpp5k
inositol polyphosphate-5-phosphatase K
involved_in
ISO IBA
(PMID:12556481) (PMID:19250614) GO_REF:0000033
RGD GO_Central
PMID:12556481 PMID:19250614
GO_REF:0000033
NCBI chr10:60,474,262...60,495,813
Ensembl chr10:60,475,897...60,496,773
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Insr
insulin receptor
IEP
RGD
PMID:26300412
RGD:11529553
NCBI chr12:1,193,193...1,330,976
Ensembl chr12:1,197,100...1,330,883
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LOC102549716
high mobility group protein B1-like
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr17:14,845,351...14,924,605
Ensembl chr17:14,914,664...14,923,701 Ensembl chr17:14,914,664...14,923,701
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LOC108348275
sperm motility kinase-like
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
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LOC120093063
sperm motility kinase-like
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr16:64,258,717...64,385,668
Ensembl chr16:64,368,823...64,386,543
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LOC120101733
uncharacterized LOC120101733
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 3:138,389,404...138,405,290
Ensembl chr 3:138,381,970...138,405,275
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Mir15b
microRNA 15b
acts_upstream_of
ISO
(PMID:26179126)
RGD
PMID:26179126
NCBI chr 2:153,245,200...153,245,297
Ensembl chr 2:153,245,200...153,245,297
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Mir195
microRNA 195
acts_upstream_of
ISO
(PMID:25240198)
RGD
PMID:25240198
NCBI chr10:54,951,838...54,951,924
Ensembl chr10:54,951,838...54,951,924
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Pask
PAS domain containing serine/threonine kinase
involved_in
ISO IBA
(PMID:16275910) GO_REF:0000033
RGD GO_Central
PMID:16275910
GO_REF:0000033
NCBI chr 9:93,844,275...93,886,036
Ensembl chr 9:93,844,278...93,885,111
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Prkag3
protein kinase AMP-activated non-catalytic subunit gamma 3
acts_upstream_of_or_within
ISO
MGI:3055131 (PMID:15857891)
RGD
PMID:15857891
NCBI chr 9:76,295,715...76,304,959
Ensembl chr 9:76,295,715...76,304,959
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Akt1
AKT serine/threonine kinase 1
involved_in
ISO IEA
(PMID:16814735) GO_REF:0000107
RGD Ensembl
PMID:16814735
GO_REF:0000107
NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921
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Akt2
AKT serine/threonine kinase 2
involved_in
ISO IEA
(PMID:16814735) GO_REF:0000107
RGD Ensembl
PMID:16814735
GO_REF:0000107
NCBI chr 1:82,877,228...82,933,828
Ensembl chr 1:82,883,547...82,933,817
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C1qtnf2
C1q and TNF related 2
acts_upstream_of_or_within
ISO
(PMID:15231994)
RGD
PMID:15231994
NCBI chr10:27,941,948...27,958,926
Ensembl chr10:27,941,948...27,959,185
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Cd36
CD36 molecule
IDA
RGD
PMID:14640889
RGD:1600636
NCBI chr 4:17,317,343...17,410,084
Ensembl chr 4:17,354,466...17,513,903
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Dyrk2
dual specificity tyrosine phosphorylation regulated kinase 2
involved_in
ISO
(PMID:11311121)
RGD
PMID:11311121
NCBI chr 7:54,348,724...54,381,363
Ensembl chr 7:54,349,610...54,380,106
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Epm2aip1
EPM2A interacting protein 1
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:3857785 (PMID:24142699)
GO_Central RGD
PMID:24142699
GO_REF:0000033
NCBI chr 8:111,233,871...111,241,219
Ensembl chr 8:111,233,826...111,241,871
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Esrrb
estrogen-related receptor beta
involved_in
IDA ISO
PMID:24481529 (PMID:24481529)
RGD
PMID:24481529 PMID:24481529
RGD:12910990
NCBI chr 6:106,007,701...106,163,136
Ensembl chr 6:106,008,095...106,160,791
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Gck
glucokinase
involved_in
ISO IEA ISS
(PMID:8878425) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:8878425
GO_REF:0000024 GO_REF:0000107
NCBI chr14:80,785,060...80,829,842
Ensembl chr14:80,785,060...80,826,995
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Igf1
insulin-like growth factor 1
involved_in
ISO IEA ISS
(PMID:21076856) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:21076856
GO_REF:0000024 GO_REF:0000107
NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
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Igf2
insulin-like growth factor 2
acts_upstream_of
ISO
(PMID:20032056)
RGD
PMID:20032056
NCBI chr 1:197,814,409...197,831,802
Ensembl chr 1:197,814,410...197,823,018
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Ins2
insulin 2
involved_in
ISO
(PMID:17925406)
RGD
PMID:17925406
NCBI chr 1:197,843,277...197,992,522
Ensembl chr 1:197,843,281...197,864,775
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Insr
insulin receptor
involved_in acts_upstream_of
IEA ISO
GO_REF:0000107 (PMID:20032056) (PMID:17925406)
Ensembl RGD
PMID:17925406 PMID:20032056
GO_REF:0000107
NCBI chr12:1,193,193...1,330,976
Ensembl chr12:1,197,100...1,330,883
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Irs1
insulin receptor substrate 1
involved_in
ISO IEA
(PMID:16814735) GO_REF:0000107
RGD Ensembl
PMID:16814735
GO_REF:0000107
NCBI chr 9:83,552,964...83,605,797
Ensembl chr 9:83,548,944...83,606,122
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Irs2
insulin receptor substrate 2
involved_in
ISO
(PMID:16814735)
RGD
PMID:16814735
NCBI chr16:78,488,249...78,512,482
Ensembl chr16:78,485,045...78,512,482
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Ppp1ca
protein phosphatase 1 catalytic subunit alpha
involved_in
ISO
(PMID:31553910)
RGD
PMID:31553910
NCBI chr 1:201,485,117...201,488,734
Ensembl chr 1:201,485,085...201,497,327
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Ppp1r3b
protein phosphatase 1, regulatory subunit 3B
involved_in
ISO
(PMID:31553910)
RGD
PMID:31553910
NCBI chr16:56,830,011...56,842,395
Ensembl chr16:56,829,660...56,842,406
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Ppp1r3e
protein phosphatase 1, regulatory subunit 3E
involved_in
IMP
PMID:15752363
UniProt
PMID:15752363
RGD:2306166
NCBI chr15:28,348,443...28,349,603
Ensembl chr15:28,347,854...28,349,603
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Ppp1r3g
protein phosphatase 1, regulatory subunit 3G
acts_upstream_of_or_within involved_in
ISO
(PMID:21471512) (PMID:31553910)
RGD
PMID:21471512 PMID:31553910
NCBI chr17:28,874,956...28,878,288
Ensembl chr17:28,876,482...28,877,525
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Pth
parathyroid hormone
involved_in
ISS ISO
GO_REF:0000024 (PMID:21076856)
UniProt RGD
PMID:21076856
GO_REF:0000024
NCBI chr 1:167,508,121...167,511,530
Ensembl chr 1:167,508,598...167,511,530
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Sorbs1
sorbin and SH3 domain containing 1
involved_in
ISO
(PMID:11001060)
RGD
PMID:11001060
NCBI chr 1:239,107,882...239,330,276
Ensembl chr 1:239,108,777...239,330,169
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Akt1
AKT serine/threonine kinase 1
involved_in
ISO
(PMID:8940145)
RGD
PMID:8940145
NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921
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Inpp5k
inositol polyphosphate-5-phosphatase K
involved_in
ISO
(PMID:19250614)
RGD
PMID:19250614
NCBI chr10:60,474,262...60,495,813
Ensembl chr10:60,475,897...60,496,773
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Mtor
mechanistic target of rapamycin kinase
IDA IMP
RGD
PMID:17142137 PMID:17142137
RGD:1625611 , RGD:1625611
NCBI chr 5:158,884,856...158,994,311
Ensembl chr 5:158,884,804...158,994,311
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Ppp1ca
protein phosphatase 1 catalytic subunit alpha
IDA
RGD
PMID:7720853
RGD:2304267
NCBI chr 1:201,485,117...201,488,734
Ensembl chr 1:201,485,085...201,497,327
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Ppp1cb
protein phosphatase 1 catalytic subunit beta
IDA
RGD
PMID:7720853
RGD:2304267
NCBI chr 6:23,958,813...23,992,841
Ensembl chr 6:23,960,998...23,992,824
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Ppp1r3a
protein phosphatase 1, regulatory subunit 3A
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 4:42,937,353...42,980,195
Ensembl chr 4:42,939,599...42,980,638
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Ppp1r3b
protein phosphatase 1, regulatory subunit 3B
involved_in
IDA IBA
GO_REF:0000033
GO_Central RGD
PMID:7720853 PMID:11716774
GO_REF:0000033, RGD:2304267 , RGD:2306167
NCBI chr16:56,830,011...56,842,395
Ensembl chr16:56,829,660...56,842,406
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Ppp1r3c
protein phosphatase 1, regulatory subunit 3C
involved_in
IDA IBA
GO_REF:0000033
GO_Central RGD
PMID:11716774
GO_REF:0000033, RGD:2306167
NCBI chr 1:234,460,958...234,465,961
Ensembl chr 1:234,460,652...234,465,961
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Ppp1r3d
protein phosphatase 1, regulatory subunit 3D
involved_in
IDA IBA
GO_REF:0000033
GO_Central RGD
PMID:11716774
GO_REF:0000033, RGD:2306167
NCBI chr 3:165,502,384...165,505,455
Ensembl chr 3:165,502,384...165,505,455
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Ppp1r3e
protein phosphatase 1, regulatory subunit 3E
involved_in
IDA IBA
GO_REF:0000033
GO_Central RGD
PMID:15752363
GO_REF:0000033, RGD:2306166
NCBI chr15:28,348,443...28,349,603
Ensembl chr15:28,347,854...28,349,603
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Ppp1r3f
protein phosphatase 1, regulatory subunit 3F
acts_upstream_of_or_within involved_in
ISO IBA
(PMID:21668450) GO_REF:0000033
RGD GO_Central
PMID:21668450
GO_REF:0000033
NCBI chr X:14,915,740...14,945,249
Ensembl chr X:14,929,323...14,945,193
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Ppp1r3g
protein phosphatase 1, regulatory subunit 3G
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr17:28,874,956...28,878,288
Ensembl chr17:28,876,482...28,877,525
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all