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ONTOLOGY REPORT - ANNOTATIONS


Term:glycogen metabolic process
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Accession:GO:0005977 term browser browse the term
Definition:The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha-(1->4) glycosidic linkage, joined together by alpha-(1->6) glycosidic linkages.
Synonyms:exact_synonym: glycogen metabolism


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glycogen metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07037995.1 IEA GO_REF:0000041 UniProt GO_REF:0000041 Ensembl chr  X:36,857,650...36,884,748 JBrowse link
G Agl amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase ISO (MGI:MGI:2157196|PMID:11785984) RGD PMID:11785984 MGI:MGI:2157196 NCBI chr 2:219,788,234...219,843,189
Ensembl chr 2:219,788,234...219,842,986
JBrowse link
G Akt1 AKT serine/threonine kinase 1 ISO MGI:MGI:2675202 (MGI:MGI:2673047|PMID:12783884) RGD PMID:12783884 MGI:MGI:2673047 NCBI chr 6:137,218,398...137,239,970
Ensembl chr 6:137,218,376...137,236,258
JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin ISO
ISS
(PMID:25538239)
MGI:MGI:104993|MGI:MGI:1858229|MGI:MGI:2182627 (MGI:MGI:3831248|PMID:18852261), (MGI:MGI:5501393|PMID:23663739), (MGI:MGI:5607479|PMID:24914213), (MGI:MGI:5616018|PMID:25416783), (MGI:MGI:5906209|PMID:21552327), (MGI:MGI:6094295|PMID:28973665)
GO_REF:0000024
RGD
UniProt
PMID:18852261, PMID:21552327, PMID:23663739, PMID:24914213, PMID:25416783, PMID:25538239, PMID:28973665 GO_REF:0000024, MGI:MGI:3831248, MGI:MGI:5501393, MGI:MGI:5607479, MGI:MGI:5616018, MGI:MGI:5906209, MGI:MGI:6094295 NCBI chr 1:5,448,958...5,571,512
Ensembl chr 1:5,448,958...5,571,512
JBrowse link
G G6pc glucose-6-phosphatase, catalytic subunit ISO MGI:MGI:2387343 (MGI:MGI:80692|PMID:8640227) RGD PMID:8640227 MGI:MGI:80692 NCBI chr10:89,286,009...89,296,213
Ensembl chr10:89,285,855...89,296,213
JBrowse link
G Gaa glucosidase, alpha, acid ISO MGI:MGI:2148550|MGI:MGI:2179961 (MGI:MGI:1195358|PMID:9384603), (MGI:MGI:1275872|PMID:9668092), (MGI:MGI:1346721|PMID:10547605), (MGI:MGI:2151980|PMID:11590121), (MGI:MGI:3618942|PMID:15169761), (MGI:MGI:3664400|PMID:12115977), (MGI:MGI:3706473|PMID:15207257) RGD PMID:9384603, PMID:9668092, PMID:10547605, PMID:11590121, PMID:12115977, PMID:15169761, PMID:15207257 MGI:MGI:1195358, MGI:MGI:1275872, MGI:MGI:1346721, MGI:MGI:2151980, MGI:MGI:3618942, MGI:MGI:3664400, MGI:MGI:3706473 NCBI chr10:108,395,873...108,412,999
Ensembl chr10:108,395,860...108,413,059
JBrowse link
G Gnmt glycine N-methyltransferase ISO MGI:MGI:3842652 (MGI:MGI:3842675|PMID:17937387) RGD PMID:17937387 MGI:MGI:3842675 NCBI chr 9:16,565,274...16,568,626
Ensembl chr 9:16,565,225...16,568,627
JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:82,097,244...82,108,238
Ensembl chr 1:82,097,247...82,108,203
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO
IEA
(PMID:8638126)
GO_REF:0000043
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:8638126 GO_REF:0000043, GO_REF:0000107 NCBI chr11:65,060,884...65,208,842
Ensembl chr11:65,066,235...65,209,268
JBrowse link
G Gys1 glycogen synthase 1 IDA RGD PMID:10572943, PMID:6244274 RGD:1642811, RGD:2304186 NCBI chr 1:101,427,195...101,447,092
Ensembl chr 1:101,427,195...101,447,092
JBrowse link
G Gys2 glycogen synthase 2 IDA RGD PMID:6096366, PMID:1733780 RGD:2304113, RGD:2304117 NCBI chr 4:176,638,632...176,679,805
Ensembl chr 4:176,638,629...176,679,815
JBrowse link
G Il6st interleukin 6 signal transducer ISO
IEA
MGI:MGI:2176787 (MGI:MGI:1335676|PMID:10205167)
GO_REF:0000107
RGD
Ensembl
PMID:10205167 GO_REF:0000107, MGI:MGI:1335676 NCBI chr 2:44,279,199...44,319,427
Ensembl chr 2:44,289,393...44,314,944
JBrowse link
G Lepr leptin receptor ISO MGI:MGI:1341085 (MGI:MGI:6094295|PMID:28973665) RGD PMID:28973665 MGI:MGI:6094295 NCBI chr 5:120,503,475...120,682,281
Ensembl chr 5:120,564,645...120,682,221
JBrowse link
G Nhlrc1 NHL repeat containing E3 ubiquitin protein ligase 1 ISO MGI:MGI:3808349|MGI:MGI:5312923 (MGI:MGI:5501393|PMID:23663739), (MGI:MGI:5607479|PMID:24914213), (MGI:MGI:5616018|PMID:25416783) RGD PMID:23663739, PMID:24914213, PMID:25416783 MGI:MGI:5501393, MGI:MGI:5607479, MGI:MGI:5616018 NCBI chr17:18,059,382...18,060,572
Ensembl chr17:18,059,382...18,060,572
JBrowse link
G Pcdh12 protocadherin 12 ISO MGI:MGI:3512625 (MGI:MGI:3804356|PMID:18477666) RGD PMID:18477666 MGI:MGI:3804356 NCBI chr18:31,415,533...31,431,108
Ensembl chr18:31,414,250...31,430,973
JBrowse link
G Phka1 phosphorylase kinase regulatory subunit alpha 1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr  X:72,377,020...72,515,385
Ensembl chr  X:72,377,021...72,515,366
JBrowse link
G Phkb phosphorylase kinase regulatory subunit beta IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr19:22,031,684...22,281,788
Ensembl chr19:22,033,228...22,281,778
JBrowse link
G Phkg1 phosphorylase kinase catalytic subunit gamma 1 TAS
IDA
RGD PMID:8419323, PMID:3953807, PMID:6281247 RGD:729579, RGD:2305955, RGD:2304176 NCBI chr12:30,450,431...30,464,314
Ensembl chr12:30,450,316...30,464,352
JBrowse link
G Phkg2 phosphorylase kinase catalytic subunit gamma 2 IDA RGD PMID:1370475, PMID:6281247 RGD:727546, RGD:2304176 NCBI chr 1:199,019,298...199,032,053
Ensembl chr 1:199,019,289...199,032,052
JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:219,439,953...219,443,570
Ensembl chr 1:219,439,953...219,443,570
JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:23,548,507...23,581,136
Ensembl chr 6:23,549,317...23,581,052
JBrowse link
G Ppp1cc protein phosphatase 1 catalytic subunit gamma IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:39,864,302...39,882,030
Ensembl chr12:39,864,295...39,882,030
JBrowse link
G Ppp1r1a protein phosphatase 1, regulatory (inhibitor) subunit 1A IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:145,146,480...145,154,131
Ensembl chr 7:145,146,481...145,154,131
JBrowse link
G Ppp1r2 protein phosphatase 1, regulatory (inhibitor) subunit 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:72,748,789...73,034,683
Ensembl chr11:73,022,063...73,034,682
JBrowse link
G Ppp1r3b protein phosphatase 1, regulatory subunit 3B IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:60,415,192...60,427,498
Ensembl chr16:60,415,229...60,427,474
JBrowse link
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C ISS
ISO
GO_REF:0000024
MGI:MGI:1341085 (MGI:MGI:5906209|PMID:21552327), (MGI:MGI:86241|PMID:9045612)
UniProt
RGD
PMID:9045612, PMID:21552327 GO_REF:0000024, MGI:MGI:5906209, MGI:MGI:86241 NCBI chr 1:255,371,830...255,376,833
Ensembl chr 1:255,371,810...255,376,833
JBrowse link
G Ppp1r3d protein phosphatase 1, regulatory subunit 3D IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:173,950,613...173,953,684
Ensembl chr 3:173,950,613...173,953,684
JBrowse link
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:33,535,986...33,537,146
Ensembl chr15:33,535,986...33,537,146
JBrowse link
G Prkag2 protein kinase AMP-activated non-catalytic subunit gamma 2 ISO (PMID:11827995), (PMID:15877279) RGD PMID:11827995, PMID:15877279 NCBI chr 4:6,559,153...6,799,888
Ensembl chr 4:6,559,545...6,799,632
JBrowse link
G Pygb glycogen phosphorylase B IDA
IEA
GO_REF:0000043 UniProt PMID:1554349 GO_REF:0000043, RGD:2304136 NCBI chr 3:146,581,063...146,629,504
Ensembl chr 3:146,582,752...146,634,535
JBrowse link
G Pygl glycogen phosphorylase L IDA
ISO
(PMID:10980448), (PMID:17705025)
(MGI:MGI:3760536|PMID:11960689)
RGD PMID:10980448, PMID:11960689, PMID:17705025, PMID:16125296, PMID:1554349, PMID:8550381, PMID:1733780, PMID:2803260, PMID:6096366 MGI:MGI:3760536, RGD:1601233, RGD:2304136, RGD:2304119, RGD:2304117, RGD:2304115, RGD:2304113 NCBI chr 6:92,597,759...92,643,734
Ensembl chr 6:92,597,706...92,643,847
JBrowse link
G Pygm glycogen phosphorylase, muscle associated IDA RGD PMID:8550381, PMID:6244274, PMID:10572943 RGD:2304119, RGD:2304186, RGD:1642811 NCBI chr 1:221,756,325...221,771,142
Ensembl chr 1:221,756,286...221,771,143
JBrowse link
G Slc37a4 solute carrier family 37 member 4 NAS
ISO
MGI:MGI:3046091 (MGI:MGI:2677663|PMID:12925567), (MGI:MGI:3695950|PMID:16891306) RGD PMID:12925567, PMID:16891306, PMID:9822626 MGI:MGI:2677663, MGI:MGI:3695950, RGD:61591 NCBI chr 8:48,716,914...48,723,024
Ensembl chr 8:48,716,939...48,723,024
JBrowse link
G Stk40 serine/threonine kinase 40 ISO
IEA
MGI:MGI:5496282 (MGI:MGI:5486391|PMID:23293024)
GO_REF:0000107
RGD
Ensembl
PMID:23293024 GO_REF:0000107, MGI:MGI:5486391 NCBI chr 5:144,112,612...144,150,653
Ensembl chr 5:144,114,012...144,150,647
JBrowse link
G Tcf7l2 transcription factor 7 like 2 ISO MGI:MGI:1926344 (MGI:MGI:5468191|PMID:23260145) RGD PMID:23260145 MGI:MGI:5468191 NCBI chr 1:276,686,911...276,730,517
Ensembl chr 1:276,659,542...276,730,514
Ensembl chr 1:276,659,542...276,730,514
JBrowse link
G Ugp2 UDP-glucose pyrophosphorylase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:106,208,174...106,249,322
Ensembl chr14:106,208,176...106,248,539
JBrowse link
glycogen biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadm acyl-CoA dehydrogenase medium chain ISO
IEA
(MGI:MGI:4412440|PMID:18459129)
GO_REF:0000107
RGD
Ensembl
PMID:18459129 GO_REF:0000107, MGI:MGI:4412440 NCBI chr 2:260,124,418...260,148,589
Ensembl chr 2:260,124,418...260,148,589
JBrowse link
G Agl amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:219,788,234...219,843,189
Ensembl chr 2:219,788,234...219,842,986
JBrowse link
G Akt1 AKT serine/threonine kinase 1 IMP PMID:10400692 UniProt PMID:10400692 RGD:8553850 NCBI chr 6:137,218,398...137,239,970
Ensembl chr 6:137,218,376...137,236,258
JBrowse link
G Akt2 AKT serine/threonine kinase 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:84,400,939...84,451,223
Ensembl chr 1:84,411,726...84,450,162
JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin ISO MGI:MGI:2145264 (MGI:MGI:6161945|PMID:28536304) RGD PMID:28536304 MGI:MGI:6161945 NCBI chr 1:5,448,958...5,571,512
Ensembl chr 1:5,448,958...5,571,512
JBrowse link
G Gbe1 1,4-alpha-glucan branching enzyme 1 IDA
IBA
IEA
ISO
PMID:21873635
GO_REF:0000002
(PMID:26199317)
InterPro
RGD
PMID:26199317, PMID:6449198, PMID:21873635 GO_REF:0000002, RGD:1642743, RGD:13792537 NCBI chr11:7,210,169...7,485,895
Ensembl chr11:7,210,209...7,485,890
JBrowse link
G Gck glucokinase IDA RGD PMID:17028192 RGD:1581879 NCBI chr14:86,149,146...86,191,589
Ensembl chr14:86,148,928...86,190,659
JBrowse link
G Gyg1 glycogenin 1 IDA
ISO
IEA
(PMID:22160680)
GO_REF:0000107
GO_REF:0000041
RGD
Ensembl
UniProt
PMID:22160680, PMID:8224611, PMID:10710493 GO_REF:0000041, GO_REF:0000107, RGD:2303736, RGD:2304070 NCBI chr 2:104,916,734...104,958,219
Ensembl chr 2:104,916,738...104,958,034
JBrowse link
G Gys1 glycogen synthase 1 IDA
IBA
ISO
IEA
PMID:21873635
(PMID:16275910)
MGI:MGI:3052742 (MGI:MGI:3052259|PMID:15282316)
GO_REF:0000041
RGD
UniProt
PMID:15282316, PMID:16275910, PMID:7671134, PMID:21873635, PMID:6449198 GO_REF:0000041, MGI:MGI:3052259, RGD:2303748, RGD:13792537, RGD:1642743 NCBI chr 1:101,427,195...101,447,092
Ensembl chr 1:101,427,195...101,447,092
JBrowse link
G Gys2 glycogen synthase 2 IDA
IBA
ISO
IEA
PMID:21873635
(PMID:1731614)
PMID:11415431
GO_REF:0000041
RGD
UniProt
PMID:1731614, PMID:15138155, PMID:21873635, PMID:1731614, PMID:11415431, PMID:6449198, PMID:114169 GO_REF:0000041, RGD:1582633, RGD:13792537, RGD:8554840, RGD:8554625, RGD:1642743, RGD:2304128 NCBI chr 4:176,638,632...176,679,805
Ensembl chr 4:176,638,629...176,679,815
JBrowse link
G Nhlrc1 NHL repeat containing E3 ubiquitin protein ligase 1 ISO MGI:MGI:1341085 (MGI:MGI:6161945|PMID:28536304) RGD PMID:28536304 MGI:MGI:6161945 NCBI chr17:18,059,382...18,060,572
Ensembl chr17:18,059,382...18,060,572
JBrowse link
G Nr1d1 nuclear receptor subfamily 1, group D, member 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
UniProtKB:O54943 (MGI:MGI:4429726|PMID:20159955)
Ensembl
UniProt
RGD
PMID:20159955 GO_REF:0000024, GO_REF:0000107, MGI:MGI:4429726 NCBI chr10:86,683,875...86,690,815
Ensembl chr10:86,683,875...86,690,815
JBrowse link
G Per2 period circadian regulator 2 ISO
ISS
UniProtKB:Q3UV55 (MGI:MGI:4429726|PMID:20159955)
GO_REF:0000024
RGD
UniProt
PMID:20159955 GO_REF:0000024, MGI:MGI:4429726 NCBI chr 9:98,555,154...98,597,362
Ensembl chr 9:98,555,169...98,597,359
JBrowse link
G Phkg1 phosphorylase kinase catalytic subunit gamma 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr12:30,450,431...30,464,314
Ensembl chr12:30,450,316...30,464,352
JBrowse link
G Phkg2 phosphorylase kinase catalytic subunit gamma 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:199,019,298...199,032,053
Ensembl chr 1:199,019,289...199,032,052
JBrowse link
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C ISO
IEA
ISS
(MGI:MGI:1353778|PMID:10683377)
GO_REF:0000104
GO_REF:0000024
RGD
UniProt
PMID:10683377 GO_REF:0000024, GO_REF:0000104, MGI:MGI:1353778 NCBI chr 1:255,371,830...255,376,833
Ensembl chr 1:255,371,810...255,376,833
JBrowse link
G Prkag3 protein kinase AMP-activated non-catalytic subunit gamma 3 ISO MGI:MGI:3055131 (MGI:MGI:3583413|PMID:15857891) RGD PMID:15857891 MGI:MGI:3583413 NCBI chr 9:81,999,368...82,008,620
Ensembl chr 9:81,999,376...82,008,620
JBrowse link
G Ptges3 prostaglandin E synthase 3 ISO MGI:MGI:3701300 (MGI:MGI:3714109|PMID:17438133) RGD PMID:17438133 MGI:MGI:3714109 NCBI chr 7:2,479,267...2,497,024
Ensembl chr 7:2,479,311...2,497,013
JBrowse link
G Ugp2 UDP-glucose pyrophosphorylase 2 ISO
IEA
(PMID:31820119)
GO_REF:0000107
RGD
Ensembl
PMID:31820119 GO_REF:0000107 NCBI chr14:106,208,174...106,249,322
Ensembl chr14:106,208,176...106,248,539
JBrowse link
glycogen catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb1 adrenoceptor beta 1 IDA RGD PMID:17911346 RGD:5129142 NCBI chr 1:277,537,585...277,538,985
Ensembl chr 1:277,537,585...277,538,985
JBrowse link
G Agl amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase IMP
IBA
IDA
PMID:21873635 RGD
GO_Central
PMID:9281456, PMID:21873635, PMID:6449198, PMID:11766064, PMID:15180797 RGD:1598779, RGD:13792537, RGD:1642743, RGD:2304191, RGD:1642741 NCBI chr 2:219,788,234...219,843,189
Ensembl chr 2:219,788,234...219,842,986
JBrowse link
G G6pc glucose-6-phosphatase, catalytic subunit ISO MGI:MGI:2387343 (MGI:MGI:1351534|PMID:10625614) RGD PMID:10625614 MGI:MGI:1351534 NCBI chr10:89,286,009...89,296,213
Ensembl chr10:89,285,855...89,296,213
JBrowse link
G Gaa glucosidase, alpha, acid IMP
ISO
IEA
IDA
MGI:MGI:2148550|MGI:MGI:2179955|MGI:MGI:2179960|MGI:MGI:2179961 (MGI:MGI:2136118|PMID:11328962), (MGI:MGI:2157196|PMID:11785984), (MGI:MGI:2179452|PMID:10838256)
(PMID:29061980), (PMID:9505277)
GO_REF:0000107
RGD
Ensembl
PMID:9505277, PMID:10838256, PMID:11328962, PMID:11785984, PMID:29061980, PMID:2193931, PMID:8710802 GO_REF:0000107, MGI:MGI:2136118, MGI:MGI:2157196, MGI:MGI:2179452, RGD:1599504, RGD:1599506 NCBI chr10:108,395,873...108,412,999
Ensembl chr10:108,395,860...108,413,059
JBrowse link
G Pfkm phosphofructokinase, muscle ISO
IEA
MGI:MGI:4356541 (MGI:MGI:4356361|PMID:19696889)
GO_REF:0000107
RGD
Ensembl
PMID:19696889 GO_REF:0000107, MGI:MGI:4356361 NCBI chr 7:139,702,066...139,722,132
Ensembl chr 7:139,685,573...139,722,132
JBrowse link
G Pygb glycogen phosphorylase B IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:16226229, PMID:21873635, PMID:11071367, PMID:10634496 RGD:1642804, RGD:13792537, RGD:2304126, RGD:1642809 NCBI chr 3:146,581,063...146,629,504
Ensembl chr 3:146,582,752...146,634,535
JBrowse link
G Pygl glycogen phosphorylase L IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:15152027, PMID:21873635, PMID:6449198, PMID:114169 RGD:1642805, RGD:13792537, RGD:1642743, RGD:2304128 NCBI chr 6:92,597,759...92,643,734
Ensembl chr 6:92,597,706...92,643,847
JBrowse link
G Pygm glycogen phosphorylase, muscle associated IDA
IBA
ISO
IEA
PMID:21873635
(MGI:MGI:3052259|PMID:15282316), (MGI:MGI:4844074|PMID:17689562)
GO_REF:0000107
RGD
Ensembl
PMID:15282316, PMID:17689562, PMID:14674711, PMID:21873635, PMID:6449198, PMID:11692172, PMID:11071367, PMID:10572943 GO_REF:0000107, MGI:MGI:3052259, MGI:MGI:4844074, RGD:1599986, RGD:13792537, RGD:1642743, RGD:1599897, RGD:2304126, RGD:1642811 NCBI chr 1:221,756,325...221,771,142
Ensembl chr 1:221,756,286...221,771,143
JBrowse link
G Stbd1 starch binding domain 1 ISO
ISS
(PMID:20810658)
GO_REF:0000024
RGD
GO_Central
PMID:20810658 GO_REF:0000024 NCBI chr14:16,976,355...16,979,760
Ensembl chr14:16,976,356...16,979,760
JBrowse link
glycophagy term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rb1cc1 RB1-inducible coiled-coil 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:13,033,918...13,097,369
Ensembl chr 5:13,033,918...13,097,341
JBrowse link
G Stbd1 starch binding domain 1 ISO
ISS
(PMID:20810658)
GO_REF:0000024
RGD
GO_Central
PMID:20810658 GO_REF:0000024 NCBI chr14:16,976,355...16,979,760
Ensembl chr14:16,976,356...16,979,760
JBrowse link
negative regulation of glycogen biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 ISO
IEA
(PMID:11289049)
GO_REF:0000107
RGD
Ensembl
PMID:11289049 GO_REF:0000107 NCBI chr 1:21,748,201...21,813,205
Ensembl chr 1:21,748,261...21,813,371
JBrowse link
G Gfpt1 glutamine fructose-6-phosphate transaminase 1 IMP RGD PMID:8349040 RGD:1625425 NCBI chr 4:118,852,046...118,901,583
Ensembl chr 4:118,852,062...118,901,591
JBrowse link
G Grb10 growth factor receptor bound protein 10 IDA PMID:11223174 BHF-UCL PMID:11223174 RGD:8553640 NCBI chr14:92,021,851...92,122,249
Ensembl chr14:92,021,851...92,117,923
JBrowse link
G Inpp5k inositol polyphosphate-5-phosphatase K ISO
IBA
(PMID:12556481)
PMID:21873635
(MGI:MGI:5294535|PMID:19250614)
RGD PMID:12556481, PMID:19250614, PMID:21873635 MGI:MGI:5294535, RGD:13792537 NCBI chr10:63,775,639...63,796,879
Ensembl chr10:63,776,378...63,795,899
JBrowse link
G Insr insulin receptor IEP RGD PMID:26300412 RGD:11529553 NCBI chr12:1,682,527...1,816,414
Ensembl chr12:1,680,957...1,816,414
JBrowse link
G Pask PAS domain containing serine/threonine kinase ISO
IBA
(PMID:16275910)
PMID:21873635
RGD PMID:16275910, PMID:21873635 RGD:13792537 NCBI chr 9:100,450,595...100,479,719
Ensembl chr 9:100,450,586...100,479,868
JBrowse link
negative regulation of glycogen catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adra1b adrenoceptor alpha 1B ISO MGI:MGI:2148638 (MGI:MGI:3027459|PMID:14581480) RGD PMID:14581480 MGI:MGI:3027459 NCBI chr10:29,392,762...29,450,644
Ensembl chr10:29,392,762...29,450,644
JBrowse link
G Ins2 insulin 2 ISO (PMID:381941) RGD PMID:381941 NCBI chr 1:215,856,967...215,858,034
Ensembl chr 1:215,856,971...215,858,034
JBrowse link
positive regulation of glycogen biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 ISO (PMID:16814735) RGD PMID:16814735 NCBI chr 6:137,218,398...137,239,970
Ensembl chr 6:137,218,376...137,236,258
JBrowse link
G Akt2 AKT serine/threonine kinase 2 ISO
IEA
(PMID:16814735)
GO_REF:0000107
RGD
Ensembl
PMID:16814735 GO_REF:0000107 NCBI chr 1:84,400,939...84,451,223
Ensembl chr 1:84,411,726...84,450,162
JBrowse link
G C1qtnf2 C1q and TNF related 2 ISO (MGI:MGI:3055459|PMID:15231994) RGD PMID:15231994 MGI:MGI:3055459 NCBI chr10:29,067,102...29,084,035
Ensembl chr10:29,067,102...29,084,035
JBrowse link
G Dyrk2 dual specificity tyrosine phosphorylation regulated kinase 2 ISO (PMID:11311121) RGD PMID:11311121 NCBI chr 7:61,785,423...61,816,775
Ensembl chr 7:61,786,309...61,798,729
JBrowse link
G Epm2aip1 EPM2A interacting protein 1 ISO
IBA
MGI:MGI:3857785 (MGI:MGI:5543825|PMID:24142699)
PMID:21873635
RGD PMID:24142699, PMID:21873635 MGI:MGI:5543825, RGD:13792537 NCBI chr 8:119,524,039...119,531,387
Ensembl chr 8:119,524,039...119,531,387
JBrowse link
G Esrrb estrogen-related receptor beta IDA
ISO
PMID:24481529
(MGI:MGI:5905261|PMID:24481529)
RGD PMID:24481529, PMID:24481529 MGI:MGI:5905261, RGD:12910990 NCBI chr 6:110,360,940...110,458,406
Ensembl chr 6:110,410,141...110,455,906
JBrowse link
G Gck glucokinase IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:8878425)
Ensembl
UniProt
RGD
PMID:8878425 GO_REF:0000024, GO_REF:0000107 NCBI chr14:86,149,146...86,191,589
Ensembl chr14:86,148,928...86,190,659
JBrowse link
G Igf1 insulin-like growth factor 1 ISO
IEA
ISS
(PMID:21076856)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:21076856 GO_REF:0000024, GO_REF:0000107 NCBI chr 7:28,412,123...28,491,815
Ensembl chr 7:28,412,198...28,486,609
JBrowse link
G Igf2 insulin-like growth factor 2 ISO
IEA
(MGI:MGI:4438697|PMID:20032056)
GO_REF:0000107
RGD
Ensembl
PMID:20032056 GO_REF:0000107, MGI:MGI:4438697 NCBI chr 1:215,828,102...215,839,081
Ensembl chr 1:215,828,102...215,846,911
JBrowse link
G Ins2 insulin 2 ISO (PMID:17925406) RGD PMID:17925406 NCBI chr 1:215,856,967...215,858,034
Ensembl chr 1:215,856,971...215,858,034
JBrowse link
G Insr insulin receptor ISO
IEA
(PMID:17925406)
GO_REF:0000107
(MGI:MGI:4438697|PMID:20032056)
RGD
Ensembl
PMID:17925406, PMID:20032056 GO_REF:0000107, MGI:MGI:4438697 NCBI chr12:1,682,527...1,816,414
Ensembl chr12:1,680,957...1,816,414
JBrowse link
G Irs1 insulin receptor substrate 1 ISO
IEA
(PMID:16814735)
GO_REF:0000107
RGD
Ensembl
PMID:16814735 GO_REF:0000107 NCBI chr 9:88,033,668...88,086,488
Ensembl chr 9:88,033,668...88,086,488
JBrowse link
G Irs2 insulin receptor substrate 2 ISO (PMID:16814735) RGD PMID:16814735 NCBI chr16:83,824,515...83,848,569
Ensembl chr16:83,824,430...83,848,684
JBrowse link
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E IMP PMID:15752363 UniProt PMID:15752363 RGD:2306166 NCBI chr15:33,535,986...33,537,146
Ensembl chr15:33,535,986...33,537,146
JBrowse link
G Ppp1r3g protein phosphatase 1, regulatory subunit 3G ISO (MGI:MGI:5000151|PMID:21471512) RGD PMID:21471512 MGI:MGI:5000151 NCBI chr17:29,566,032...29,570,294
Ensembl chr17:29,567,404...29,568,447
JBrowse link
G Pth parathyroid hormone ISO
ISS
(PMID:21076856)
GO_REF:0000024
RGD
UniProt
PMID:21076856 GO_REF:0000024 NCBI chr 1:178,215,829...178,218,761
Ensembl chr 1:178,215,829...178,218,761
JBrowse link
G Sorbs1 sorbin and SH3 domain containing 1 ISO (MGI:MGI:3690172|PMID:11001060) RGD PMID:11001060 MGI:MGI:3690172 NCBI chr 1:259,373,921...259,502,108
Ensembl chr 1:259,376,933...259,484,569
JBrowse link
positive regulation of glycogen catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adra1b adrenoceptor alpha 1B ISO MGI:MGI:2148638 (MGI:MGI:3027459|PMID:14581480) RGD PMID:14581480 MGI:MGI:3027459 NCBI chr10:29,392,762...29,450,644
Ensembl chr10:29,392,762...29,450,644
JBrowse link
G Avpr1a arginine vasopressin receptor 1A NAS PMID:1560825 UniProt PMID:1560825 RGD:1298691 NCBI chr 7:67,341,366...67,345,290
Ensembl chr 7:67,341,080...67,345,308
JBrowse link
G Hmgb1 high mobility group box 1 ISO MGI:MGI:3530901 (MGI:MGI:1339514|PMID:10391216) RGD PMID:10391216 MGI:MGI:1339514 NCBI chr12:7,082,529...7,090,246
Ensembl chr16:37,500,017...37,502,237
JBrowse link
regulation of glycogen biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 ISO (PMID:8940145) RGD PMID:8940145 NCBI chr 6:137,218,398...137,239,970
Ensembl chr 6:137,218,376...137,236,258
JBrowse link
G Inpp5k inositol polyphosphate-5-phosphatase K ISO (MGI:MGI:5294535|PMID:19250614) RGD PMID:19250614 MGI:MGI:5294535 NCBI chr10:63,775,639...63,796,879
Ensembl chr10:63,776,378...63,795,899
JBrowse link
G Mtor mechanistic target of rapamycin kinase IDA
IMP
RGD PMID:17142137, PMID:17142137 RGD:1625611, RGD:1625611 NCBI chr 5:165,263,813...165,373,967
Ensembl chr 5:165,263,800...165,373,967
JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha IDA RGD PMID:7720853 RGD:2304267 NCBI chr 1:219,439,953...219,443,570
Ensembl chr 1:219,439,953...219,443,570
JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta IDA RGD PMID:7720853 RGD:2304267 NCBI chr 6:23,548,507...23,581,136
Ensembl chr 6:23,549,317...23,581,052
JBrowse link
G Ppp1r3a protein phosphatase 1, regulatory subunit 3A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:41,171,486...41,212,116
Ensembl chr 4:41,171,486...41,212,072
JBrowse link
G Ppp1r3b protein phosphatase 1, regulatory subunit 3B IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:7720853, PMID:21873635, PMID:11716774 RGD:2304267, RGD:13792537, RGD:2306167 NCBI chr16:60,415,192...60,427,498
Ensembl chr16:60,415,229...60,427,474
JBrowse link
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:11716774, PMID:21873635 RGD:2306167, RGD:13792537 NCBI chr 1:255,371,830...255,376,833
Ensembl chr 1:255,371,810...255,376,833
JBrowse link
G Ppp1r3d protein phosphatase 1, regulatory subunit 3D IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:11716774, PMID:21873635 RGD:2306167, RGD:13792537 NCBI chr 3:173,950,613...173,953,684
Ensembl chr 3:173,950,613...173,953,684
JBrowse link
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:15752363, PMID:21873635 RGD:2306166, RGD:13792537 NCBI chr15:33,535,986...33,537,146
Ensembl chr15:33,535,986...33,537,146
JBrowse link
G Ppp1r3f protein phosphatase 1, regulatory subunit 3F ISO (PMID:21668450) RGD PMID:21668450 NCBI chr  X:15,774,091...15,784,711 JBrowse link
G Ppp1r3g protein phosphatase 1, regulatory subunit 3G IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:29,566,032...29,570,294
Ensembl chr17:29,567,404...29,568,447
JBrowse link
regulation of glycogen catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp1ca protein phosphatase 1 catalytic subunit alpha IDA RGD PMID:7720853 RGD:2304267 NCBI chr 1:219,439,953...219,443,570
Ensembl chr 1:219,439,953...219,443,570
JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta IDA RGD PMID:7720853 RGD:2304267 NCBI chr 6:23,548,507...23,581,136
Ensembl chr 6:23,549,317...23,581,052
JBrowse link
G Ppp1r3b protein phosphatase 1, regulatory subunit 3B IDA
ISO
(PMID:22225877) RGD PMID:22225877, PMID:7720853, PMID:11716774 RGD:2304267, RGD:2306167 NCBI chr16:60,415,192...60,427,498
Ensembl chr16:60,415,229...60,427,474
JBrowse link
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C IDA RGD PMID:11716774 RGD:2306167 NCBI chr 1:255,371,830...255,376,833
Ensembl chr 1:255,371,810...255,376,833
JBrowse link
G Ppp1r3d protein phosphatase 1, regulatory subunit 3D IDA RGD PMID:11716774 RGD:2306167 NCBI chr 3:173,950,613...173,953,684
Ensembl chr 3:173,950,613...173,953,684
JBrowse link
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E IDA RGD PMID:15752363 RGD:2306166 NCBI chr15:33,535,986...33,537,146
Ensembl chr15:33,535,986...33,537,146
JBrowse link
regulation of glycogen metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gcgr glucagon receptor ISO
ISS
(MGI:MGI:2449992|PMID:12552113)
GO_REF:0000024
RGD
UniProt
PMID:12552113 GO_REF:0000024, MGI:MGI:2449992 NCBI chr10:109,707,863...109,716,253
Ensembl chr10:109,707,962...109,716,128
JBrowse link
G Khk ketohexokinase ISO
IBA
MGI:MGI:4398729 (MGI:MGI:5315051|PMID:22371574)
PMID:21873635
RGD PMID:22371574, PMID:21873635 MGI:MGI:5315051, RGD:13792537 NCBI chr 6:26,810,577...26,821,013
Ensembl chr 6:26,810,579...26,820,959
JBrowse link
G Phlda2 pleckstrin homology-like domain, family A, member 2 ISO (MGI:MGI:4420513|PMID:19884348) RGD PMID:19884348 MGI:MGI:4420513 NCBI chr 1:216,701,345...216,704,479
Ensembl chr 1:216,702,319...216,703,534
JBrowse link
G Pomc proopiomelanocortin ISO
IEA
MGI:MGI:2687084 (MGI:MGI:5302462|PMID:21184805)
GO_REF:0000107
RGD
Ensembl
PMID:21184805 GO_REF:0000107, MGI:MGI:5302462 NCBI chr 6:28,382,937...28,388,771
Ensembl chr 6:28,382,962...28,388,967
JBrowse link
G Rubcnl rubicon like autophagy enhancer ISO (MGI:MGI:6282647|PMID:30704899) RGD PMID:30704899 MGI:MGI:6282647 NCBI chr15:57,065,512...57,109,197
Ensembl chr15:57,065,428...57,102,599
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20017
    metabolic process 12256
      oxidation-reduction process 1146
        energy derivation by oxidation of organic compounds 265
          energy reserve metabolic process 87
            glycogen metabolic process 78
              glycogen biosynthetic process + 45
              glycogen catabolic process + 20
              negative regulation of glycogen metabolic process + 8
              positive regulation of glycogen metabolic process + 20
              regulation of glycogen metabolic process + 38
Path 2
Term Annotations click to browse term
  biological_process 20017
    metabolic process 12256
      primary metabolic process 10901
        carbohydrate metabolic process 630
          cellular carbohydrate metabolic process 316
            cellular polysaccharide metabolic process 106
              cellular glucan metabolic process 78
                glycogen metabolic process 78
                  glycogen biosynthetic process + 45
                  glycogen catabolic process + 20
                  negative regulation of glycogen metabolic process + 8
                  positive regulation of glycogen metabolic process + 20
                  regulation of glycogen metabolic process + 38
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.