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ONTOLOGY REPORT - ANNOTATIONS


Term:clathrin-coated pit
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Accession:GO:0005905 term browser browse the term
Definition:A part of the endomembrane system in the form of an invagination of a membrane upon which a clathrin coat forms, and that can be converted by vesicle budding into a clathrin-coated vesicle. Coated pits form on the plasma membrane, where they are involved in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane, in the trans-Golgi network, and on some endosomes.
Synonyms:exact_synonym: coated pit
 xref: NIF_Subcellular:sao1969557946



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clathrin-coated pit term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AAK1 AP2 associated kinase 1 located_in IEA UniProt GO_REF:0000043 GO_REF:0000044 NCBI chr10:68,181,584...68,336,266
Ensembl chr10:68,134,902...68,335,988
JBrowse link
G ACKR3 atypical chemokine receptor 3 located_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr25:47,327,921...47,339,632
Ensembl chr25:47,327,963...47,339,622
JBrowse link
G ADCY8 adenylate cyclase 8 located_in ISO PMID:19158400 UniProt PMID:19158400 RGD:13800545 NCBI chr13:27,723,530...27,937,821
Ensembl chr13:27,723,530...27,937,734
JBrowse link
G AMN amnion associated transmembrane protein located_in IEA UniProt GO_REF:0000043 NCBI chr 8:70,800,435...70,807,835 JBrowse link
G AP1S1 adaptor related protein complex 1 subunit sigma 1 located_in IEA UniProt GO_REF:0000044 NCBI chr 6:8,705,294...8,711,285
Ensembl chr 6:8,705,647...8,711,190
JBrowse link
G AP1S2 adaptor related protein complex 1 subunit sigma 2 located_in IEA UniProt GO_REF:0000044 NCBI chr  X:12,075,797...12,105,911
Ensembl chr  X:12,076,724...12,103,654
JBrowse link
G AP2A1 adaptor related protein complex 2 subunit alpha 1 located_in IEA UniProt GO_REF:0000043 NCBI chr 1:106,752,326...106,784,803
Ensembl chr 1:106,751,800...106,784,663
JBrowse link
G AP2A2 adaptor related protein complex 2 subunit alpha 2 located_in IEA UniProt GO_REF:0000043 NCBI chr18:45,269,962...45,358,020
Ensembl chr18:45,253,772...45,358,018
JBrowse link
G AP2M1 adaptor related protein complex 2 subunit mu 1 located_in IEA UniProt
Ensembl
GO_REF:0000043 GO_REF:0000107 NCBI chr34:17,071,199...17,080,445
Ensembl chr34:17,071,235...17,080,445
JBrowse link
G AP2S1 adaptor related protein complex 2 subunit sigma 1 located_in IEA UniProt GO_REF:0000043 NCBI chr 1:109,094,098...109,105,233
Ensembl chr 1:109,082,221...109,105,230
JBrowse link
G APP amyloid beta precursor protein located_in IEA UniProt GO_REF:0000043 GO_REF:0000044 NCBI chr31:21,351,207...21,614,466
Ensembl chr31:21,351,207...21,614,337
JBrowse link
G ARRB1 arrestin beta 1 located_in IEA UniProt GO_REF:0000043 GO_REF:0000044 NCBI chr21:23,261,020...23,304,448
Ensembl chr21:23,235,711...23,297,786
JBrowse link
G ATAT1 alpha tubulin acetyltransferase 1 located_in IEA UniProt GO_REF:0000043 GO_REF:0000044 NCBI chr12:441,847...456,349
Ensembl chr12:441,895...456,152
JBrowse link
G BCL2L1 BCL2 like 1 located_in ISO PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr24:21,145,214...21,209,425
Ensembl chr24:21,145,215...21,196,355
JBrowse link
G BMPR2 bone morphogenetic protein receptor type 2 located_in
is_active_in
IEA
ISO
(PMID:16923969) Ensembl
MGI
PMID:16923969 GO_REF:0000107 NCBI chr37:11,342,292...11,540,199
Ensembl chr37:11,342,384...11,533,024
JBrowse link
G CCDC32 coiled-coil domain containing 32 located_in
part_of
IEA
ISO
(PMID:33859415) Ensembl
UniProt
PMID:33859415 GO_REF:0000107 NCBI chr30:7,719,932...7,730,642
Ensembl chr30:7,720,519...7,728,663
JBrowse link
G CDHR5 cadherin related family member 5 ISO RGD PMID:10801787 RGD:633361
G CLTA clathrin light chain A located_in ISO
IEA
RGD
UniProt
PMID:14985443 GO_REF:0000043 RGD:2301373 NCBI chr11:52,636,328...52,681,258
Ensembl chr11:52,615,039...52,681,270
JBrowse link
G CLTB clathrin light chain B located_in IEA UniProt GO_REF:0000043 NCBI chr 4:36,915,106...36,935,565
Ensembl chr 4:36,791,891...36,935,278
JBrowse link
G CLTC clathrin heavy chain located_in IEA UniProt GO_REF:0000043 NCBI chr 9:34,116,344...34,183,023
Ensembl chr 9:34,116,634...34,182,719
JBrowse link
G CLTCL1 clathrin heavy chain like 1 located_in IEA UniProt
Ensembl
GO_REF:0000043 GO_REF:0000107 NCBI chr26:29,907,235...30,002,136
Ensembl chr26:29,906,278...30,002,128
JBrowse link
G CTTN cortactin located_in ISO PMID:19995918 UniProt PMID:19995918 RGD:10047197 NCBI chr18:47,932,367...47,960,732
Ensembl chr18:47,916,632...47,960,674
JBrowse link
G CUBN cubilin located_in IEA UniProt
Ensembl
GO_REF:0000043 GO_REF:0000107 NCBI chr 2:19,784,125...20,041,840
Ensembl chr 2:19,784,198...20,041,839
JBrowse link
G DAB2 DAB adaptor protein 2 located_in
is_active_in
IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr 4:69,625,874...69,648,349
Ensembl chr 4:69,625,527...69,648,321
JBrowse link
G DGKD diacylglycerol kinase delta located_in IEA Ensembl GO_REF:0000107 NCBI chr25:44,851,827...44,961,352
Ensembl chr25:44,851,493...44,961,364
JBrowse link
G DNM1 dynamin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:55,252,802...55,298,244
Ensembl chr 9:55,252,347...55,298,244
JBrowse link
G DNM1L dynamin 1 like located_in IEA UniProt GO_REF:0000043 GO_REF:0000044 NCBI chr27:16,161,855...16,211,983
Ensembl chr27:16,163,357...16,211,957
JBrowse link
G DNM2 dynamin 2 located_in ISO (PMID:26437238)
PMID:19995918
RGD
MGI
UniProt
PMID:9725914 PMID:19995918 PMID:26437238 RGD:10047197 RGD:9685132 NCBI chr20:50,398,866...50,487,303
Ensembl chr20:50,398,864...50,487,241
JBrowse link
G EPN3 epsin 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:26,454,340...26,465,236
Ensembl chr 9:26,457,776...26,463,637
JBrowse link
G EPS15 epidermal growth factor receptor pathway substrate 15 located_in ISO (PMID:20427320) MGI PMID:20427320 NCBI chr15:9,834,285...9,895,755
Ensembl chr15:9,787,260...9,893,540
JBrowse link
G FCHO1 FCH and mu domain containing endocytic adaptor 1 located_in
is_active_in
IEA
IBA
UniProt
GO_Central
Ensembl
GO_REF:0000033 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 NCBI chr20:45,106,982...45,131,173
Ensembl chr20:45,106,983...45,134,325
JBrowse link
G FCHO2 FCH and mu domain containing endocytic adaptor 2 located_in
is_active_in
IEA
IBA
UniProt
GO_Central
Ensembl
GO_REF:0000033 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 NCBI chr 2:55,905,497...56,011,395
Ensembl chr 2:55,905,520...56,009,131
JBrowse link
G FCHSD2 FCH and double SH3 domains 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr21:25,082,864...25,399,754
Ensembl chr21:25,072,161...25,397,717
JBrowse link
G GAS7 growth arrest specific 7 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 5:34,334,477...34,457,189
Ensembl chr 5:34,339,098...34,457,164
JBrowse link
G GLIPR2 GLI pathogenesis related 2 located_in IEA UniProt GO_REF:0000043 NCBI chr11:52,622,460...52,634,602
Ensembl chr11:52,615,039...52,681,270
JBrowse link
G HIP1R huntingtin interacting protein 1 related located_in IEA Ensembl GO_REF:0000107 NCBI chr26:6,623,583...6,639,107
Ensembl chr26:6,624,791...6,637,659
JBrowse link
G HSPD1 heat shock protein family D (Hsp60) member 1 located_in ISO (PMID:11807771) BHF-UCL PMID:11807771 NCBI chr37:7,010,421...7,025,912 JBrowse link
G INPP5F inositol polyphosphate-5-phosphatase F located_in IEA Ensembl GO_REF:0000107 NCBI chr28:29,878,489...29,945,598
Ensembl chr28:29,858,658...29,944,490
JBrowse link
G ITSN1 intersectin 1 located_in ISO (PMID:26437238)
(PMID:20946875), (PMID:29887380)
RGD
MGI
UniProt
PMID:19258322 PMID:20946875 PMID:26437238 PMID:29887380 RGD:13461864 NCBI chr31:29,144,754...29,360,134 JBrowse link
G LDLR low density lipoprotein receptor located_in IEA Ensembl GO_REF:0000107 NCBI chr20:50,115,175...50,152,443
Ensembl chr20:50,048,736...50,152,355
JBrowse link
G LOC119868747 AP-1 complex subunit sigma-2-like located_in IEA UniProt GO_REF:0000044
G LOC119868890 dynamin-1-like protein located_in IEA UniProt GO_REF:0000043 GO_REF:0000044
G LOC477072 serotransferrin located_in ISO (PMID:12857860)
(PMID:20427320)
UniProt
MGI
PMID:12857860 PMID:20427320 NCBI chr23:30,658,250...30,683,816
Ensembl chr23:30,595,704...30,683,845
JBrowse link
G LOC609464 alpha-tubulin N-acetyltransferase 1-like located_in IEA UniProt GO_REF:0000043 GO_REF:0000044 NCBI chr26:35,330,499...35,334,066 JBrowse link
G LRP10 LDL receptor related protein 10 located_in IEA UniProt GO_REF:0000043 NCBI chr 8:3,208,710...3,214,888
Ensembl chr 8:3,208,269...3,382,311
JBrowse link
G LRP2 LDL receptor related protein 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr36:13,910,450...14,107,081
Ensembl chr36:13,911,865...14,107,546
JBrowse link
G LRP3 LDL receptor related protein 3 located_in IEA UniProt GO_REF:0000043 NCBI chr 1:118,924,195...118,934,687
Ensembl chr 1:118,926,861...118,929,769
JBrowse link
G MYO6 myosin VI NOT|located_in ISO (PMID:12857860) UniProt PMID:12857860 NCBI chr12:37,359,200...37,502,342
Ensembl chr12:37,413,570...37,500,724
JBrowse link
G NECAP1 NECAP endocytosis associated 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr27:37,460,545...37,472,512
Ensembl chr27:37,460,607...37,507,052
JBrowse link
G NFU1 NFU1 iron-sulfur cluster scaffold located_in IEA UniProt GO_REF:0000043 GO_REF:0000044 NCBI chr10:68,134,865...68,161,841
Ensembl chr10:68,134,902...68,335,988
JBrowse link
G NUMB NUMB endocytic adaptor protein located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:46,620,444...46,781,564
Ensembl chr 8:46,607,556...46,782,175
JBrowse link
G PICALM phosphatidylinositol binding clathrin assembly protein located_in
is_active_in
IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr21:13,437,819...13,540,167
Ensembl chr21:13,437,925...13,539,616
JBrowse link
G RAB35 RAB35, member RAS oncogene family located_in IEA Ensembl GO_REF:0000107 NCBI chr26:16,061,872...16,078,489
Ensembl chr26:16,063,043...16,078,481
JBrowse link
G REM2 RRAD and GEM like GTPase 2 located_in IEA UniProt GO_REF:0000043 NCBI chr 8:3,215,023...3,223,470
Ensembl chr 8:3,208,269...3,382,311
JBrowse link
G REPS1 RALBP1 associated Eps domain containing 1 located_in ISO (PMID:20946875) UniProt PMID:20946875 NCBI chr 1:31,141,321...31,200,200
Ensembl chr 1:31,141,258...31,181,542
JBrowse link
G SELE selectin E located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:28,888,503...28,898,787
Ensembl chr 7:28,888,197...28,898,786
JBrowse link
G SGIP1 SH3GL interacting endocytic adaptor 1 located_in IEA UniProt
Ensembl
GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 NCBI chr 5:43,741,507...43,944,289
Ensembl chr 5:43,746,506...43,943,414
JBrowse link
G SH3BP4 SH3 domain binding protein 4 located_in IEA UniProt GO_REF:0000043 GO_REF:0000044 NCBI chr25:46,049,631...46,133,065
Ensembl chr25:46,049,475...46,155,519
JBrowse link
G SLC2A4 solute carrier family 2 member 4 ISO RGD PMID:1881917 RGD:2306204 NCBI chr 5:32,238,095...32,244,022
Ensembl chr 5:32,238,095...32,244,021
JBrowse link
G SNAP91 synaptosome associated protein 91 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr12:43,919,925...44,058,315
Ensembl chr12:43,919,925...44,058,616
JBrowse link
G SNX9 sorting nexin 9 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:47,346,214...47,457,417
Ensembl chr 1:47,343,668...47,455,937
JBrowse link
G SORT1 sortilin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:42,454,091...42,521,251
Ensembl chr 6:42,453,942...42,516,740
JBrowse link
G SPHK1 sphingosine kinase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:4,311,698...4,314,773
Ensembl chr 9:4,311,683...4,314,483
JBrowse link
G STON1 stonin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:50,421,635...50,470,302
Ensembl chr10:50,436,715...50,467,878
JBrowse link
G TFAP2A transcription factor AP-2 alpha located_in ISO (PMID:26437238) MGI PMID:26437238 NCBI chr35:10,157,043...10,180,484
Ensembl chr35:10,157,882...10,180,270
JBrowse link
G TFRC transferrin receptor located_in IEA Ensembl GO_REF:0000107 NCBI chr33:29,206,024...29,237,221
Ensembl chr33:29,208,609...29,238,242
JBrowse link
G TNK2 tyrosine kinase non receptor 2 located_in ISO (PMID:21169560) UniProt PMID:21169560 NCBI chr33:29,153,636...29,177,568
Ensembl chr33:29,152,851...29,179,718
JBrowse link
G WDFY1 WD repeat and FYVE domain containing 1 located_in IEA UniProt GO_REF:0000044 NCBI chr37:29,544,956...29,658,544
Ensembl chr37:29,444,082...29,677,312
JBrowse link
AP-2 adaptor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP2A1 adaptor related protein complex 2 subunit alpha 1 part_of IEA
IBA
Ensembl
GO_Central
UniProt
InterPro
GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr 1:106,752,326...106,784,803
Ensembl chr 1:106,751,800...106,784,663
JBrowse link
G AP2A2 adaptor related protein complex 2 subunit alpha 2 part_of IEA
IBA
InterPro
GO_Central
Ensembl
UniProt
GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr18:45,269,962...45,358,020
Ensembl chr18:45,253,772...45,358,018
JBrowse link
G AP2B1 adaptor related protein complex 2 subunit beta 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 9:37,946,761...38,078,074
Ensembl chr 9:37,946,788...38,078,041
JBrowse link
G AP2M1 adaptor related protein complex 2 subunit mu 1 part_of IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr34:17,071,199...17,080,445
Ensembl chr34:17,071,235...17,080,445
JBrowse link
G AP2S1 adaptor related protein complex 2 subunit sigma 1 part_of ISO
IEA
RGD
InterPro
PMID:7593184 GO_REF:0000002 RGD:2306270 NCBI chr 1:109,094,098...109,105,233
Ensembl chr 1:109,082,221...109,105,230
JBrowse link
G BTBD8 BTB domain containing 8 located_in ISO PMID:29262337 UniProt PMID:29262337 RGD:13601995 NCBI chr 6:56,756,682...56,849,849
Ensembl chr 6:56,698,320...56,900,173
JBrowse link
G EPS15 epidermal growth factor receptor pathway substrate 15 part_of ISO (PMID:17626015) UniProt PMID:17626015 NCBI chr15:9,834,285...9,895,755
Ensembl chr15:9,787,260...9,893,540
JBrowse link
G SGIP1 SH3GL interacting endocytic adaptor 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 5:43,741,507...43,944,289
Ensembl chr 5:43,746,506...43,943,414
JBrowse link
G SLC18A3 solute carrier family 18 member A3 part_of ISO
IBA
RGD
GO_Central
PMID:14724281 GO_REF:0000033 RGD:2317430 NCBI chr28:1,476,873...1,478,538
Ensembl chr28:1,476,774...1,478,505
JBrowse link
G STON1 stonin 1 part_of IBA GO_Central GO_REF:0000033 NCBI chr10:50,421,635...50,470,302
Ensembl chr10:50,436,715...50,467,878
JBrowse link
G STON2 stonin 2 part_of IBA GO_Central GO_REF:0000033 NCBI chr 8:53,591,194...53,725,710
Ensembl chr 8:53,597,780...53,725,688
JBrowse link
G TBC1D5 TBC1 domain family member 5 part_of
located_in
IEA
ISO
(PMID:24603492) Ensembl
UniProt
PMID:24603492 GO_REF:0000107 NCBI chr23:25,206,825...25,758,026
Ensembl chr23:25,254,448...25,757,385
JBrowse link
clathrin coat of coated pit term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLTA clathrin light chain A part_of IEA InterPro GO_REF:0000002 NCBI chr11:52,636,328...52,681,258
Ensembl chr11:52,615,039...52,681,270
JBrowse link
G CLTB clathrin light chain B part_of IEA InterPro GO_REF:0000002 NCBI chr 4:36,915,106...36,935,565
Ensembl chr 4:36,791,891...36,935,278
JBrowse link
G CLTC clathrin heavy chain part_of IEA InterPro GO_REF:0000002 NCBI chr 9:34,116,344...34,183,023
Ensembl chr 9:34,116,634...34,182,719
JBrowse link
G CLTCL1 clathrin heavy chain like 1 part_of IEA InterPro GO_REF:0000002 NCBI chr26:29,907,235...30,002,136
Ensembl chr26:29,906,278...30,002,128
JBrowse link
G DAB2 DAB adaptor protein 2 part_of ISO (PMID:11247302) UniProt PMID:11247302 NCBI chr 4:69,625,874...69,648,349
Ensembl chr 4:69,625,527...69,648,321
JBrowse link
G EPS15 epidermal growth factor receptor pathway substrate 15 part_of IBA GO_Central GO_REF:0000033 NCBI chr15:9,834,285...9,895,755
Ensembl chr15:9,787,260...9,893,540
JBrowse link
G EPS15L1 epidermal growth factor receptor pathway substrate 15 like 1 part_of IBA GO_Central GO_REF:0000033 NCBI chr20:46,064,709...46,161,535
Ensembl chr20:46,064,775...46,161,535
JBrowse link
G GLIPR2 GLI pathogenesis related 2 part_of IEA InterPro GO_REF:0000002 NCBI chr11:52,622,460...52,634,602
Ensembl chr11:52,615,039...52,681,270
JBrowse link
G PICALM phosphatidylinositol binding clathrin assembly protein part_of IEA Ensembl GO_REF:0000107 NCBI chr21:13,437,819...13,540,167
Ensembl chr21:13,437,925...13,539,616
JBrowse link
G SYNJ1 synaptojanin 1 part_of ISO PMID:9428629 ParkinsonsUK-UCL PMID:9428629 RGD:11059574 NCBI chr31:27,308,169...27,399,226
Ensembl chr31:27,308,169...27,399,197
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 23076
    cellular anatomical structure 22786
      membrane 9396
        clathrin-coated pit 75
          clathrin coat of coated pit + 21
paths to the root