ONTOLOGY REPORT - ANNOTATIONS
Term: clathrin-coated pit
Accession: GO:0005905
browse the term
Definition: A part of the endomembrane system in the form of an invagination of a membrane upon which a clathrin coat forms, and that can be converted by vesicle budding into a clathrin-coated vesicle. Coated pits form on the plasma membrane, where they are involved in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane, in the trans-Golgi network, and on some endosomes.
Synonyms: exact_synonym: coated pit
xref: NIF_Subcellular:sao1969557946
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AAK1
AP2 associated kinase 1
located_in
IEA
UniProt
GO_REF:0000043 GO_REF:0000044
NCBI chr10:68,181,584...68,336,266
Ensembl chr10:68,134,902...68,335,988
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ACKR3
atypical chemokine receptor 3
located_in
IEA ISS
Ensembl UniProt
GO_REF:0000024 GO_REF:0000107
NCBI chr25:47,327,921...47,339,632
Ensembl chr25:47,327,963...47,339,622
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ADCY8
adenylate cyclase 8
located_in
ISO
PMID:19158400
UniProt
PMID:19158400
RGD:13800545
NCBI chr13:27,723,530...27,937,821
Ensembl chr13:27,723,530...27,937,734
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AMN
amnion associated transmembrane protein
located_in
IEA
UniProt
GO_REF:0000043
NCBI chr 8:70,800,435...70,807,835
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AP1S1
adaptor related protein complex 1 subunit sigma 1
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr 6:8,705,294...8,711,285
Ensembl chr 6:8,705,647...8,711,190
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AP1S2
adaptor related protein complex 1 subunit sigma 2
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr X:12,075,797...12,105,911
Ensembl chr X:12,076,724...12,103,654
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AP2A1
adaptor related protein complex 2 subunit alpha 1
located_in
IEA
UniProt
GO_REF:0000043
NCBI chr 1:106,752,326...106,784,803
Ensembl chr 1:106,751,800...106,784,663
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AP2A2
adaptor related protein complex 2 subunit alpha 2
located_in
IEA
UniProt
GO_REF:0000043
NCBI chr18:45,269,962...45,358,020
Ensembl chr18:45,253,772...45,358,018
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AP2M1
adaptor related protein complex 2 subunit mu 1
located_in
IEA
UniProt Ensembl
GO_REF:0000043 GO_REF:0000107
NCBI chr34:17,071,199...17,080,445
Ensembl chr34:17,071,235...17,080,445
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AP2S1
adaptor related protein complex 2 subunit sigma 1
located_in
IEA
UniProt
GO_REF:0000043
NCBI chr 1:109,094,098...109,105,233
Ensembl chr 1:109,082,221...109,105,230
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APP
amyloid beta precursor protein
located_in
IEA
UniProt
GO_REF:0000043 GO_REF:0000044
NCBI chr31:21,351,207...21,614,466
Ensembl chr31:21,351,207...21,614,337
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ARRB1
arrestin beta 1
located_in
IEA
UniProt
GO_REF:0000043 GO_REF:0000044
NCBI chr21:23,261,020...23,304,448
Ensembl chr21:23,235,711...23,297,786
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ATAT1
alpha tubulin acetyltransferase 1
located_in
IEA
UniProt
GO_REF:0000043 GO_REF:0000044
NCBI chr12:441,847...456,349
Ensembl chr12:441,895...456,152
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BCL2L1
BCL2 like 1
located_in
ISO
PMID:23792689
CAFA
PMID:23792689
RGD:12793033
NCBI chr24:21,145,214...21,209,425
Ensembl chr24:21,145,215...21,196,355
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BMPR2
bone morphogenetic protein receptor type 2
located_in is_active_in
IEA ISO
(PMID:16923969)
Ensembl MGI
PMID:16923969
GO_REF:0000107
NCBI chr37:11,342,292...11,540,199
Ensembl chr37:11,342,384...11,533,024
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CCDC32
coiled-coil domain containing 32
located_in part_of
IEA ISO
(PMID:33859415)
Ensembl UniProt
PMID:33859415
GO_REF:0000107
NCBI chr30:7,719,932...7,730,642
Ensembl chr30:7,720,519...7,728,663
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CDHR5
cadherin related family member 5
ISO
RGD
PMID:10801787
RGD:633361
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CLTA
clathrin light chain A
located_in
ISO IEA
RGD UniProt
PMID:14985443
GO_REF:0000043 RGD:2301373
NCBI chr11:52,636,328...52,681,258
Ensembl chr11:52,615,039...52,681,270
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CLTB
clathrin light chain B
located_in
IEA
UniProt
GO_REF:0000043
NCBI chr 4:36,915,106...36,935,565
Ensembl chr 4:36,791,891...36,935,278
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CLTC
clathrin heavy chain
located_in
IEA
UniProt
GO_REF:0000043
NCBI chr 9:34,116,344...34,183,023
Ensembl chr 9:34,116,634...34,182,719
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CLTCL1
clathrin heavy chain like 1
located_in
IEA
UniProt Ensembl
GO_REF:0000043 GO_REF:0000107
NCBI chr26:29,907,235...30,002,136
Ensembl chr26:29,906,278...30,002,128
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CTTN
cortactin
located_in
ISO
PMID:19995918
UniProt
PMID:19995918
RGD:10047197
NCBI chr18:47,932,367...47,960,732
Ensembl chr18:47,916,632...47,960,674
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CUBN
cubilin
located_in
IEA
UniProt Ensembl
GO_REF:0000043 GO_REF:0000107
NCBI chr 2:19,784,125...20,041,840
Ensembl chr 2:19,784,198...20,041,839
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DAB2
DAB adaptor protein 2
located_in is_active_in
IEA IBA
Ensembl GO_Central
GO_REF:0000033 GO_REF:0000107
NCBI chr 4:69,625,874...69,648,349
Ensembl chr 4:69,625,527...69,648,321
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DGKD
diacylglycerol kinase delta
located_in
IEA
Ensembl
GO_REF:0000107
NCBI chr25:44,851,827...44,961,352
Ensembl chr25:44,851,493...44,961,364
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DNM1
dynamin 1
located_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:55,252,802...55,298,244
Ensembl chr 9:55,252,347...55,298,244
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DNM1L
dynamin 1 like
located_in
IEA
UniProt
GO_REF:0000043 GO_REF:0000044
NCBI chr27:16,161,855...16,211,983
Ensembl chr27:16,163,357...16,211,957
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DNM2
dynamin 2
located_in
ISO
(PMID:26437238) PMID:19995918
RGD MGI UniProt
PMID:9725914 PMID:19995918 PMID:26437238
RGD:10047197 RGD:9685132
NCBI chr20:50,398,866...50,487,303
Ensembl chr20:50,398,864...50,487,241
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EPN3
epsin 3
located_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:26,454,340...26,465,236
Ensembl chr 9:26,457,776...26,463,637
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EPS15
epidermal growth factor receptor pathway substrate 15
located_in
ISO
(PMID:20427320)
MGI
PMID:20427320
NCBI chr15:9,834,285...9,895,755
Ensembl chr15:9,787,260...9,893,540
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FCHO1
FCH and mu domain containing endocytic adaptor 1
located_in is_active_in
IEA IBA
UniProt GO_Central Ensembl
GO_REF:0000033 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107
NCBI chr20:45,106,982...45,131,173
Ensembl chr20:45,106,983...45,134,325
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FCHO2
FCH and mu domain containing endocytic adaptor 2
located_in is_active_in
IEA IBA
UniProt GO_Central Ensembl
GO_REF:0000033 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107
NCBI chr 2:55,905,497...56,011,395
Ensembl chr 2:55,905,520...56,009,131
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FCHSD2
FCH and double SH3 domains 2
located_in
IEA
Ensembl
GO_REF:0000107
NCBI chr21:25,082,864...25,399,754
Ensembl chr21:25,072,161...25,397,717
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GAS7
growth arrest specific 7
is_active_in
IBA
GO_Central
GO_REF:0000033
NCBI chr 5:34,334,477...34,457,189
Ensembl chr 5:34,339,098...34,457,164
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GLIPR2
GLI pathogenesis related 2
located_in
IEA
UniProt
GO_REF:0000043
NCBI chr11:52,622,460...52,634,602
Ensembl chr11:52,615,039...52,681,270
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HIP1R
huntingtin interacting protein 1 related
located_in
IEA
Ensembl
GO_REF:0000107
NCBI chr26:6,623,583...6,639,107
Ensembl chr26:6,624,791...6,637,659
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HSPD1
heat shock protein family D (Hsp60) member 1
located_in
ISO
(PMID:11807771)
BHF-UCL
PMID:11807771
NCBI chr37:7,010,421...7,025,912
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INPP5F
inositol polyphosphate-5-phosphatase F
located_in
IEA
Ensembl
GO_REF:0000107
NCBI chr28:29,878,489...29,945,598
Ensembl chr28:29,858,658...29,944,490
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ITSN1
intersectin 1
located_in
ISO
(PMID:26437238) (PMID:20946875), (PMID:29887380)
RGD MGI UniProt
PMID:19258322 PMID:20946875 PMID:26437238 PMID:29887380
RGD:13461864
NCBI chr31:29,144,754...29,360,134
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LDLR
low density lipoprotein receptor
located_in
IEA
Ensembl
GO_REF:0000107
NCBI chr20:50,115,175...50,152,443
Ensembl chr20:50,048,736...50,152,355
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LOC119868747
AP-1 complex subunit sigma-2-like
located_in
IEA
UniProt
GO_REF:0000044
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LOC119868890
dynamin-1-like protein
located_in
IEA
UniProt
GO_REF:0000043 GO_REF:0000044
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LOC477072
serotransferrin
located_in
ISO
(PMID:12857860) (PMID:20427320)
UniProt MGI
PMID:12857860 PMID:20427320
NCBI chr23:30,658,250...30,683,816
Ensembl chr23:30,595,704...30,683,845
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LOC609464
alpha-tubulin N-acetyltransferase 1-like
located_in
IEA
UniProt
GO_REF:0000043 GO_REF:0000044
NCBI chr26:35,330,499...35,334,066
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LRP10
LDL receptor related protein 10
located_in
IEA
UniProt
GO_REF:0000043
NCBI chr 8:3,208,710...3,214,888
Ensembl chr 8:3,208,269...3,382,311
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LRP2
LDL receptor related protein 2
located_in
IEA
Ensembl
GO_REF:0000107
NCBI chr36:13,910,450...14,107,081
Ensembl chr36:13,911,865...14,107,546
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LRP3
LDL receptor related protein 3
located_in
IEA
UniProt
GO_REF:0000043
NCBI chr 1:118,924,195...118,934,687
Ensembl chr 1:118,926,861...118,929,769
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MYO6
myosin VI
NOT|located_in
ISO
(PMID:12857860)
UniProt
PMID:12857860
NCBI chr12:37,359,200...37,502,342
Ensembl chr12:37,413,570...37,500,724
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NECAP1
NECAP endocytosis associated 1
located_in
IEA
Ensembl
GO_REF:0000107
NCBI chr27:37,460,545...37,472,512
Ensembl chr27:37,460,607...37,507,052
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NFU1
NFU1 iron-sulfur cluster scaffold
located_in
IEA
UniProt
GO_REF:0000043 GO_REF:0000044
NCBI chr10:68,134,865...68,161,841
Ensembl chr10:68,134,902...68,335,988
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NUMB
NUMB endocytic adaptor protein
located_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:46,620,444...46,781,564
Ensembl chr 8:46,607,556...46,782,175
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PICALM
phosphatidylinositol binding clathrin assembly protein
located_in is_active_in
IEA IBA
Ensembl GO_Central
GO_REF:0000033 GO_REF:0000107
NCBI chr21:13,437,819...13,540,167
Ensembl chr21:13,437,925...13,539,616
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RAB35
RAB35, member RAS oncogene family
located_in
IEA
Ensembl
GO_REF:0000107
NCBI chr26:16,061,872...16,078,489
Ensembl chr26:16,063,043...16,078,481
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REM2
RRAD and GEM like GTPase 2
located_in
IEA
UniProt
GO_REF:0000043
NCBI chr 8:3,215,023...3,223,470
Ensembl chr 8:3,208,269...3,382,311
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REPS1
RALBP1 associated Eps domain containing 1
located_in
ISO
(PMID:20946875)
UniProt
PMID:20946875
NCBI chr 1:31,141,321...31,200,200
Ensembl chr 1:31,141,258...31,181,542
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SELE
selectin E
located_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:28,888,503...28,898,787
Ensembl chr 7:28,888,197...28,898,786
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SGIP1
SH3GL interacting endocytic adaptor 1
located_in
IEA
UniProt Ensembl
GO_REF:0000043 GO_REF:0000044 GO_REF:0000107
NCBI chr 5:43,741,507...43,944,289
Ensembl chr 5:43,746,506...43,943,414
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SH3BP4
SH3 domain binding protein 4
located_in
IEA
UniProt
GO_REF:0000043 GO_REF:0000044
NCBI chr25:46,049,631...46,133,065
Ensembl chr25:46,049,475...46,155,519
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SLC2A4
solute carrier family 2 member 4
ISO
RGD
PMID:1881917
RGD:2306204
NCBI chr 5:32,238,095...32,244,022
Ensembl chr 5:32,238,095...32,244,021
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SNAP91
synaptosome associated protein 91
is_active_in
IBA
GO_Central
GO_REF:0000033
NCBI chr12:43,919,925...44,058,315
Ensembl chr12:43,919,925...44,058,616
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SNX9
sorting nexin 9
located_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:47,346,214...47,457,417
Ensembl chr 1:47,343,668...47,455,937
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SORT1
sortilin 1
located_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:42,454,091...42,521,251
Ensembl chr 6:42,453,942...42,516,740
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SPHK1
sphingosine kinase 1
located_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:4,311,698...4,314,773
Ensembl chr 9:4,311,683...4,314,483
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STON1
stonin 1
located_in
IEA
Ensembl
GO_REF:0000107
NCBI chr10:50,421,635...50,470,302
Ensembl chr10:50,436,715...50,467,878
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TFAP2A
transcription factor AP-2 alpha
located_in
ISO
(PMID:26437238)
MGI
PMID:26437238
NCBI chr35:10,157,043...10,180,484
Ensembl chr35:10,157,882...10,180,270
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TFRC
transferrin receptor
located_in
IEA
Ensembl
GO_REF:0000107
NCBI chr33:29,206,024...29,237,221
Ensembl chr33:29,208,609...29,238,242
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TNK2
tyrosine kinase non receptor 2
located_in
ISO
(PMID:21169560)
UniProt
PMID:21169560
NCBI chr33:29,153,636...29,177,568
Ensembl chr33:29,152,851...29,179,718
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WDFY1
WD repeat and FYVE domain containing 1
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr37:29,544,956...29,658,544
Ensembl chr37:29,444,082...29,677,312
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AP2A1
adaptor related protein complex 2 subunit alpha 1
part_of
IEA IBA
Ensembl GO_Central UniProt InterPro
GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117
NCBI chr 1:106,752,326...106,784,803
Ensembl chr 1:106,751,800...106,784,663
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AP2A2
adaptor related protein complex 2 subunit alpha 2
part_of
IEA IBA
InterPro GO_Central Ensembl UniProt
GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117
NCBI chr18:45,269,962...45,358,020
Ensembl chr18:45,253,772...45,358,018
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AP2B1
adaptor related protein complex 2 subunit beta 1
part_of
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:37,946,761...38,078,074
Ensembl chr 9:37,946,788...38,078,041
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AP2M1
adaptor related protein complex 2 subunit mu 1
part_of
IEA IBA
Ensembl GO_Central
GO_REF:0000033 GO_REF:0000107
NCBI chr34:17,071,199...17,080,445
Ensembl chr34:17,071,235...17,080,445
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AP2S1
adaptor related protein complex 2 subunit sigma 1
part_of
ISO IEA
RGD InterPro
PMID:7593184
GO_REF:0000002 RGD:2306270
NCBI chr 1:109,094,098...109,105,233
Ensembl chr 1:109,082,221...109,105,230
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BTBD8
BTB domain containing 8
located_in
ISO
PMID:29262337
UniProt
PMID:29262337
RGD:13601995
NCBI chr 6:56,756,682...56,849,849
Ensembl chr 6:56,698,320...56,900,173
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EPS15
epidermal growth factor receptor pathway substrate 15
part_of
ISO
(PMID:17626015)
UniProt
PMID:17626015
NCBI chr15:9,834,285...9,895,755
Ensembl chr15:9,787,260...9,893,540
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SGIP1
SH3GL interacting endocytic adaptor 1
part_of
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:43,741,507...43,944,289
Ensembl chr 5:43,746,506...43,943,414
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SLC18A3
solute carrier family 18 member A3
part_of
ISO IBA
RGD GO_Central
PMID:14724281
GO_REF:0000033 RGD:2317430
NCBI chr28:1,476,873...1,478,538
Ensembl chr28:1,476,774...1,478,505
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STON1
stonin 1
part_of
IBA
GO_Central
GO_REF:0000033
NCBI chr10:50,421,635...50,470,302
Ensembl chr10:50,436,715...50,467,878
G
STON2
stonin 2
part_of
IBA
GO_Central
GO_REF:0000033
NCBI chr 8:53,591,194...53,725,710
Ensembl chr 8:53,597,780...53,725,688
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TBC1D5
TBC1 domain family member 5
part_of located_in
IEA ISO
(PMID:24603492)
Ensembl UniProt
PMID:24603492
GO_REF:0000107
NCBI chr23:25,206,825...25,758,026
Ensembl chr23:25,254,448...25,757,385
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CLTA
clathrin light chain A
part_of
IEA
InterPro
GO_REF:0000002
NCBI chr11:52,636,328...52,681,258
Ensembl chr11:52,615,039...52,681,270
G
CLTB
clathrin light chain B
part_of
IEA
InterPro
GO_REF:0000002
NCBI chr 4:36,915,106...36,935,565
Ensembl chr 4:36,791,891...36,935,278
G
CLTC
clathrin heavy chain
part_of
IEA
InterPro
GO_REF:0000002
NCBI chr 9:34,116,344...34,183,023
Ensembl chr 9:34,116,634...34,182,719
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CLTCL1
clathrin heavy chain like 1
part_of
IEA
InterPro
GO_REF:0000002
NCBI chr26:29,907,235...30,002,136
Ensembl chr26:29,906,278...30,002,128
G
DAB2
DAB adaptor protein 2
part_of
ISO
(PMID:11247302)
UniProt
PMID:11247302
NCBI chr 4:69,625,874...69,648,349
Ensembl chr 4:69,625,527...69,648,321
G
EPS15
epidermal growth factor receptor pathway substrate 15
part_of
IBA
GO_Central
GO_REF:0000033
NCBI chr15:9,834,285...9,895,755
Ensembl chr15:9,787,260...9,893,540
G
EPS15L1
epidermal growth factor receptor pathway substrate 15 like 1
part_of
IBA
GO_Central
GO_REF:0000033
NCBI chr20:46,064,709...46,161,535
Ensembl chr20:46,064,775...46,161,535
G
GLIPR2
GLI pathogenesis related 2
part_of
IEA
InterPro
GO_REF:0000002
NCBI chr11:52,622,460...52,634,602
Ensembl chr11:52,615,039...52,681,270
G
PICALM
phosphatidylinositol binding clathrin assembly protein
part_of
IEA
Ensembl
GO_REF:0000107
NCBI chr21:13,437,819...13,540,167
Ensembl chr21:13,437,925...13,539,616
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SYNJ1
synaptojanin 1
part_of
ISO
PMID:9428629
ParkinsonsUK-UCL
PMID:9428629
RGD:11059574
NCBI chr31:27,308,169...27,399,226
Ensembl chr31:27,308,169...27,399,197
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