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ONTOLOGY REPORT - ANNOTATIONS


Term:clathrin-coated pit
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Accession:GO:0005905 term browser browse the term
Definition:A part of the endomembrane system in the form of an invagination of a membrane upon which a clathrin coat forms, and that can be converted by vesicle budding into a clathrin-coated vesicle. Coated pits form on the plasma membrane, where they are involved in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane, in the trans-Golgi network, and on some endosomes.
Synonyms:exact_synonym: coated pit
 xref: NIF_Subcellular:sao1969557946


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clathrin-coated pit term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ackr3 atypical chemokine receptor 3 located_in ISO (PMID:22457824) UniProt PMID:22457824 NCBI chrNW_004955453:195,346...218,034
Ensembl chrNW_004955453:195,346...218,034
JBrowse link
G Adcy8 adenylate cyclase 8 located_in ISO PMID:19158400 UniProt PMID:19158400 RGD:13800545 NCBI chrNW_004955461:5,497,708...5,725,574
Ensembl chrNW_004955461:5,497,628...5,725,574
JBrowse link
G Ap2m1 adaptor related protein complex 2 subunit mu 1 located_in ISO (PMID:31104773) UniProt PMID:31104773 NCBI chrNW_004955420:23,281,720...23,290,430
Ensembl chrNW_004955420:23,281,720...23,290,430
JBrowse link
G Bcl2l1 BCL2 like 1 located_in ISO PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chrNW_004955422:29,254,440...29,307,104
Ensembl chrNW_004955422:29,254,216...29,308,174
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 is_active_in ISO (PMID:16923969) MGI PMID:16923969 NCBI chrNW_004955457:12,235,780...12,315,680
Ensembl chrNW_004955457:12,235,780...12,316,727
JBrowse link
G Ccdc32 coiled-coil domain containing 32 part_of ISO (PMID:33859415) UniProt PMID:33859415 NCBI chrNW_004955416:7,464,498...7,482,153
Ensembl chrNW_004955416:7,462,770...7,479,242
JBrowse link
G Cdhr5 cadherin related family member 5 ISO RGD PMID:10801787 RGD:633361 NCBI chrNW_004955476:11,435,677...11,442,338
Ensembl chrNW_004955476:11,435,642...11,442,873
JBrowse link
G Clta clathrin light chain A ISO RGD PMID:14985443 RGD:2301373 NCBI chrNW_004955472:96,958...117,230
Ensembl chrNW_004955472:97,235...117,144
JBrowse link
G Cltc clathrin heavy chain located_in ISO (PMID:26437238) MGI PMID:26437238 NCBI chrNW_004955451:3,380,304...3,445,973
Ensembl chrNW_004955451:3,380,304...3,445,973
JBrowse link
G Cltcl1 clathrin heavy chain like 1 located_in ISO (PMID:19509056) UniProt PMID:19509056 NCBI chrNW_004955442:18,688,019...18,803,458
Ensembl chrNW_004955442:18,687,746...18,804,104
JBrowse link
G Cttn cortactin located_in ISO PMID:19995918 UniProt PMID:19995918 RGD:10047197 NCBI chrNW_004955422:15,838,036...15,874,067
Ensembl chrNW_004955422:15,835,145...15,874,108
JBrowse link
G Cubn cubilin located_in ISO PMID:14576052
(PMID:15616221)
UniProt
MGI
PMID:14576052 PMID:15616221 RGD:8554807 NCBI chrNW_004955429:10,789,674...11,038,297
Ensembl chrNW_004955429:10,788,959...11,038,845
JBrowse link
G Dab2 DAB adaptor protein 2 located_in ISO (PMID:12857860) UniProt PMID:12857860 NCBI chrNW_004955426:23,852,752...23,883,030 JBrowse link
G Dgkd diacylglycerol kinase delta located_in ISO (PMID:17880279) UniProt PMID:17880279 NCBI chrNW_004955453:2,740,922...2,802,669
Ensembl chrNW_004955453:2,742,842...2,835,811
JBrowse link
G Dnm1 dynamin 1 located_in ISO (PMID:8101525) UniProt PMID:8101525 NCBI chrNW_004955570:752,335...781,770
Ensembl chrNW_004955570:752,335...781,770
JBrowse link
G Dnm1l dynamin 1 like located_in ISO PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chrNW_004955505:3,025,742...3,081,491
Ensembl chrNW_004955505:3,023,018...3,081,680
JBrowse link
G Dnm2 dynamin 2 located_in ISO (PMID:26437238)
PMID:19995918
RGD
MGI
UniProt
PMID:9725914 PMID:19995918 PMID:26437238 RGD:10047197 RGD:9685132 NCBI chrNW_004955495:1,860,644...1,934,589
Ensembl chrNW_004955495:1,860,644...1,934,818
JBrowse link
G Epn3 epsin 3 located_in ISO (PMID:21115825) MGI PMID:21115825 NCBI chrNW_004955451:11,209,454...11,218,427
Ensembl chrNW_004955451:11,209,634...11,215,073
JBrowse link
G Eps15 epidermal growth factor receptor pathway substrate 15 located_in ISO (PMID:20427320) MGI PMID:20427320 NCBI chrNW_004955464:7,569,570...7,688,098
Ensembl chrNW_004955464:7,569,566...7,688,098
JBrowse link
G Fcho1 FCH and mu domain containing endocytic adaptor 1 located_in
is_active_in
ISO (PMID:22484487)
(PMID:20448150)
MGI
ParkinsonsUK-UCL
PMID:20448150 PMID:22484487 NCBI chrNW_004955524:3,451,204...3,470,163
Ensembl chrNW_004955524:3,450,529...3,465,848
JBrowse link
G Fcho2 FCH and mu domain containing endocytic adaptor 2 located_in
is_active_in
ISO (PMID:21762413), (PMID:22484487)
(PMID:20448150)
MGI
ParkinsonsUK-UCL
UniProt
PMID:20448150 PMID:21762413 PMID:22484487 NCBI chrNW_004955425:27,506,645...27,632,983
Ensembl chrNW_004955425:27,506,660...27,632,983
JBrowse link
G Fchsd2 FCH and double SH3 domains 2 located_in ISO (PMID:29887380) UniProt PMID:29887380 NCBI chrNW_004955414:18,343,832...18,597,675
Ensembl chrNW_004955414:18,343,832...18,597,675
JBrowse link
G Hip1r huntingtin interacting protein 1 related located_in ISO (PMID:10613908), (PMID:11564758) MGI PMID:10613908 PMID:11564758 NCBI chrNW_004955482:5,885,807...5,896,386
Ensembl chrNW_004955482:5,884,839...5,896,389
JBrowse link
G Hspd1 heat shock protein family D (Hsp60) member 1 located_in ISO (PMID:11807771) BHF-UCL PMID:11807771 NCBI chrNW_004955403:3,062,724...3,073,419
Ensembl chrNW_004955403:3,063,133...3,073,419
JBrowse link
G Inpp5f inositol polyphosphate-5-phosphatase F located_in ISO (PMID:25869669) ParkinsonsUK-UCL PMID:25869669 NCBI chrNW_004955551:634,724...641,266
Ensembl chrNW_004955551:570,304...640,243
JBrowse link
G Itsn1 intersectin 1 located_in ISO (PMID:26437238)
(PMID:20946875), (PMID:29887380)
RGD
MGI
UniProt
PMID:19258322 PMID:20946875 PMID:26437238 PMID:29887380 RGD:13461864 NCBI chrNW_004955407:33,056,004...33,275,681
Ensembl chrNW_004955407:33,113,319...33,275,675
JBrowse link
G Ldlr low density lipoprotein receptor located_in ISO (PMID:15166224), (PMID:6091915) BHF-UCL PMID:6091915 PMID:15166224 NCBI chrNW_004955495:2,114,702...2,135,584
Ensembl chrNW_004955495:2,114,434...2,138,056
JBrowse link
G LOC102027549 serotransferrin located_in ISO (PMID:12857860)
(PMID:20427320)
UniProt
MGI
PMID:12857860 PMID:20427320 NCBI chrNW_004955501:4,801,710...4,832,025
Ensembl chrNW_004955501:4,801,885...4,831,910
JBrowse link
G Lrp2 LDL receptor related protein 2 located_in ISO (PMID:15616221) MGI PMID:15616221 NCBI chrNW_004955449:5,155,109...5,314,886
Ensembl chrNW_004955449:5,160,946...5,314,948
JBrowse link
G Myo6 myosin VI NOT|located_in ISO (PMID:12857860) UniProt PMID:12857860 NCBI chrNW_004955502:4,219,067...4,356,988
Ensembl chrNW_004955502:4,218,885...4,356,988
JBrowse link
G Necap1 NECAP endocytosis associated 1 located_in ISO (PMID:14555962) UniProt PMID:14555962 NCBI chrNW_004955413:6,737,785...6,751,672
Ensembl chrNW_004955413:6,737,785...6,754,162
JBrowse link
G Numb NUMB endocytic adaptor protein located_in ISO (PMID:26437238) MGI PMID:26437238 NCBI chrNW_004955523:2,025,652...2,076,037 JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein located_in ISO (PMID:25898166)
(PMID:12832620)
(PMID:10436022)
ARUK-UCL
UniProt
PMID:10436022 PMID:12832620 PMID:25898166 NCBI chrNW_004955414:6,871,220...6,970,569
Ensembl chrNW_004955414:6,871,520...6,969,208
JBrowse link
G Rab35 RAB35, member RAS oncogene family located_in ISO (PMID:16950109) UniProt PMID:16950109 NCBI chrNW_004955455:11,484,557...11,502,630
Ensembl chrNW_004955455:11,484,557...11,502,630
JBrowse link
G Reps1 RALBP1 associated Eps domain containing 1 located_in ISO (PMID:20946875) UniProt PMID:20946875 NCBI chrNW_004955436:20,677,676...20,752,842
Ensembl chrNW_004955436:20,713,655...20,752,842
JBrowse link
G Sele selectin E located_in ISO (PMID:18029551) BHF-UCL PMID:18029551 NCBI chrNW_004955462:7,564,437...7,575,297 JBrowse link
G Sgip1 SH3GL interacting endocytic adaptor 1 located_in ISO (PMID:20946875) UniProt PMID:20946875 NCBI chrNW_004955423:24,155,401...24,353,166
Ensembl chrNW_004955423:24,157,368...24,353,206
JBrowse link
G Slc2a4 solute carrier family 2 member 4 ISO RGD PMID:1881917 RGD:2306204 NCBI chrNW_004955467:9,630,304...9,636,005
Ensembl chrNW_004955467:9,630,304...9,636,005
JBrowse link
G Snx9 sorting nexin 9 located_in ISO (PMID:15703209) UniProt PMID:15703209 NCBI chrNW_004955439:4,422,385...4,503,408
Ensembl chrNW_004955439:4,421,297...4,503,393
JBrowse link
G Sort1 sortilin 1 located_in ISO (PMID:11331584) BHF-UCL PMID:11331584 NCBI chrNW_004955435:12,725,952...12,819,280
Ensembl chrNW_004955435:12,730,270...12,819,029
JBrowse link
G Sphk1 sphingosine kinase 1 located_in ISO (PMID:24929359) UniProt PMID:24929359 NCBI chrNW_004955506:5,902,079...5,906,639
Ensembl chrNW_004955506:5,902,345...5,904,988
JBrowse link
G Ston1 stonin 1 located_in ISO (PMID:26437238) MGI PMID:26437238 NCBI chrNW_004955441:15,071,765...15,126,534
Ensembl chrNW_004955441:15,112,555...15,127,354
JBrowse link
G Tfap2a transcription factor AP-2 alpha located_in ISO (PMID:26437238) MGI PMID:26437238 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929
JBrowse link
G Tfrc transferrin receptor located_in ISO (PMID:12857860)
(PMID:18434600)
UniProt
MGI
PMID:12857860 PMID:18434600 NCBI chrNW_004955420:12,348,392...12,372,714
Ensembl chrNW_004955420:12,348,821...12,372,691
JBrowse link
G Tnk2 tyrosine kinase non receptor 2 located_in ISO (PMID:21169560) UniProt PMID:21169560 NCBI chrNW_004955420:12,302,463...12,337,976
Ensembl chrNW_004955420:12,300,572...12,338,058
JBrowse link
AP-2 adaptor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap2a1 adaptor related protein complex 2 subunit alpha 1 part_of ISO (PMID:23676497) UniProt PMID:23676497 NCBI chrNW_004955559:1,117,380...1,143,403
Ensembl chrNW_004955559:1,117,636...1,143,409
JBrowse link
G Ap2a2 adaptor related protein complex 2 subunit alpha 2 part_of ISO (PMID:23676497)
PMID:12086608
UniProt
CAFA
PMID:12086608 PMID:23676497 RGD:12793054 NCBI chrNW_004955476:11,184,944...11,229,385
Ensembl chrNW_004955476:11,185,223...11,229,409
JBrowse link
G Ap2b1 adaptor related protein complex 2 subunit beta 1 part_of ISO (PMID:23676497)
(PMID:12086608)
UniProt
CAFA
PMID:12086608 PMID:23676497 NCBI chrNW_004955481:10,061,021...10,175,070
Ensembl chrNW_004955481:10,064,220...10,175,627
JBrowse link
G Ap2m1 adaptor related protein complex 2 subunit mu 1 part_of ISO (PMID:23676497)
PMID:12086608
UniProt
CAFA
PMID:12086608 PMID:23676497 RGD:12793054 NCBI chrNW_004955420:23,281,720...23,290,430
Ensembl chrNW_004955420:23,281,720...23,290,430
JBrowse link
G Ap2s1 adaptor related protein complex 2 subunit sigma 1 part_of ISO PMID:2040623
(PMID:12086608)
MGI
CAFA
RGD
PMID:2040623 PMID:7593184 PMID:12086608 RGD:2306270 RGD:727584 NCBI chrNW_004955574:835,272...845,710
Ensembl chrNW_004955574:830,910...846,161
JBrowse link
G Eps15 epidermal growth factor receptor pathway substrate 15 part_of ISO (PMID:17626015) UniProt PMID:17626015 NCBI chrNW_004955464:7,569,570...7,688,098
Ensembl chrNW_004955464:7,569,566...7,688,098
JBrowse link
G Sgip1 SH3GL interacting endocytic adaptor 1 part_of ISO (PMID:17626015) UniProt PMID:17626015 NCBI chrNW_004955423:24,155,401...24,353,166
Ensembl chrNW_004955423:24,157,368...24,353,206
JBrowse link
G Slc18a3 solute carrier family 18 member A3 ISO RGD PMID:14724281 RGD:2317430 NCBI chrNW_004955556:696,779...698,869
Ensembl chrNW_004955556:696,974...698,566
JBrowse link
G Tbc1d5 TBC1 domain family member 5 located_in ISO (PMID:24603492) UniProt PMID:24603492 NCBI chrNW_004955430:9,411,865...9,966,710
Ensembl chrNW_004955430:9,410,475...9,940,460
JBrowse link
clathrin coat of coated pit term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dab2 DAB adaptor protein 2 part_of ISO (PMID:11247302) UniProt PMID:11247302 NCBI chrNW_004955426:23,852,752...23,883,030 JBrowse link
G Eps15 epidermal growth factor receptor pathway substrate 15 part_of ISO (PMID:18434600) MGI PMID:18434600 NCBI chrNW_004955464:7,569,570...7,688,098
Ensembl chrNW_004955464:7,569,566...7,688,098
JBrowse link
G Eps15l1 epidermal growth factor receptor pathway substrate 15 like 1 part_of ISO (PMID:18434600) MGI PMID:18434600 NCBI chrNW_004955524:1,264,035...1,309,394
Ensembl chrNW_004955524:1,272,565...1,309,294
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein part_of ISO (PMID:10436022), (PMID:16262731) BHF-UCL PMID:10436022 PMID:16262731 NCBI chrNW_004955414:6,871,220...6,970,569
Ensembl chrNW_004955414:6,871,520...6,969,208
JBrowse link
G Synj1 synaptojanin 1 part_of ISO PMID:9428629 ParkinsonsUK-UCL PMID:9428629 RGD:11059574 NCBI chrNW_004955407:32,094,076...32,175,676
Ensembl chrNW_004955407:32,093,479...32,175,795
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 12826
    cellular anatomical structure 12673
      membrane 5173
        clathrin-coated pit 53
          clathrin coat of coated pit + 13
paths to the root