Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:actin filament
go back to main search page
Accession:GO:0005884 term browser browse the term
Definition:A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane.
Synonyms:exact_synonym: microfilament
 xref: FMA:63850;   NIF_Subcellular:sao1588493326;   Wikipedia:Actin

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
actin filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl interactor 2 located_in ISO (PMID:15572692) UniProt PMID:15572692 NCBI chrNW_004936631:30,109...101,748
Ensembl chrNW_004936631:30,199...98,511 		JBrowse link
G Ackr2 atypical chemokine receptor 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936695:2,272,978...2,274,982
Ensembl chrNW_004936695:2,273,797...2,274,951 		JBrowse link
G Acta1 actin alpha 1, skeletal muscle located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936484:20,236,320...20,239,385
Ensembl chrNW_004936484:20,236,320...20,239,430 		JBrowse link
G Acta2 actin alpha 2, smooth muscle located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936735:266,918...283,858
Ensembl chrNW_004936735:266,754...284,377 		JBrowse link
G Actb actin beta located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936765:667,107...670,627
Ensembl chrNW_004936765:667,053...670,672 		JBrowse link
G Actbl2 actin beta like 2 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936480:10,524,713...10,526,021 JBrowse link
G Actc1 actin alpha cardiac muscle 1 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936673:1,092,700...1,098,256
Ensembl chrNW_004936673:1,092,717...1,100,331 		JBrowse link
G Actg1 actin gamma 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936594:5,170,711...5,173,251
Ensembl chrNW_004936594:5,170,711...5,173,247 		JBrowse link
G Actg2 actin gamma 2, smooth muscle located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936556:174,602...220,088
Ensembl chrNW_004936556:174,602...220,285 		JBrowse link
G Actn1 actinin alpha 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:12,124,489...12,217,223
Ensembl chrNW_004936495:12,124,443...12,217,242 		JBrowse link
G Actr3 actin related protein 3 located_in ISO RGD PMID:10209028 RGD:2306208 NCBI chrNW_004936469:55,639,345...55,699,330
Ensembl chrNW_004936469:55,639,068...55,699,640 		JBrowse link
G Afap1 actin filament associated protein 1 ISO RGD PMID:12114187 RGD:625602 NCBI chrNW_004936477:19,288,075...19,418,543
Ensembl chrNW_004936477:19,287,856...19,418,568 		JBrowse link
G Aif1 allograft inflammatory factor 1 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936727:1,907,493...1,909,350
Ensembl chrNW_004936727:1,907,505...1,909,338 		JBrowse link
G Aif1l allograft inflammatory factor 1 like located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936487:17,961,922...17,979,721
Ensembl chrNW_004936487:17,961,854...17,979,749 		JBrowse link
G Akap13 A-kinase anchoring protein 13 located_in ISO (MGI:5308772|PMID:20139090) UniProt PMID:20139090 MGI:5308772 NCBI chrNW_004936483:11,661,862...11,977,292 JBrowse link
G Amot angiomotin located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936499:2,594,190...2,661,307
Ensembl chrNW_004936499:2,594,239...2,661,359 		JBrowse link
G Anxa1 annexin A1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936503:9,124,314...9,142,372
Ensembl chrNW_004936503:9,124,264...9,142,413 		JBrowse link
G Apc2 APC regulator of WNT signaling pathway 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:767,115...787,321
Ensembl chrNW_004936588:767,066...786,951 		JBrowse link
G Avil advillin located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:1,930,447...1,952,069
Ensembl chrNW_004936646:1,930,656...1,948,991 		JBrowse link
G Cald1 caldesmon 1 ISO RGD PMID:3384851 RGD:2303065 NCBI chrNW_004936579:868,681...1,046,198
Ensembl chrNW_004936579:868,500...1,046,257 		JBrowse link
G Cd2ap CD2 associated protein located_in
is_active_in		 IEA
ISO		 (PMID:17606992) Ensembl
MGI		 PMID:17606992 GO_REF:0000107 NCBI chrNW_004936476:12,890,595...12,989,046
Ensembl chrNW_004936476:12,890,468...12,987,843 		JBrowse link
G Cobl cordon-bleu WH2 repeat protein located_in ISO (MGI:3765263|PMID:17956734) BHF-UCL PMID:17956734 MGI:3765263 NCBI chrNW_004936686:621,502...872,824 JBrowse link
G Coro1a coronin 1A located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:12,338,542...12,344,236
Ensembl chrNW_004936501:12,338,542...12,344,265 		JBrowse link
G Coro1b coronin 1B located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:2,307,974...2,312,487
Ensembl chrNW_004936599:2,307,761...2,312,938 		JBrowse link
G Cotl1 coactosin like F-actin binding protein 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936641:3,422,734...3,458,830
Ensembl chrNW_004936641:3,423,144...3,455,432 		JBrowse link
G Cttn cortactin located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936599:481,234...503,857
Ensembl chrNW_004936599:481,243...501,743 		JBrowse link
G Dapk3 death associated protein kinase 3 ISO RGD PMID:10602480 RGD:8554171 NCBI chrNW_004936588:2,246,142...2,257,733
Ensembl chrNW_004936588:2,244,708...2,257,779 		JBrowse link
G Dbn1 drebrin 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936597:1,735,589...1,751,628
Ensembl chrNW_004936597:1,735,380...1,747,569 		JBrowse link
G Dbnl drebrin like located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936478:19,007,630...19,021,068
Ensembl chrNW_004936478:19,007,672...19,020,361 		JBrowse link
G Diaph1 diaphanous related formin 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936504:12,548,452...12,645,236
Ensembl chrNW_004936504:12,548,452...12,643,399 		JBrowse link
G Diaph2 diaphanous related formin 2 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936584:2,286,919...3,081,652
Ensembl chrNW_004936584:2,287,288...3,076,788 		JBrowse link
G Diaph3 diaphanous related formin 3 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936705:1,381,025...1,833,890
Ensembl chrNW_004936705:1,380,445...1,731,280 		JBrowse link
G Dlc1 DLC1 Rho GTPase activating protein located_in ISO RGD PMID:15506980 RGD:1624304 NCBI chrNW_004936573:2,493,051...2,658,396
Ensembl chrNW_004936573:2,492,875...2,658,714 		JBrowse link
G Dmtn dematin actin binding protein located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:5,884,746...5,911,171
Ensembl chrNW_004936555:5,896,471...5,910,098 		JBrowse link
G Dnaja3 DnaJ heat shock protein family (Hsp40) member A3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:43,898...74,939
Ensembl chrNW_004936694:44,635...74,958 		JBrowse link
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A located_in ISO (PMID:24327345) ARUK-UCL PMID:24327345 NCBI chrNW_004936500:5,317,109...5,423,593
Ensembl chrNW_004936500:5,316,164...5,404,353 		JBrowse link
G Ezr ezrin located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:10,413,374...10,457,771
Ensembl chrNW_004936489:10,412,710...10,458,201 		JBrowse link
G Fhdc1 FH2 domain containing 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936689:2,803,714...2,836,903
Ensembl chrNW_004936689:2,803,739...2,838,255 		JBrowse link
G Flna filamin A located_in ISO RGD PMID:15661894 PMID:22872576 RGD:2312435 RGD:7207404 NCBI chrNW_004936809:1,097,288...1,123,206
Ensembl chrNW_004936809:1,097,294...1,123,201 		JBrowse link
G Fmn1 formin 1 located_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936673:1,424,513...1,838,277
Ensembl chrNW_004936673:1,432,927...1,719,966 		JBrowse link
G Fyn FYN proto-oncogene, Src family tyrosine kinase located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936679:388,500...588,518
Ensembl chrNW_004936679:387,387...443,880 		JBrowse link
G Gas2 growth arrest specific 2 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936654:3,326,557...3,448,930
Ensembl chrNW_004936654:3,326,511...3,448,872 		JBrowse link
G Gas2l1 growth arrest specific 2 like 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936657:3,327,363...3,333,087
Ensembl chrNW_004936657:3,327,339...3,333,797 		JBrowse link
G Gas2l2 growth arrest specific 2 like 2 located_in ISO (PMID:24706950) UniProt PMID:24706950 NCBI chrNW_004936490:144,824...153,790 JBrowse link
G Gas2l3 growth arrest specific 2 like 3 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936492:13,273,600...13,305,642
Ensembl chrNW_004936492:13,273,016...13,305,668 		JBrowse link
G Gas7 growth arrest specific 7 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936595:2,890,336...3,011,314
Ensembl chrNW_004936595:2,894,643...2,993,545 		JBrowse link
G Gck glucokinase located_in ISO in primary rat hepatocytes and transfected COS-7 cells RGD PMID:9109397 RGD:2301953 NCBI chrNW_004936478:19,104,477...19,118,915
Ensembl chrNW_004936478:19,105,361...19,158,733 		JBrowse link
G Gdpd2 glycerophosphodiester phosphodiesterase domain containing 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936762:1,048,597...1,060,085
Ensembl chrNW_004936762:1,048,586...1,060,153 		JBrowse link
G Gjb6 gap junction protein beta 6 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936720:1,485,895...1,494,673
Ensembl chrNW_004936720:1,493,733...1,494,518 		JBrowse link
G Gng12 G protein subunit gamma 12 located_in ISO RGD PMID:9492299 RGD:2314449 NCBI chrNW_004936591:3,860,668...3,983,305
Ensembl chrNW_004936591:3,977,507...3,980,065 		JBrowse link
G Hck HCK proto-oncogene, Src family tyrosine kinase located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:18,996,016...19,017,908
Ensembl chrNW_004936485:18,978,412...19,017,908 		JBrowse link
G Hcls1 hematopoietic cell-specific Lyn substrate 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936536:8,065,489...8,084,777
Ensembl chrNW_004936536:8,065,464...8,083,923 		JBrowse link
G Inpp5d inositol polyphosphate-5-phosphatase D ISO RGD PMID:15661894 RGD:2312435 NCBI chrNW_004936525:4,046,609...4,154,715
Ensembl chrNW_004936525:4,048,492...4,154,618 		JBrowse link
G Keap1 kelch like ECH associated protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:785,059...793,775
Ensembl chrNW_004936659:782,340...793,688 		JBrowse link
G Lcp1 lymphocyte cytosolic protein 1 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936857:646,363...726,338
Ensembl chrNW_004936857:646,118...698,035 		JBrowse link
G Lmod1 leiomodin 1 located_in ISO PMID:10520227 UniProt PMID:10520227 RGD:11344950 NCBI chrNW_004936567:2,557,090...2,598,069
Ensembl chrNW_004936567:2,557,080...2,596,818 		JBrowse link
G Lmod2 leiomodin 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936605:1,829,187...1,838,385
Ensembl chrNW_004936605:1,830,405...1,838,400 		JBrowse link
G LOC101956075 growth arrest-specific protein 7-like located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936509:1,572,355...1,574,123 JBrowse link
G LOC101961296 tropomyosin alpha-3 chain-like located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936683:532,671...533,883 JBrowse link
G LOC101961439 twinfilin-2 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936529:3,538,813...3,555,562
Ensembl chrNW_004936529:3,538,862...3,555,593 		JBrowse link
G LOC101965647 growth arrest-specific protein 7-like located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936551:5,183,603...5,184,596 JBrowse link
G LOC101969631 tropomyosin alpha-3 chain-like located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936709:315,656...316,421 JBrowse link
G LOC101972345 growth arrest-specific protein 7-like located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936813:60,226...61,166 JBrowse link
G LOC101977610 growth arrest-specific protein 7-like located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936476:18,113,277...18,114,184 JBrowse link
G Mark2 microtubule affinity regulating kinase 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:5,226,603...5,287,677
Ensembl chrNW_004936599:5,226,496...5,287,683 		JBrowse link
G Mical1 microtubule associated monooxygenase, calponin and LIM domain containing 1 located_in
is_active_in		 IEA
ISO		 (PMID:33393173) Ensembl
UniProt		 PMID:33393173 GO_REF:0000107 NCBI chrNW_004936564:5,568,613...5,579,402
Ensembl chrNW_004936564:5,568,767...5,577,915 		JBrowse link
G Mical2 microtubule associated monooxygenase, calponin and LIM domain containing 2 located_in
is_active_in		 IEA
ISO		 (PMID:29343822) Ensembl
UniProt		 PMID:29343822 GO_REF:0000107 NCBI chrNW_004936528:6,217,130...6,349,891
Ensembl chrNW_004936528:6,217,112...6,349,937 		JBrowse link
G Misp mitotic spindle positioning located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:290,620...294,058
Ensembl chrNW_004936588:290,662...294,248 		JBrowse link
G Myh9 myosin heavy chain 9 ISO RGD PMID:21598299 RGD:12798522 NCBI chrNW_004936492:4,384,215...4,466,229
Ensembl chrNW_004936492:4,384,215...4,466,262 		JBrowse link
G Myo1b myosin IB located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936506:6,832,132...7,004,262
Ensembl chrNW_004936506:6,832,670...7,004,273 		JBrowse link
G Myo5a myosin VA located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:14,105,832...14,257,386
Ensembl chrNW_004936471:14,111,841...14,254,246 		JBrowse link
G Myo6 myosin VI located_in ISO (PMID:12857860) UniProt PMID:12857860 NCBI chrNW_004936788:1,125,332...1,264,372
Ensembl chrNW_004936788:1,174,544...1,262,746 		JBrowse link
G Myo9a myosin IXA located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:31,255,387...31,548,819
Ensembl chrNW_004936471:31,259,652...31,473,926 		JBrowse link
G Myo9b myosin IXB located_in ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:9348541 GO_REF:0000107 GO_REF:0000118 RGD:1581711 NCBI chrNW_004936596:3,617,680...3,697,332
Ensembl chrNW_004936596:3,618,659...3,697,277 		JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:6,001,126...6,135,663
Ensembl chrNW_004936498:6,001,014...6,086,614 		JBrowse link
G Palld palladin, cytoskeletal associated protein located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936516:786,358...1,151,910
Ensembl chrNW_004936516:802,484...1,151,801 		JBrowse link
G Pawr pro-apoptotic WT1 regulator located_in ISO PMID:16229834 UniProt
RGD		 PMID:15817164 PMID:16229834 RGD:8554822 RGD:9835355 NCBI chrNW_004936698:650,225...746,593
Ensembl chrNW_004936698:650,953...747,057 		JBrowse link
G Pls1 plastin 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936540:4,205,871...4,323,121
Ensembl chrNW_004936540:4,205,844...4,323,120 		JBrowse link
G Pls3 plastin 3 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936499:246,042...335,440
Ensembl chrNW_004936499:246,042...335,440 		JBrowse link
G Pof1b POF1B actin binding protein located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936547:6,031,281...6,101,451
Ensembl chrNW_004936547:6,029,831...6,101,451 		JBrowse link
G Pstpip1 proline-serine-threonine phosphatase interacting protein 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:35,272,263...35,294,942
Ensembl chrNW_004936471:35,272,137...35,313,154 		JBrowse link
G Pstpip2 proline-serine-threonine phosphatase interacting protein 2 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936517:766,246...830,735
Ensembl chrNW_004936517:765,725...830,761 		JBrowse link
G Ptges3 prostaglandin E synthase 3 ISO RGD PMID:8864660 RGD:5688126 NCBI chrNW_004936646:969,674...990,532 JBrowse link
G Rac1 Rac family small GTPase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936750:107,689...122,679
Ensembl chrNW_004936750:107,689...122,676 		JBrowse link
G Rac2 Rac family small GTPase 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:3,726,375...3,737,961
Ensembl chrNW_004936492:3,726,313...3,736,905 		JBrowse link
G Rhoq ras homolog family member Q located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936508:5,692,482...5,727,608
Ensembl chrNW_004936508:5,692,482...5,727,614 		JBrowse link
G Sgip1 SH3GL interacting endocytic adaptor 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936591:4,815,222...5,015,250
Ensembl chrNW_004936591:4,817,184...5,016,140 		JBrowse link
G Sh2b2 SH2B adaptor protein 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:1,799,610...1,820,889
Ensembl chrNW_004936543:1,799,568...1,822,028 		JBrowse link
G Shroom4 shroom family member 4 located_in ISO (PMID:16249884), (PMID:16684770) UniProt PMID:16249884 PMID:16684770 NCBI chrNW_004936721:2,068,731...2,166,537 JBrowse link
G Sptbn4 spectrin beta, non-erythrocytic 4 located_in ISO (MGI:2181223|PMID:11807096) BHF-UCL PMID:11807096 MGI:2181223 NCBI chrNW_004936661:2,831,132...2,903,619
Ensembl chrNW_004936661:2,827,572...2,903,655 		JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:3,826,802...3,844,406
Ensembl chrNW_004936561:3,825,787...3,844,483 		JBrowse link
G Tek TEK receptor tyrosine kinase located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936611:2,420,176...2,531,726
Ensembl chrNW_004936611:2,420,172...2,531,722 		JBrowse link
G Tfpt TCF3 fusion partner located_in ISO PMID:16229834 UniProt PMID:16229834 RGD:8554822 NCBI chrNW_004936994:234,978...239,425
Ensembl chrNW_004936994:234,992...239,425 		JBrowse link
G Tmod1 tropomodulin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:6,347,089...6,403,996
Ensembl chrNW_004936524:6,326,400...6,403,057 		JBrowse link
G Tpm1 tropomyosin 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:23,643,645...23,670,775
Ensembl chrNW_004936471:23,643,613...23,670,775 		JBrowse link
G Tpm2 tropomyosin 2 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936524:3,679,719...3,687,828
Ensembl chrNW_004936524:3,679,560...3,688,308 		JBrowse link
G Tpm3 tropomyosin 3 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936580:3,860,185...3,893,251
Ensembl chrNW_004936580:3,860,190...3,889,978 		JBrowse link
G Tpm4 tropomyosin 4 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936596:4,406,301...4,423,775
Ensembl chrNW_004936596:4,406,283...4,418,932 		JBrowse link
G Tsc1 TSC complex subunit 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:19,331,183...19,386,841
Ensembl chrNW_004936487:19,331,194...19,386,892 		JBrowse link
G Twf1 twinfilin actin binding protein 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936512:2,280,266...2,293,101
Ensembl chrNW_004936512:2,280,064...2,293,117 		JBrowse link
G Vcl vinculin located_in ISO RGD PMID:15506980 RGD:1624304 NCBI chrNW_004936521:5,051,077...5,163,036
Ensembl chrNW_004936521:5,050,900...5,163,086 		JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:4,022,928...4,035,577
Ensembl chrNW_004936542:4,023,134...4,035,260 		JBrowse link
G Vps16 VPS16 core subunit of CORVET and HOPS complexes located_in ISO (PMID:14668490) MGI PMID:14668490 NCBI chrNW_004936485:15,879,324...15,900,544
Ensembl chrNW_004936485:15,879,327...15,900,544 		JBrowse link
G Vps18 VPS18 core subunit of CORVET and HOPS complexes located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:4,289,487...4,297,634
Ensembl chrNW_004936471:4,289,415...4,298,852 		JBrowse link
G Was WASP actin nucleation promoting factor located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936721:634,685...641,248
Ensembl chrNW_004936721:634,706...641,082 		JBrowse link
G Whrn whirlin located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:3,668,465...3,748,234
Ensembl chrNW_004936487:3,669,104...3,748,238 		JBrowse link
G Wipf1 WAS/WASL interacting protein family member 1 located_in ISO (PMID:22966049) RGD
MGI		 PMID:11687573 PMID:22966049 RGD:634538 NCBI chrNW_004936509:4,314,376...4,427,960 JBrowse link
actin filament branch point term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arpc2 actin related protein 2/3 complex subunit 2 ISO RGD PMID:18256280 RGD:2306202 NCBI chrNW_004936569:758,358...786,995
Ensembl chrNW_004936569:758,199...786,760 		JBrowse link
filamentous actin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acta1 actin alpha 1, skeletal muscle part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:20,236,320...20,239,385
Ensembl chrNW_004936484:20,236,320...20,239,430 		JBrowse link
G Acta2 actin alpha 2, smooth muscle part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936735:266,918...283,858
Ensembl chrNW_004936735:266,754...284,377 		JBrowse link
G Actb actin beta part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936765:667,107...670,627
Ensembl chrNW_004936765:667,053...670,672 		JBrowse link
G Actbl2 actin beta like 2 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936480:10,524,713...10,526,021 JBrowse link
G Actc1 actin alpha cardiac muscle 1 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936673:1,092,700...1,098,256
Ensembl chrNW_004936673:1,092,717...1,100,331 		JBrowse link
G Actg1 actin gamma 1 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:5,170,711...5,173,251
Ensembl chrNW_004936594:5,170,711...5,173,247 		JBrowse link
G Actg2 actin gamma 2, smooth muscle part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936556:174,602...220,088
Ensembl chrNW_004936556:174,602...220,285 		JBrowse link
G Apc2 APC regulator of WNT signaling pathway 2 part_of
located_in		 IEA
ISO		 (PMID:25753423) Ensembl
UniProt		 PMID:25753423 GO_REF:0000107 NCBI chrNW_004936588:767,115...787,321
Ensembl chrNW_004936588:767,066...786,951 		JBrowse link
G Arpc2 actin related protein 2/3 complex subunit 2 ISO RGD PMID:10797548 RGD:11049163 NCBI chrNW_004936569:758,358...786,995
Ensembl chrNW_004936569:758,199...786,760 		JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:8,209,091...8,226,249
Ensembl chrNW_004936471:8,209,057...8,226,353 		JBrowse link
G Carmil1 capping protein regulator and myosin 1 linker 1 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936671:1,404,595...1,632,916
Ensembl chrNW_004936671:1,404,589...1,633,328 		JBrowse link
G Cd2ap CD2 associated protein part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:12,890,595...12,989,046
Ensembl chrNW_004936476:12,890,468...12,987,843 		JBrowse link
G Diaph3 diaphanous related formin 3 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936705:1,381,025...1,833,890
Ensembl chrNW_004936705:1,380,445...1,731,280 		JBrowse link
G Dpysl3 dihydropyrimidinase like 3 part_of ISO PMID:16181627 UniProt PMID:16181627 RGD:8553533 NCBI chrNW_004936504:7,261,334...7,365,828
Ensembl chrNW_004936504:7,261,524...7,365,168 		JBrowse link
G Dusp22 dual specificity phosphatase 22 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936633:1,459,487...1,528,080
Ensembl chrNW_004936633:1,459,386...1,528,082 		JBrowse link
G Ehbp1 EH domain binding protein 1 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936491:7,875,119...8,176,559
Ensembl chrNW_004936491:7,875,014...8,177,654 		JBrowse link
G Ehbp1l1 EH domain binding protein 1 like 1 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936599:3,867,185...3,882,712
Ensembl chrNW_004936599:3,867,005...3,882,732 		JBrowse link
G Espn espin part_of ISO PMID:8799813 UniProt PMID:8799813 RGD:632658 NCBI chrNW_004936623:1,220,435...1,249,743
Ensembl chrNW_004936623:1,220,593...1,248,993 		JBrowse link
G Jam3 junctional adhesion molecule 3 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936684:1,689,594...1,762,066
Ensembl chrNW_004936684:1,692,089...1,762,087 		JBrowse link
G Kptn kaptin, actin binding protein part_of
located_in		 IEA
ISO		 (PMID:24239382) Ensembl
UniProt		 PMID:24239382 GO_REF:0000107 NCBI chrNW_004936664:1,146,003...1,155,571
Ensembl chrNW_004936664:1,146,293...1,152,968 		JBrowse link
G Ldb3 LIM domain binding 3 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936804:196,592...259,168
Ensembl chrNW_004936804:196,598...259,168 		JBrowse link
G LOC101978301 uncharacterized LOC101978301 ISO RGD PMID:10797548 RGD:11049163 NCBI chrNW_004936558:3,418,664...3,421,693 JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 part_of ISO (PMID:25224220) MGI PMID:25224220 NCBI chrNW_004936480:11,082,811...11,156,691
Ensembl chrNW_004936480:11,083,605...11,156,691 		JBrowse link
G Myo18b myosin XVIIIB part_of ISO (PMID:18761673) MGI PMID:18761673 NCBI chrNW_004936657:551,535...764,247 JBrowse link
G Myo1a myosin IA part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:1,238,630...1,258,491
Ensembl chrNW_004936646:1,238,865...1,258,040 		JBrowse link
G Myo1c myosin IC part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:7,614,985...7,639,603
Ensembl chrNW_004936538:7,611,008...7,639,581 		JBrowse link
G Myo1f myosin IF part_of ISO (PMID:17023661) MGI PMID:17023661 NCBI chrNW_004936588:5,299,977...5,331,065
Ensembl chrNW_004936588:5,302,018...5,336,345 		JBrowse link
G Myo3a myosin IIIA part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:1,509,248...1,723,717
Ensembl chrNW_004936484:1,509,235...1,723,554 		JBrowse link
G Myo6 myosin VI part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936788:1,125,332...1,264,372
Ensembl chrNW_004936788:1,174,544...1,262,746 		JBrowse link
G Nckap1 NCK associated protein 1 part_of ISO (MGI:5897521|PMID:27927633) BHF-UCL PMID:27927633 MGI:5897521 NCBI chrNW_004936509:11,525,764...11,624,833
Ensembl chrNW_004936509:11,524,556...11,624,621 		JBrowse link
G Pdlim1 PDZ and LIM domain 1 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936636:4,083,413...4,126,728
Ensembl chrNW_004936636:4,083,071...4,126,739 		JBrowse link
G Pdlim2 PDZ and LIM domain 2 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936555:6,318,813...6,331,556
Ensembl chrNW_004936555:6,318,762...6,331,575 		JBrowse link
G Pdlim3 PDZ and LIM domain 3 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936554:3,844,896...3,874,168
Ensembl chrNW_004936554:3,844,743...3,874,174 		JBrowse link
G Pdlim4 PDZ and LIM domain 4 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936647:2,891,025...2,905,197
Ensembl chrNW_004936647:2,890,510...2,905,203 		JBrowse link
G Pdlim5 PDZ and LIM domain 5 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936687:1,944,095...2,152,501
Ensembl chrNW_004936687:1,944,095...2,152,529 		JBrowse link
G Pdlim7 PDZ and LIM domain 7 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936597:1,759,676...1,773,335
Ensembl chrNW_004936597:1,759,555...1,773,424 		JBrowse link
G Rac3 Rac family small GTPase 3 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:5,527,788...5,530,694
Ensembl chrNW_004936594:5,528,908...5,531,420 		JBrowse link
G Smtn smoothelin part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936755:264,635...285,668
Ensembl chrNW_004936755:264,570...289,260 		JBrowse link
G Smtnl1 smoothelin like 1 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936581:4,955,072...4,965,760
Ensembl chrNW_004936581:4,955,071...4,965,785 		JBrowse link
G Smtnl2 smoothelin like 2 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936677:1,143,823...1,165,200
Ensembl chrNW_004936677:1,143,819...1,165,227 		JBrowse link
G Specc1 sperm antigen with calponin homology and coiled-coil domains 1 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936821:641,863...914,188
Ensembl chrNW_004936821:641,852...914,208 		JBrowse link
G Specc1l sperm antigen with calponin homology and coiled-coil domains 1 like part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936619:448,304...592,981
Ensembl chrNW_004936619:448,303...593,001 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 16802
    cellular anatomical entity 16712
      supramolecular complex 1251
        supramolecular polymer 923
          supramolecular fiber 915
            polymeric cytoskeletal fiber 679
              actin filament 138
                actin filament branch point 1
                actin filament of cell cortex of cell tip 0
                actomyosin contractile ring actin filament 0
                filamentous actin 42
Path 2
Term Annotations click to browse term
  cellular_component 16802
    cellular anatomical entity 16712
      organelle 12060
        non-membrane-bounded organelle 4417
          intracellular non-membrane-bounded organelle 4417
            cytoskeleton 2128
              actin cytoskeleton 512
                actin filament 138
                  actin filament branch point 1
                  actin filament of cell cortex of cell tip 0
                  actomyosin contractile ring actin filament 0
                  filamentous actin 42
paths to the root