Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:actin filament
go back to main search page
Accession:GO:0005884 term browser browse the term
Definition:A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane.
Synonyms:exact_synonym: microfilament
 xref: FMA:63850;   NIF_Subcellular:sao1588493326;   Wikipedia:Actin


show annotations for term's descendants           Sort by:
 
actin filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07025295.1 IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr16:31,734,944...31,946,242 JBrowse link
G Abi2 abl-interactor 2 colocalizes_with ISO (PMID:15572692) RGD PMID:15572692 NCBI chr 9:67,234,612...67,284,504
Ensembl chr 9:67,234,303...67,282,600
JBrowse link
G Ackr2 atypical chemokine receptor 2 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:23633677)
Ensembl
UniProt
RGD
PMID:23633677 GO_REF:0000024, GO_REF:0000107 NCBI chr 8:130,526,521...130,543,566
Ensembl chr 8:130,538,651...130,542,227
JBrowse link
G Acta1 actin, alpha 1, skeletal muscle ISO
IBA
ISS
(PMID:12849983)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:12849983, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr19:56,674,072...56,677,084
Ensembl chr19:56,674,074...56,677,084
JBrowse link
G Actb actin, beta IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:13,715,843...13,718,813
Ensembl chr12:13,715,843...13,718,841
JBrowse link
G Actbl2 actin, beta-like 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:42,829,413...42,832,160
Ensembl chr 2:42,829,413...42,832,160
JBrowse link
G Actc1 actin, alpha, cardiac muscle 1 ISO
IBA
(PMID:16611632), (PMID:19799913)
PMID:21873635
RGD PMID:16611632, PMID:19799913, PMID:21873635 RGD:13792537 NCBI chr 3:105,507,403...105,512,939
Ensembl chr 3:105,507,403...105,512,939
JBrowse link
G Actg1 actin, gamma 1 ISO
IBA
(PMID:28493397)
PMID:21873635
RGD PMID:28493397, PMID:21873635 RGD:13792537 NCBI chr10:109,518,429...109,521,288
Ensembl chr 3:75,643,054...75,644,954
Ensembl chr10:75,643,054...75,644,954
JBrowse link
G Actn1 actinin, alpha 1 colocalizes_with IEA
ISO
GO_REF:0000107
(PMID:23434115), (PMID:24069336)
Ensembl
RGD
PMID:23434115, PMID:24069336 GO_REF:0000107 NCBI chr 6:103,376,557...103,470,497
Ensembl chr 6:103,375,799...103,470,555
JBrowse link
G Actr3 actin related protein 3 colocalizes_with IDA RGD PMID:10209028 RGD:2306208 NCBI chr13:41,695,520...41,738,622
Ensembl chr13:41,695,183...41,738,658
JBrowse link
G Afap1 actin filament associated protein 1 IDA RGD PMID:12114187 RGD:625602 NCBI chr14:79,923,132...80,035,096
Ensembl chr14:79,919,717...79,988,110
JBrowse link
G Aif1 allograft inflammatory factor 1 colocalizes_with ISO
IBA
ISS
(MGI:MGI:3042556|PMID:14756805)
PMID:21873635
GO_REF:0000024
(PMID:18699778)
RGD
UniProt
PMID:14756805, PMID:18699778, PMID:21873635 GO_REF:0000024, MGI:MGI:3042556, RGD:13792537 NCBI chr20:5,161,350...5,167,176
Ensembl chr20:5,161,333...5,166,448
JBrowse link
G Aif1l allograft inflammatory factor 1-like colocalizes_with ISO
IBA
(PMID:18699778)
PMID:21873635
RGD PMID:18699778, PMID:21873635 RGD:13792537 NCBI chr 3:9,237,944...9,262,628
Ensembl chr 3:9,237,944...9,262,628
JBrowse link
G Akap13 A-kinase anchoring protein 13 colocalizes_with ISO (MGI:MGI:5308772|PMID:20139090) RGD PMID:20139090 MGI:MGI:5308772 NCBI chr 1:137,089,558...137,315,272
Ensembl chr 1:137,014,272...137,315,272
JBrowse link
G Amot angiomotin ISO (PMID:11257124) RGD PMID:11257124 NCBI chr  X:116,751,231...116,810,238
Ensembl chr  X:116,751,230...116,792,864
JBrowse link
G Anxa1 annexin A1 colocalizes_with ISO (PMID:22773844) RGD PMID:22773844 NCBI chr 1:237,893,983...237,910,002
Ensembl chr 1:237,893,966...237,910,012
JBrowse link
G Apc2 APC regulator of WNT signaling pathway 2 ISO (PMID:11691822) RGD PMID:11691822 NCBI chr 7:12,258,468...12,280,459
Ensembl chr 7:12,258,468...12,275,609
JBrowse link
G Avil advillin ISS
ISO
GO_REF:0000024
(PMID:29058690)
UniProt
RGD
PMID:29058690 GO_REF:0000024 NCBI chr 7:70,292,565...70,310,588
Ensembl chr 7:70,292,565...70,310,588
JBrowse link
G Cald1 caldesmon 1 IDA RGD PMID:3384851 RGD:2303065 NCBI chr 4:62,103,948...62,291,375
Ensembl chr 4:62,220,736...62,291,489
JBrowse link
G Cnn3 calponin 3 TAS RGD PMID:12564930 RGD:727577 NCBI chr 2:225,005,069...225,036,179
Ensembl chr 2:225,005,019...225,036,188
JBrowse link
G Cobl cordon-bleu WH2 repeat protein colocalizes_with ISO
IBA
IEA
(MGI:MGI:3765263|PMID:17956734)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:17956734, PMID:21873635 GO_REF:0000107, MGI:MGI:3765263, RGD:13792537 NCBI chr14:92,341,949...92,497,169
Ensembl chr14:92,342,957...92,577,936
JBrowse link
G Coro1a coronin 1A ISO (PMID:15800061) RGD PMID:15800061 NCBI chr 1:198,123,883...198,128,890
Ensembl chr 1:198,123,884...198,128,857
JBrowse link
G Coro1b coronin 1B ISO
IEA
(PMID:18775315)
GO_REF:0000107
RGD
Ensembl
PMID:18775315 GO_REF:0000107 NCBI chr 1:219,397,827...219,403,253
Ensembl chr 1:219,397,850...219,403,260
JBrowse link
G Cotl1 coactosin-like F-actin binding protein 1 colocalizes_with IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:52,465,074...52,499,433
Ensembl chr19:52,465,087...52,499,433
JBrowse link
G Cttn cortactin colocalizes_with IMP
IBA
ISS
ISO
PMID:18768925
PMID:21873635
GO_REF:0000024
(PMID:12151401)
UniProt
RGD
PMID:12151401, PMID:18768925, PMID:21873635 GO_REF:0000024, RGD:10047281, RGD:13792537 NCBI chr 1:217,602,698...217,638,196
NCBI chr 1:215,255,385...215,290,882
Ensembl chr 1:217,602,698...217,638,152
Ensembl chr 1:217,602,698...217,638,152
JBrowse link
G Dapk3 death-associated protein kinase 3 IDA RGD PMID:10602480 RGD:8554171 NCBI chr 7:11,392,436...11,400,855
Ensembl chr 7:11,392,437...11,400,805
JBrowse link
G Dbn1 drebrin 1 colocalizes_with IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:10234022, PMID:21873635 RGD:10395287, RGD:13792537 NCBI chr17:9,679,511...9,693,878
Ensembl chr17:9,679,628...9,693,820
JBrowse link
G Dbnl drebrin-like colocalizes_with IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:86,029,335...86,044,364
Ensembl chr14:86,029,335...86,044,364
JBrowse link
G Dlc1 DLC1 Rho GTPase activating protein colocalizes_with IDA RGD PMID:15506980 RGD:1624304 NCBI chr16:58,776,489...59,247,752
Ensembl chr16:59,077,574...59,247,754
JBrowse link
G Dmtn dematin actin binding protein ISO (PMID:22927433) RGD PMID:22927433 NCBI chr15:52,292,762...52,320,385
Ensembl chr15:52,292,765...52,320,385
JBrowse link
G Dnaja3 DnaJ heat shock protein family (Hsp40) member A3 colocalizes_with ISO (PMID:17588722) RGD PMID:17588722 NCBI chr10:11,059,701...11,085,186
Ensembl chr10:11,060,313...11,085,210
JBrowse link
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A colocalizes_with ISO UniProtKB:P60709 (PMID:24327345) RGD PMID:24327345 NCBI chr11:34,858,339...34,958,733
Ensembl chr11:34,865,532...34,956,536
JBrowse link
G Ezr ezrin ISO
ISS
(PMID:11598191)
GO_REF:0000024
RGD
UniProt
PMID:11598191 GO_REF:0000024 NCBI chr 1:47,287,872...47,331,412
Ensembl chr 1:47,287,874...47,331,412
JBrowse link
G Fkbp15 FKBP prolyl isomerase family member 15 colocalizes_with IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:78,133,357...78,229,311
Ensembl chr 5:78,133,886...78,183,122
JBrowse link
G Flna filamin A colocalizes_with IDA RGD PMID:15661894, PMID:22872576 RGD:2312435, RGD:7207404 NCBI chr  X:156,460,785...156,487,245
Ensembl chr  X:156,463,953...156,487,245
JBrowse link
G Fmn1 formin 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:104,783,093...105,170,761
Ensembl chr 3:104,816,987...105,086,436
JBrowse link
G Fyn FYN proto-oncogene, Src family tyrosine kinase ISO (MGI:MGI:3723332|PMID:17623777) RGD PMID:17623777 MGI:MGI:3723332 NCBI chr20:44,436,354...44,630,316
Ensembl chr20:44,436,403...44,630,317
JBrowse link
G Gas2 growth arrest-specific 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:107,234,389...107,363,624
Ensembl chr 1:107,262,659...107,363,788
JBrowse link
G Gas2l1 growth arrest-specific 2 like 1 colocalizes_with ISO
IBA
(PMID:24706950)
PMID:21873635
RGD PMID:24706950, PMID:21873635 RGD:13792537 NCBI chr14:85,308,443...85,318,475
Ensembl chr14:85,308,443...85,318,194
JBrowse link
G Gas2l2 growth arrest-specific 2 like 2 colocalizes_with ISO
IBA
(PMID:24706950)
PMID:21873635
RGD PMID:24706950, PMID:21873635 RGD:13792537 NCBI chr10:70,639,429...70,646,402
Ensembl chr10:70,639,862...70,646,495
JBrowse link
G Gas2l3 growth arrest-specific 2 like 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:29,963,129...29,996,021
Ensembl chr 7:29,959,597...29,986,163
JBrowse link
G Gas7 growth arrest specific 7 ISO
IBA
(MGI:MGI:2159085|PMID:11795944)
PMID:21873635
RGD PMID:11795944, PMID:21873635 MGI:MGI:2159085, RGD:13792537 NCBI chr10:54,010,723...54,240,805
Ensembl chr10:54,126,486...54,236,476
JBrowse link
G Gck glucokinase colocalizes_with IDA in primary rat hepatocytes and transfected COS-7 cells RGD PMID:9109397 RGD:2301953 NCBI chr14:86,149,146...86,191,589
Ensembl chr14:86,148,928...86,190,659
JBrowse link
G Gdpd2 glycerophosphodiester phosphodiesterase domain containing 2 ISO (MGI:MGI:2679742|PMID:12933806) RGD PMID:12933806 MGI:MGI:2679742 NCBI chr  X:70,563,381...70,572,295
Ensembl chr  X:70,563,570...70,572,295
JBrowse link
G Gjb6 gap junction protein, beta 6 ISO (PMID:19285977) RGD PMID:19285977 NCBI chr15:37,400,888...37,411,656
Ensembl chr15:37,400,889...37,410,848
JBrowse link
G Gng12 G protein subunit gamma 12 colocalizes_with IDA RGD PMID:9492299 RGD:2314449 NCBI chr 4:97,634,925...97,763,478
Ensembl chr 4:97,657,671...97,760,102
JBrowse link
G Hck HCK proto-oncogene, Src family tyrosine kinase colocalizes_with ISO
ISS
(PMID:15998323)
GO_REF:0000024
RGD
UniProt
PMID:15998323 GO_REF:0000024 NCBI chr 3:148,579,917...148,623,026
Ensembl chr 3:148,579,920...148,623,033
JBrowse link
G Hcls1 hematopoietic cell specific Lyn substrate 1 colocalizes_with IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:66,736,966...66,759,402
Ensembl chr11:66,736,966...66,759,402
JBrowse link
G Inpp5d inositol polyphosphate-5-phosphatase D IDA RGD PMID:15661894 RGD:2312435 NCBI chr 9:94,745,220...94,850,778
Ensembl chr 9:94,745,217...94,850,771
JBrowse link
G Keap1 Kelch-like ECH-associated protein 1 ISO (MGI:MGI:5619488|PMID:14764898) RGD PMID:14764898 MGI:MGI:5619488 NCBI chr 8:22,250,518...22,259,868
Ensembl chr 8:22,250,518...22,259,779
JBrowse link
G Lcp1 lymphocyte cytosolic protein 1 ISO
IBA
(MGI:MGI:3042556|PMID:14756805)
PMID:21873635
(PMID:16636079)
RGD PMID:14756805, PMID:16636079, PMID:21873635 MGI:MGI:3042556, RGD:13792537 NCBI chr15:57,170,566...57,277,811
Ensembl chr15:57,221,292...57,277,811
JBrowse link
G Lmod1 leiomodin 1 IDA PMID:10520227 UniProt PMID:10520227 RGD:11344950 NCBI chr13:52,147,099...52,189,835
Ensembl chr13:52,147,555...52,190,228
JBrowse link
G Lmod2 leiomodin 2 ISO
ISS
(PMID:26370058)
GO_REF:0000024
RGD
UniProt
PMID:26370058 GO_REF:0000024 NCBI chr 4:51,553,439...51,561,135
Ensembl chr 4:51,553,454...51,561,174
JBrowse link
G LOC100361457 actin, gamma 1 propeptide-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:75,643,053...75,644,978
Ensembl chr 3:75,643,054...75,644,954
JBrowse link
G LOC108348322 GAS2-like protein 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Mark2 microtubule affinity regulating kinase 2 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:23902687)
Ensembl
UniProt
RGD
PMID:23902687 GO_REF:0000024, GO_REF:0000107 NCBI chr 1:222,525,547...222,590,727
Ensembl chr 1:222,525,990...222,590,220
JBrowse link
G Misp mitotic spindle positioning ISO (PMID:23574715) RGD PMID:23574715 NCBI chr 7:12,691,834...12,707,927
Ensembl chr 7:12,697,743...12,707,922
JBrowse link
G Myh9 myosin, heavy chain 9 IDA RGD PMID:21598299 RGD:12798522 NCBI chr 7:118,740,005...118,792,507
Ensembl chr 7:118,741,110...118,792,625
JBrowse link
G Myo1b myosin Ib ISO (PMID:16219689) RGD PMID:16219689 NCBI chr 9:54,706,005...54,766,054
Ensembl chr 9:54,558,202...54,766,054
JBrowse link
G Myo5a myosin VA colocalizes_with ISO
IEA
(PMID:24006491)
GO_REF:0000107
RGD
Ensembl
PMID:24006491 GO_REF:0000107 NCBI chr 8:82,038,966...82,156,507
Ensembl chr 8:82,037,977...82,156,617
JBrowse link
G Myo6 myosin VI ISO (PMID:12857860) RGD PMID:12857860 NCBI chr 8:87,583,649...87,731,271
Ensembl chr 8:87,630,916...87,731,269
JBrowse link
G Myo9b myosin IXb IDA
ISO
IEA
(PMID:16338935), (PMID:16616011), (PMID:8907710)
GO_REF:0000107
RGD
Ensembl
PMID:8907710, PMID:16338935, PMID:16616011, PMID:9348541 GO_REF:0000107, RGD:1581711 NCBI chr16:19,669,373...19,754,065
Ensembl chr16:19,669,411...19,754,069
JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 ISO (PMID:9395435) RGD PMID:9395435 NCBI chr 1:162,768,156...162,883,356
Ensembl chr 1:162,768,156...162,883,355
JBrowse link
G Palld palladin, cytoskeletal associated protein ISO (PMID:11598191) RGD PMID:11598191 NCBI chr16:31,865,712...31,948,168 JBrowse link
G Pawr pro-apoptotic WT1 regulator colocalizes_with IDA PMID:16229834 UniProt
RGD
PMID:16229834, PMID:15817164 RGD:8554822, RGD:9835355 NCBI chr 7:51,273,764...51,353,700
Ensembl chr 7:51,273,771...51,353,068
JBrowse link
G Pls1 plastin 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:103,557,361...103,659,625
Ensembl chr 8:103,557,364...103,608,913
JBrowse link
G Pls3 plastin 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:119,030,311...119,124,268
Ensembl chr  X:119,030,419...119,124,250
JBrowse link
G Pof1b POF1B, actin binding protein ISO (PMID:16773570) RGD PMID:16773570 NCBI chr  X:84,099,618...84,167,717
Ensembl chr  X:84,099,618...84,167,717
JBrowse link
G Pstpip1 proline-serine-threonine phosphatase-interacting protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:60,760,040...60,799,364
Ensembl chr 8:60,760,078...60,799,361
JBrowse link
G Pstpip2 proline-serine-threonine phosphatase-interacting protein 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:74,173,809...74,291,188
Ensembl chr18:74,174,936...74,292,921
JBrowse link
G Ptges3 prostaglandin E synthase 3 IDA RGD PMID:8864660 RGD:5688126 NCBI chr 7:2,479,267...2,497,024
Ensembl chr 7:2,479,311...2,497,013
JBrowse link
G Rac1 Rac family small GTPase 1 colocalizes_with ISO (PMID:19625648) RGD PMID:19625648 NCBI chr12:13,090,316...13,111,841
Ensembl chr12:13,090,172...13,111,873
JBrowse link
G Rac2 Rac family small GTPase 2 colocalizes_with ISO (PMID:19625648) RGD PMID:19625648 NCBI chr 7:119,769,708...119,797,111
Ensembl chr 7:119,783,849...119,797,098
JBrowse link
G Rhoq ras homolog family member Q ISO (PMID:10445846) RGD PMID:10445846 NCBI chr 6:10,533,151...10,568,582
Ensembl chr 6:10,533,151...10,568,581
JBrowse link
G Sh2b2 SH2B adaptor protein 2 ISO (MGI:MGI:3033759|PMID:14993264) RGD PMID:14993264 MGI:MGI:3033759 NCBI chr12:23,471,477...23,501,043
Ensembl chr12:23,473,270...23,501,036
JBrowse link
G Shroom4 shroom family member 4 ISO (PMID:16249884), (PMID:16684770) RGD PMID:16249884, PMID:16684770 NCBI chr  X:16,723,360...16,929,829
Ensembl chr  X:16,719,803...16,929,907
JBrowse link
G Sptbn4 spectrin, beta, non-erythrocytic 4 ISO (MGI:MGI:2181223|PMID:11807096) RGD PMID:11807096 MGI:MGI:2181223 NCBI chr 1:84,168,494...84,254,679
Ensembl chr 1:84,168,495...84,254,645
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase ISO (MGI:MGI:3723332|PMID:17623777) RGD PMID:17623777 MGI:MGI:3723332 NCBI chr 3:153,547,807...153,595,643
Ensembl chr 3:153,580,861...153,595,642
JBrowse link
G Tek TEK receptor tyrosine kinase colocalizes_with ISO (PMID:18425119) RGD PMID:18425119 NCBI chr 5:113,725,717...113,852,799
Ensembl chr 5:113,725,717...113,852,799
JBrowse link
G Tfpt TCF3 fusion partner colocalizes_with IDA PMID:16229834 UniProt PMID:16229834 RGD:8554822 NCBI chr 1:64,162,525...64,172,307
Ensembl chr 1:64,162,672...64,172,470
JBrowse link
G Tmod1 tropomodulin 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:26370058)
Ensembl
UniProt
RGD
PMID:26370058 GO_REF:0000024, GO_REF:0000107 NCBI chr 5:61,635,244...61,712,052
Ensembl chr 5:61,657,507...61,712,051
JBrowse link
G Tpm1 tropomyosin 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:72,814,737...72,841,496
Ensembl chr 8:72,814,740...72,842,228
JBrowse link
G Tpm2 tropomyosin 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:59,016,616...59,025,971
Ensembl chr 5:59,016,622...59,025,631
JBrowse link
G Tpm3 tropomyosin 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:189,423,534...189,451,340
Ensembl chr 2:189,423,559...189,451,029
JBrowse link
G Tpm4 tropomyosin 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:19,385,810...19,399,851
Ensembl chr16:19,385,736...19,399,903
JBrowse link
G Tsc1 TSC complex subunit 1 colocalizes_with ISO (PMID:10806479) RGD PMID:10806479 NCBI chr 3:7,219,955...7,269,063
Ensembl chr 3:7,237,192...7,265,145
JBrowse link
G Twf1 twinfilin actin-binding protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:135,838,647...135,850,542
Ensembl chr 7:135,838,648...135,850,542
JBrowse link
G Twf2 twinfilin actin-binding protein 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:114,897,011...114,909,531
Ensembl chr 8:114,897,011...114,909,531
JBrowse link
G Vcl vinculin colocalizes_with IDA RGD PMID:15506980 RGD:1624304 NCBI chr15:3,455,211...3,544,738
Ensembl chr15:3,455,211...3,544,702
JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes ISO (MGI:MGI:3042340|PMID:14668490) RGD PMID:14668490 MGI:MGI:3042340 NCBI chr 8:48,677,492...48,692,295
Ensembl chr 8:48,677,492...48,692,295
JBrowse link
G Vps16 VPS16 core subunit of CORVET and HOPS complexes ISO (MGI:MGI:3042340|PMID:14668490) RGD PMID:14668490 MGI:MGI:3042340 NCBI chr 3:122,947,887...122,969,543
Ensembl chr 3:122,947,913...122,969,541
JBrowse link
G Vps18 VPS18 core subunit of CORVET and HOPS complexes ISO (MGI:MGI:3042340|PMID:14668490) RGD PMID:14668490 MGI:MGI:3042340 NCBI chr 3:111,097,352...111,108,206
Ensembl chr 3:111,097,326...111,108,295
JBrowse link
G Was WASP actin nucleation promoting factor ISO (PMID:8625410) RGD PMID:8625410 NCBI chr  X:15,155,246...15,164,099
Ensembl chr  X:15,155,230...15,164,105
JBrowse link
G Wasl WASP like actin nucleation promoting factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:51,677,722...51,726,212
Ensembl chr 4:51,677,722...51,726,212
JBrowse link
G Wdr1 WD repeat domain 1 colocalizes_with IDA PMID:20631256 MGI PMID:20631256 RGD:8693352 NCBI chr14:76,990,014...77,023,739
Ensembl chr14:76,989,919...77,023,726
JBrowse link
G Whrn whirlin ISO
IEA
(MGI:MGI:2682448|PMID:12833159)
GO_REF:0000107
RGD
Ensembl
PMID:12833159 GO_REF:0000107, MGI:MGI:2682448 NCBI chr 5:79,235,541...79,317,206
Ensembl chr 5:79,234,950...79,317,206
JBrowse link
G Wipf1 WAS/WASL interacting protein family, member 1 IDA
IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(MGI:MGI:5449090|PMID:22966049)
Ensembl
RGD
PMID:22966049, PMID:11687573, PMID:21873635 GO_REF:0000107, MGI:MGI:5449090, RGD:634538, RGD:13792537 NCBI chr 3:60,150,001...60,207,125
Ensembl chr 3:60,150,021...60,166,013
JBrowse link
G Wipf2 WAS/WASL interacting protein family, member 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:86,776,367...86,813,046
Ensembl chr10:86,795,787...86,812,325
JBrowse link
G Wipf3 WAS/WASL interacting protein family, member 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:84,596,305...84,676,775
Ensembl chr 4:84,597,323...84,676,775
JBrowse link
G Yes1 YES proto-oncogene 1, Src family tyrosine kinase ISO (MGI:MGI:3723332|PMID:17623777) RGD PMID:17623777 MGI:MGI:3723332 NCBI chr 9:121,802,471...121,918,906
Ensembl chr 9:121,802,673...121,902,678
JBrowse link
actin filament branch point term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arpc2 actin related protein 2/3 complex, subunit 2 IDA RGD PMID:18256280 RGD:2306202 NCBI chr 9:81,518,163...81,548,871
Ensembl chr 9:81,518,176...81,548,871
JBrowse link
filamentous actin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actg1 actin, gamma 1 ISO (MGI:MGI:3821785|PMID:18796539) RGD PMID:18796539 MGI:MGI:3821785 NCBI chr10:109,518,429...109,521,288
Ensembl chr 3:75,643,054...75,644,954
Ensembl chr10:75,643,054...75,644,954
JBrowse link
G Apc2 APC regulator of WNT signaling pathway 2 colocalizes_with ISO (PMID:25753423) RGD PMID:25753423 NCBI chr 7:12,258,468...12,280,459
Ensembl chr 7:12,258,468...12,275,609
JBrowse link
G Arpc2 actin related protein 2/3 complex, subunit 2 IDA RGD PMID:10797548 RGD:11049163 NCBI chr 9:81,518,163...81,548,871
Ensembl chr 9:81,518,176...81,548,871
JBrowse link
G Arpc3 actin related protein 2/3 complex, subunit 3 IDA RGD PMID:10797548 RGD:11049163 NCBI chr12:39,653,951...39,667,817
Ensembl chr12:39,653,953...39,667,849
JBrowse link
G Carmil1 capping protein regulator and myosin 1 linker 1 ISO (MGI:MGI:3588909|PMID:16054028) RGD PMID:16054028 MGI:MGI:3588909 NCBI chr17:43,050,282...43,339,403
Ensembl chr17:43,050,789...43,339,403
JBrowse link
G Cd2ap CD2-associated protein ISO (PMID:10339567) RGD PMID:10339567 NCBI chr 9:20,794,680...20,858,438
Ensembl chr 9:20,765,296...20,858,504
JBrowse link
G Dpysl3 dihydropyrimidinase-like 3 IDA PMID:16181627 UniProt PMID:16181627 RGD:8553533 NCBI chr18:37,716,371...37,819,347
Ensembl chr18:37,716,143...37,819,097
JBrowse link
G Dusp22 dual specificity phosphatase 22 ISO (PMID:20018849) RGD PMID:20018849 NCBI chr17:34,986,589...35,037,297
Ensembl chr17:34,986,591...35,037,076
JBrowse link
G Ehbp1 EH domain binding protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:106,871,426...107,160,224
Ensembl chr14:106,871,430...107,160,334
JBrowse link
G Ehbp1l1 EH domain binding protein 1-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:221,061,878...221,084,423
Ensembl chr 1:221,062,147...221,084,129
JBrowse link
G Espn espin IDA PMID:8799813 UniProt PMID:8799813 RGD:632658 NCBI chr 5:169,293,356...169,331,338
Ensembl chr 5:169,293,904...169,331,163
JBrowse link
G Jam3 junctional adhesion molecule 3 ISO (PMID:19060272) RGD PMID:19060272 NCBI chr 8:28,147,110...28,208,466
Ensembl chr 8:28,147,111...28,208,466
JBrowse link
G Kptn kaptin (actin binding protein) colocalizes_with ISO
IBA
(PMID:24239382)
PMID:21873635
RGD PMID:24239382, PMID:21873635 RGD:13792537 NCBI chr 1:78,015,714...78,016,508
Ensembl chr 1:78,015,722...78,023,676
JBrowse link
G Ldb3 LIM domain binding 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:10,878,348...10,943,016
Ensembl chr16:10,878,334...10,941,501
JBrowse link
G LOC103690128 smoothelin-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:80,678,919...80,682,296
Ensembl chr14:80,678,467...80,680,738
JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 ISO (MGI:MGI:5608927|PMID:25224220) RGD PMID:25224220 MGI:MGI:5608927 NCBI chr 2:43,329,516...43,393,203
Ensembl chr 2:43,329,516...43,393,207
JBrowse link
G Micalcl MICAL C-terminal like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:177,183,436...177,232,674
Ensembl chr 1:177,183,209...177,232,691
JBrowse link
G Myo18b myosin XVIIIb ISO (MGI:MGI:3821523|PMID:18761673) RGD PMID:18761673 MGI:MGI:3821523 NCBI chr12:49,761,100...49,979,745
Ensembl chr12:49,761,120...49,979,758
JBrowse link
G Myo1a myosin IA IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:9858156)
Ensembl
UniProt
RGD
PMID:9858156 GO_REF:0000024, GO_REF:0000107 NCBI chr 7:71,000,299...71,019,386
Ensembl chr 7:71,004,417...71,019,372
JBrowse link
G Myo1c myosin 1C ISO (PMID:9858156) RGD PMID:9858156 NCBI chr10:63,803,311...63,819,614
Ensembl chr10:63,803,309...63,819,614
JBrowse link
G Myo1f myosin IF ISO (MGI:MGI:3664353|PMID:17023661) RGD PMID:17023661 MGI:MGI:3664353 NCBI chr 7:18,440,742...18,491,448
Ensembl chr 7:18,440,742...18,491,448
JBrowse link
G Myo3a myosin IIIA ISO (PMID:12672820) RGD PMID:12672820 NCBI chr17:88,952,635...89,167,538
Ensembl chr17:88,963,981...89,167,018
JBrowse link
G Myo6 myosin VI ISO (PMID:9852149)
(PMID:10519557)
RGD PMID:9852149, PMID:10519557 NCBI chr 8:87,583,649...87,731,271
Ensembl chr 8:87,630,916...87,731,269
JBrowse link
G Nckap1 NCK-associated protein 1 ISO (MGI:MGI:5897521|PMID:27927633) RGD PMID:27927633 MGI:MGI:5897521 NCBI chr 3:67,725,180...67,804,680
Ensembl chr 3:67,725,947...67,787,990
JBrowse link
G Pdlim1 PDZ and LIM domain 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:259,308,326...259,357,006
Ensembl chr 1:259,308,296...259,357,056
JBrowse link
G Pdlim2 PDZ and LIM domain 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:51,843,562...51,856,785
Ensembl chr15:51,843,564...51,855,325
JBrowse link
G Pdlim3 PDZ and LIM domain 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:49,543,140...49,574,362
Ensembl chr16:49,543,142...49,574,390
JBrowse link
G Pdlim4 PDZ and LIM domain 4 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:10826496)
Ensembl
RGD
PMID:10826496, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr10:39,390,578...39,405,322
Ensembl chr10:39,390,581...39,405,311
JBrowse link
G Pdlim5 PDZ and LIM domain 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:247,815,214...247,989,198
Ensembl chr 2:247,818,243...247,988,462
JBrowse link
G Pdlim7 PDZ and LIM domain 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:9,653,510...9,668,715
Ensembl chr17:9,653,561...9,668,712
JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel colocalizes_with ISO (PMID:16025301) RGD PMID:16025301 NCBI chr14:6,602,004...6,645,257
Ensembl chr14:6,602,004...6,645,257
JBrowse link
G Prickle4 prickle planar cell polarity protein 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:15,306,901...15,313,047
Ensembl chr 9:15,309,127...15,313,025
JBrowse link
G Rac3 Rac family small GTPase 3 ISO (PMID:16525025) RGD PMID:16525025 NCBI chr10:109,903,920...109,906,596
Ensembl chr10:109,904,259...109,906,232
JBrowse link
G Smtn smoothelin IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:83,755,141...83,776,871
Ensembl chr14:83,755,142...83,776,863
JBrowse link
G Smtnl1 smoothelin-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:72,207,150...72,219,209
Ensembl chr 3:72,207,113...72,219,246
JBrowse link
G Smtnl2 smoothelin-like 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:58,951,845...58,973,020
Ensembl chr10:58,951,842...58,973,020
JBrowse link
G Specc1 sperm antigen with calponin homology and coiled-coil domains 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:48,240,291...48,542,171
Ensembl chr10:48,240,127...48,542,292
JBrowse link
G Specc1l sperm antigen with calponin homology and coiled-coil domains 1-like ISO
IBA
(MGI:MGI:5433266|PMID:21703590)
PMID:21873635
RGD PMID:21703590, PMID:21873635 MGI:MGI:5433266, RGD:13792537 NCBI chr20:14,287,470...14,393,879
Ensembl chr20:14,287,457...14,393,793
JBrowse link
G Tmsb15b2 thymosin beta 15B2 ISO (MGI:MGI:3843053|PMID:19233202) RGD PMID:19233202 MGI:MGI:3843053 NCBI chr  X:107,612,518...107,614,632
Ensembl chr  X:107,612,518...107,614,632
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20610
    cellular anatomical entity 20359
      supramolecular complex 1263
        supramolecular polymer 941
          supramolecular fiber 934
            polymeric cytoskeletal fiber 699
              actin filament 136
                actin filament branch point 1
                actin filament of cell cortex of cell tip 0
                actomyosin contractile ring actin filament 0
                filamentous actin 39
Path 2
Term Annotations click to browse term
  cellular_component 20610
    cellular anatomical entity 20359
      organelle 13271
        non-membrane-bounded organelle 5195
          intracellular non-membrane-bounded organelle 5178
            cytoskeleton 2175
              actin cytoskeleton 516
                actin filament 136
                  actin filament branch point 1
                  actin filament of cell cortex of cell tip 0
                  actomyosin contractile ring actin filament 0
                  filamentous actin 39
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.