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ONTOLOGY REPORT - ANNOTATIONS

Term:mRNA cleavage factor complex
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Accession:GO:0005849 term browser browse the term
Definition:Any macromolecular complex involved in cleavage or polyadenylation of mRNA molecules.


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mRNA cleavage factor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 part_of IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr 2:13,282,157...13,285,208
Ensembl chr 2:13,282,164...13,285,162 		JBrowse link
G CPSF6 cleavage and polyadenylation specific factor 6 located_in
part_of		 ISO
IEA		 (PMID:21295486) ComplexPortal
Ensembl		 PMID:21295486 GO_REF:0000107 NCBI chr 5:33,525,668...33,559,941
Ensembl chr 5:33,525,689...33,555,226 		JBrowse link
G CPSF7 cleavage and polyadenylation specific factor 7 located_in
part_of		 ISO
IEA		 (PMID:20695905) ComplexPortal
Ensembl		 PMID:20695905 GO_REF:0000107 NCBI chr 2:10,087,581...10,112,929
Ensembl chr 2:10,087,632...10,115,076 		JBrowse link
G NUDT21 nudix hydrolase 21 located_in
part_of		 ISO
IEA		 (PMID:20695905), (PMID:21295486) ComplexPortal
UniProt
InterPro
TreeGrafter		 PMID:20695905 PMID:21295486 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr 6:29,339,893...29,359,596
Ensembl chr 6:29,339,841...29,363,312 		JBrowse link
G PCF11 PCF11 cleavage and polyadenylation factor subunit part_of IEA
IBA		 InterPro
TreeGrafter
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr 9:17,297,867...17,324,721
Ensembl chr 9:17,297,861...17,324,710 		JBrowse link
mRNA cleavage and polyadenylation specificity factor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CPSF1 cleavage and polyadenylation specific factor 1 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 4:382,887...393,732 JBrowse link
G CPSF2 cleavage and polyadenylation specific factor 2 part_of IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:113,659,903...113,690,524
Ensembl chr 7:113,659,905...113,693,764 		JBrowse link
G CPSF3 cleavage and polyadenylation specific factor 3 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:126,868,519...126,905,699
Ensembl chr 3:126,868,467...126,905,746 		JBrowse link
G CPSF4 cleavage and polyadenylation specific factor 4 part_of IEA
IBA		 Ensembl
TreeGrafter
GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:6,374,346...6,388,662
Ensembl chr 3:6,374,341...6,388,661 		JBrowse link
G CPSF6 cleavage and polyadenylation specific factor 6 part_of IEA
IBA		 Ensembl
GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:33,525,668...33,559,941
Ensembl chr 5:33,525,689...33,555,226 		JBrowse link
G CPSF7 cleavage and polyadenylation specific factor 7 part_of IEA
IBA		 Ensembl
GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:10,087,581...10,112,929
Ensembl chr 2:10,087,632...10,115,076 		JBrowse link
G CSNK1A1 casein kinase 1 alpha 1 part_of
located_in		 IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:150,612,845...150,662,431
Ensembl chr 2:150,612,077...150,662,284 		JBrowse link
G CSTF2 cleavage stimulation factor subunit 2 part_of IEA
IBA		 Ensembl
GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:82,508,739...82,540,861
Ensembl chr  X:82,508,736...82,540,863 		JBrowse link
G CSTF2T cleavage stimulation factor subunit 2 tau variant part_of IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr14:98,104,957...98,109,479
Ensembl chr14:98,105,772...98,110,358 		JBrowse link
G FIP1L1 factor interacting with PAPOLA and CPSF1 part_of IEA
IBA		 Ensembl
TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:40,157,263...40,235,084 JBrowse link
G LOC100524945 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 pseudogene part_of IBA GO_Central GO_REF:0000033 NCBI chr 9:5,971,366...5,971,953 JBrowse link
G NUDT21 nudix hydrolase 21 part_of ISO (PMID:23187700) UniProt PMID:23187700 NCBI chr 6:29,339,893...29,359,596
Ensembl chr 6:29,339,841...29,363,312 		JBrowse link
G PIP5K1A phosphatidylinositol-4-phosphate 5-kinase type 1 alpha part_of
located_in		 IEA
ISO		 (PMID:18305108) Ensembl
UniProt		 PMID:18305108 GO_REF:0000107 NCBI chr 4:98,012,941...98,062,166
Ensembl chr 4:98,012,945...98,056,815 		JBrowse link
G SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase part_of IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 6:63,728,318...63,757,460
Ensembl chr 6:63,728,325...63,755,163 		JBrowse link
G SYMPK symplekin scaffold protein part_of IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 6:52,135,580...52,180,382
Ensembl chr 6:52,138,204...52,199,220 		JBrowse link
G TUT1 terminal uridylyl transferase 1, U6 snRNA-specific part_of
located_in		 IEA
ISO		 (PMID:18305108) Ensembl
UniProt		 PMID:18305108 GO_REF:0000107 NCBI chr 2:9,148,563...9,161,918
Ensembl chr 2:9,148,560...9,161,905 		JBrowse link
G WDR33 WD repeat domain 33 part_of IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr15:59,519,832...59,639,050
Ensembl chr15:59,520,065...59,638,879 		JBrowse link
G ZC3H3 zinc finger CCCH-type containing 3 part_of IEA Ensembl GO_REF:0000107 NCBI chr 4:1,009,927...1,084,133
Ensembl chr 4:1,010,638...1,089,738 		JBrowse link
mRNA cleavage stimulating factor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CSTF1 cleavage stimulation factor subunit 1 part_of IEA
IBA		 InterPro
TreeGrafter
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr17:56,972,202...56,984,065
Ensembl chr17:56,972,248...56,985,813 		JBrowse link
G CSTF3 cleavage stimulation factor subunit 3 part_of IEA Ensembl GO_REF:0000107 NCBI chr 2:27,769,457...27,850,382
Ensembl chr 2:27,769,421...27,850,382 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18685
    protein-containing complex 6006
      nuclear protein-containing complex 1244
        mRNA cleavage factor complex 22
          mRNA cleavage and polyadenylation specificity factor complex 18
          mRNA cleavage stimulating factor complex 2
Path 2
Term Annotations click to browse term
  cellular_component 18685
    cellular anatomical entity 18463
      organelle 12421
        membrane-bounded organelle 11396
          intracellular membrane-bounded organelle 10852
            nucleus 6842
              nuclear protein-containing complex 1244
                mRNA cleavage factor complex 22
                  mRNA cleavage and polyadenylation specificity factor complex 18
                  mRNA cleavage stimulating factor complex 2
paths to the root