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ONTOLOGY REPORT - ANNOTATIONS


Term:endoplasmic reticulum-Golgi intermediate compartment
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Accession:GO:0005793 term browser browse the term
Definition:A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi and Golgi-to-ER transport.
Synonyms:exact_synonym: EGTC;   ER-Golgi intermediate compartment;   ER-Golgi transport container;   ERGIC;   VTC;   endoplasmic reticulum-Golgi transport container;   pre-Golgi intermediate compartment;   vesicular-tubular cluster
 xref: Wikipedia:Vesicular-tubular_cluster


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endoplasmic reticulum-Golgi intermediate compartment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Anpep alanyl (membrane) aminopeptidase JBrowse link 7 79,821,803 79,848,210 RGD:2290270
G Car4 carbonic anhydrase 4 JBrowse link 11 84,957,754 84,966,054 RGD:2290270
G Ccdc115 coiled-coil domain containing 115 JBrowse link 1 34,436,670 34,439,672 RGD:2290270
G Cln8 CLN8 transmembrane ER and ERGIC protein JBrowse link 8 14,881,335 14,901,720 RGD:2290270
G Cnih4 cornichon family AMPA receptor auxiliary protein 4 JBrowse link 1 181,150,366 181,168,994 RGD:2290270
G Copg1 coatomer protein complex, subunit gamma 1 JBrowse link 6 87,887,819 87,913,595 RGD:2290270
G Copg2 coatomer protein complex, subunit gamma 2 JBrowse link 6 30,747,554 30,896,815 RGD:2290270
G Dicer1 dicer 1, ribonuclease type III JBrowse link 12 104,687,740 104,751,968 RGD:2290270
G Ergic1 endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 JBrowse link 17 26,560,762 26,656,934 RGD:2290270
G Erp44 endoplasmic reticulum protein 44 JBrowse link 4 48,190,711 48,279,635 RGD:2290270
G Fn1 fibronectin 1 JBrowse link 1 71,585,473 71,653,280 RGD:2290270
G Ftcd formiminotransferase cyclodeaminase JBrowse link 10 76,575,648 76,590,338 RGD:2290270
G Gbf1 golgi-specific brefeldin A-resistance factor 1 JBrowse link 19 46,152,509 46,286,510 RGD:2290270
G Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 JBrowse link 14 45,376,421 45,388,987 RGD:2290270
G Golga3 golgi autoantigen, golgin subfamily a, 3 JBrowse link 5 110,176,857 110,226,470 RGD:2290270
G Golgb1 golgi autoantigen, golgin subfamily b, macrogolgin 1 JBrowse link 16 36,875,093 36,933,085 RGD:2290270
G Hspa5 heat shock protein 5 JBrowse link 2 34,772,090 34,776,529 RGD:2290270
G Ist1 increased sodium tolerance 1 homolog (yeast) JBrowse link 8 109,671,321 109,693,297 RGD:2290270
G Kdelr1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 JBrowse link 7 45,872,840 45,883,726 RGD:2290270
G Lman1 lectin, mannose-binding, 1 JBrowse link 18 65,980,739 66,002,635 RGD:2290270
G Lman1l lectin, mannose-binding 1 like JBrowse link 9 57,607,033 57,620,774 RGD:2290270
G Lman2 lectin, mannose-binding 2 JBrowse link 13 55,343,833 55,362,783 RGD:2290270
G Lman2l lectin, mannose-binding 2-like JBrowse link 1 36,418,900 36,445,271 RGD:2290270
G Lrpap1 low density lipoprotein receptor-related protein associated protein 1 JBrowse link 5 35,091,490 35,105,699 RGD:2290270
G Man1a mannosidase 1, alpha JBrowse link 10 53,904,785 54,076,616 RGD:2290270
G Mgat4a mannoside acetylglucosaminyltransferase 4, isoenzyme A JBrowse link 1 37,439,340 37,541,060 RGD:2290270
G Mgat4b mannoside acetylglucosaminyltransferase 4, isoenzyme B JBrowse link 11 50,225,335 50,235,103 RGD:2290270
G Mgat4d MGAT4 family, member C JBrowse link 8 83,348,472 83,379,402 RGD:2290270
G Mppe1 metallophosphoesterase 1 JBrowse link 18 67,225,043 67,245,830 RGD:2290270
G Nat8 N-acetyltransferase 8 (GCN5-related) JBrowse link 6 85,830,387 85,836,857 RGD:2290270
G Nat8b-ps N-acetyltransferase 8B, pseudogene JBrowse link 6 85,932,557 85,933,382 RGD:9068941
G Nat8f1 N-acetyltransferase 8 (GCN5-related) family member 1 JBrowse link 6 85,910,154 85,915,914 RGD:2290270
G Nucb1 nucleobindin 1 JBrowse link 7 45,492,674 45,510,408 RGD:2290270
G Nucb2 nucleobindin 2 JBrowse link 7 116,504,352 116,540,588 RGD:2290270
G P4hb prolyl 4-hydroxylase, beta polypeptide JBrowse link 11 120,560,298 120,573,253 RGD:2290270
G Pdia6 protein disulfide isomerase associated 6 JBrowse link 12 17,266,589 17,284,785 RGD:2290270
G Prom1 prominin 1 JBrowse link 5 43,993,621 44,102,047 RGD:2290270
G Ptpn2 protein tyrosine phosphatase, non-receptor type 2 JBrowse link 18 67,665,501 67,724,632 RGD:2290270
G Rab1b RAB1B, member RAS oncogene family JBrowse link 19 5,099,207 5,106,996 RGD:2290270
G Rab37 RAB37, member RAS oncogene family JBrowse link 11 115,091,331 115,162,773 RGD:2290270
G Rer1 retention in endoplasmic reticulum sorting receptor 1 JBrowse link 4 155,074,109 155,086,371 RGD:2290270
G Rgmb repulsive guidance molecule family member B JBrowse link 17 15,804,661 15,831,246 RGD:2290270
G Scyl1 SCY1-like 1 (S. cerevisiae) JBrowse link 19 5,758,422 5,771,419 RGD:2290270
G Sec22b SEC22 homolog B, vesicle trafficking protein JBrowse link 3 97,901,227 97,922,318 RGD:2290270
G Serpinh1 serine (or cysteine) peptidase inhibitor, clade H, member 1 JBrowse link 7 99,345,375 99,353,239 RGD:2290270
G Slc35c2 solute carrier family 35, member C2 JBrowse link 2 165,276,522 165,287,888 RGD:2290270
G Stx17 syntaxin 17 JBrowse link 4 48,124,906 48,186,507 RGD:2290270
G Surf4 surfeit gene 4 JBrowse link 2 26,920,041 26,933,776 RGD:2290270
G Ticam2 toll-like receptor adaptor molecule 2 JBrowse link 18 46,558,231 46,574,533 RGD:2290270
G Tmed1 transmembrane p24 trafficking protein 1 JBrowse link 9 21,507,380 21,510,234 RGD:2290270
G Tmed10 transmembrane p24 trafficking protein 10 JBrowse link 12 85,340,614 85,374,717 RGD:2290270
G Tmed11 transmembrane p24 trafficking protein 11 JBrowse link 5 108,777,235 108,795,363 RGD:2290270
G Tmed2 transmembrane p24 trafficking protein 2 JBrowse link 5 124,540,791 124,550,503 RGD:2290270
G Tmed3 transmembrane p24 trafficking protein 3 JBrowse link 9 89,699,203 89,705,043 RGD:2290270
G Tmed4 transmembrane p24 trafficking protein 4 JBrowse link 11 6,270,714 6,274,837 RGD:2290270
G Tmed5 transmembrane p24 trafficking protein 5 JBrowse link 5 108,121,556 108,132,620 RGD:2290270
G Tmed6 transmembrane p24 trafficking protein 6 JBrowse link 8 107,061,484 107,065,644 RGD:2290270
G Tmed7 transmembrane p24 trafficking protein 7 JBrowse link 18 46,585,928 46,597,535 RGD:2290270
G Tmed9 transmembrane p24 trafficking protein 9 JBrowse link 13 55,593,135 55,597,697 RGD:2290270
G Trappc12 trafficking protein particle complex 12 JBrowse link 12 28,690,620 28,750,485 RGD:2290270
G Trip11 thyroid hormone receptor interactor 11 JBrowse link 12 101,834,045 101,913,171 RGD:2290270
G Uggt1 UDP-glucose glycoprotein glucosyltransferase 1 JBrowse link 1 36,140,028 36,244,320 RGD:2290270
G Yif1a Yip1 interacting factor homolog A (S. cerevisiae) JBrowse link 19 5,088,538 5,092,879 RGD:2290270
G Yif1b Yip1 interacting factor homolog B (S. cerevisiae) JBrowse link 7 29,237,594 29,247,532 RGD:2290270
endoplasmic reticulum-Golgi intermediate compartment membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Azin2 antizyme inhibitor 2 JBrowse link 4 128,930,233 128,962,456 RGD:2290270
G Lamp5 lysosomal-associated membrane protein family, member 5 JBrowse link 2 136,052,025 136,069,917 RGD:2290270
G Nat8 N-acetyltransferase 8 (GCN5-related) JBrowse link 6 85,830,387 85,836,857 RGD:2290270
G Nat8b-ps N-acetyltransferase 8B, pseudogene JBrowse link 6 85,932,557 85,933,382 RGD:9068941
G Nat8f1 N-acetyltransferase 8 (GCN5-related) family member 1 JBrowse link 6 85,910,154 85,915,914 RGD:2290270
G Plpp3 phospholipid phosphatase 3 JBrowse link 4 105,157,347 105,232,767 RGD:2290270
G Sppl3 signal peptide peptidase 3 JBrowse link 5 115,011,524 115,098,790 RGD:2290270
G Tm6sf2 transmembrane 6 superfamily member 2 JBrowse link 8 70,072,924 70,080,066 RGD:2290270
G Tmem199 transmembrane protein 199 JBrowse link 11 78,507,055 78,512,168 RGD:2290270
G Whamm WAS protein homolog associated with actin, golgi membranes and microtubules JBrowse link 7 81,570,655 81,596,837 RGD:2290270
integral component of endoplasmic reticulum-Golgi intermediate compartment (ERGIC) membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sting1 stimulator of interferon response cGAMP interactor 1 JBrowse link 18 35,733,678 35,740,554 RGD:2290270
TRAPPI protein complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trappc5 trafficking protein particle complex 5 JBrowse link 8 3,676,477 3,680,921 RGD:2290270

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 23077
    cellular anatomical entity 18808
      cytoplasm 11196
        endoplasmic reticulum-Golgi intermediate compartment 73
          TRAPPI protein complex 1
          endoplasmic reticulum-Golgi intermediate compartment membrane + 11
Path 2
Term Annotations click to browse term
  cellular_component 23077
    cellular anatomical entity 18808
      organelle 12634
        membrane-bounded organelle 11384
          intracellular membrane-bounded organelle 10614
            endoplasmic reticulum-Golgi intermediate compartment 73
              TRAPPI protein complex 1
              endoplasmic reticulum-Golgi intermediate compartment membrane + 11
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.