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ONTOLOGY REPORT - ANNOTATIONS


Term:endoplasmic reticulum-Golgi intermediate compartment
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Accession:GO:0005793 term browser browse the term
Definition:A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi and Golgi-to-ER transport.
Synonyms:exact_synonym: EGTC;   ER-Golgi intermediate compartment;   ER-Golgi transport container;   ERGIC;   VTC;   endoplasmic reticulum-Golgi transport container;   pre-Golgi intermediate compartment;   vesicular-tubular cluster
 xref: Wikipedia:Vesicular-tubular_cluster


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endoplasmic reticulum-Golgi intermediate compartment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ANPEP alanyl aminopeptidase, membrane JBrowse link 15 68,479,349 68,509,238 RGD:9068941
G CA4 carbonic anhydrase 4 JBrowse link 17 54,236,114 54,258,638 RGD:9068941
G CCDC115 coiled-coil domain containing 115 JBrowse link 2B 28,624,800 28,629,543 RGD:9068941
G CLN8 CLN8 transmembrane ER and ERGIC protein JBrowse link 8 5,587,875 5,606,883 RGD:9068941
G CNIH4 cornichon family AMPA receptor auxiliary protein 4 JBrowse link 1 199,825,889 199,848,664 RGD:9068941
G DICER1 dicer 1, ribonuclease III JBrowse link 14 75,709,029 75,780,779 RGD:9068941
G ERGIC1 endoplasmic reticulum-golgi intermediate compartment 1 JBrowse link 5 168,187,760 168,305,675 RGD:9068941
G ERP44 endoplasmic reticulum protein 44 JBrowse link 9 71,062,078 71,185,195 RGD:9068941
G FN1 fibronectin 1 JBrowse link 2B 102,623,568 102,698,747 RGD:9068941
G FTCD formimidoyltransferase cyclodeaminase JBrowse link 21 32,481,042 32,501,932 RGD:9068941
G GBF1 golgi brefeldin A resistant guanine nucleotide exchange factor 1 JBrowse link 10 98,849,000 98,986,443 RGD:9068941
G GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 JBrowse link 14 33,371,603 33,388,098 RGD:9068941
G GOLGB1 golgin B1 JBrowse link 3 118,765,467 118,852,005 RGD:9068941
G HSPA5 heat shock protein family A (Hsp70) member 5 JBrowse link 9 96,351,645 96,356,761 RGD:9068941
G IST1 IST1 factor associated with ESCRT-III JBrowse link 16 53,082,530 53,115,965 RGD:9068941
G KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 JBrowse link 19 45,382,456 45,391,338 RGD:9068941
G LMAN1 lectin, mannose binding 1 JBrowse link 18 52,722,735 52,754,013 RGD:9068941
G LMAN2 lectin, mannose binding 2 JBrowse link 5 172,619,011 172,653,303 RGD:9068941
G LOC100967542 golgin subfamily A member 3 JBrowse link 12 130,134,892 130,189,944 RGD:9068941
G LOC100971190 putative N-acetyltransferase 8B JBrowse link 2A 73,761,907 73,763,964 RGD:9068941
G LRPAP1 LDL receptor related protein associated protein 1 JBrowse link 4 3,663,649 3,683,450 RGD:9068941
G MAN1A1 mannosidase alpha class 1A member 1 JBrowse link 6 116,984,842 117,157,623 RGD:9068941
G MGAT4D MGAT4 family member D JBrowse link 4 132,804,533 132,861,460 RGD:9068941
G NAT8 N-acetyltransferase 8 (putative) JBrowse link 2A 73,702,173 73,703,763 RGD:9068941
G NUCB1 nucleobindin 1 JBrowse link 19 45,900,098 45,923,056 RGD:9068941
G NUCB2 nucleobindin 2 JBrowse link 11 17,331,742 17,404,682 RGD:9068941
G P4HB prolyl 4-hydroxylase subunit beta JBrowse link 17 76,248,252 76,266,152 RGD:9068941
G PDIA6 protein disulfide isomerase family A member 6 JBrowse link 2A 10,781,671 10,809,235 RGD:9068941
G PROM1 prominin 1 JBrowse link 4 10,405,299 10,519,518 RGD:9068941
G PTPN2 protein tyrosine phosphatase non-receptor type 2 JBrowse link 18 1,440,837 1,538,501 RGD:9068941
G RAB1B RAB1B, member RAS oncogene family JBrowse link 11 61,634,017 61,642,945 RGD:9068941
G RAB37 RAB37, member RAS oncogene family JBrowse link 17 68,614,362 68,693,196 RGD:9068941
G RGMB repulsive guidance molecule BMP co-receptor b JBrowse link 5 94,080,200 94,107,441 RGD:9068941
G SCYL1 SCY1 like pseudokinase 1 JBrowse link 11 60,884,136 60,897,790 RGD:9068941
G SEC22B SEC22 homolog B, vesicle trafficking protein JBrowse link 1 82,383,313 82,404,612 RGD:9068941
G SERPINH1 serpin family H member 1 JBrowse link 11 70,621,893 70,632,570 RGD:9068941
G SLC35C2 solute carrier family 35 member C2 JBrowse link 20 42,686,735 42,701,321 RGD:9068941
G STX17 syntaxin 17 JBrowse link 9 70,989,913 71,058,374 RGD:9068941
G SURF4 surfeit 4 JBrowse link 9 104,484,792 104,499,508 RGD:9068941
G TMED1 transmembrane p24 trafficking protein 1 JBrowse link 19 10,386,041 10,389,905 RGD:9068941
G TMED10 transmembrane p24 trafficking protein 10 JBrowse link 14 55,683,121 55,728,365 RGD:9068941
G TMED2 transmembrane p24 trafficking protein 2 JBrowse link 12 121,169,915 121,183,524 RGD:9068941
G TMED3 transmembrane p24 trafficking protein 3 JBrowse link 15 58,280,282 58,355,677 RGD:9068941
G TMED5 transmembrane p24 trafficking protein 5 JBrowse link 1 95,821,324 95,850,099 RGD:9068941
G TMED7 transmembrane p24 trafficking protein 7 JBrowse link 5 110,970,162 110,983,414 RGD:9068941
G TMED9 transmembrane p24 trafficking protein 9 JBrowse link 5 172,897,814 172,901,789 RGD:9068941
G TRAPPC12 trafficking protein particle complex 12 JBrowse link 2A 3,388,191 3,490,496 RGD:9068941
G TRIP11 thyroid hormone receptor interactor 11 JBrowse link 14 72,601,649 72,675,784 RGD:9068941
G UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 JBrowse link 2B 32,071,319 32,178,207 RGD:9068941
G YIF1A Yip1 interacting factor homolog A, membrane trafficking protein JBrowse link 11 61,650,020 61,656,674 RGD:9068941
G YIF1B Yip1 interacting factor homolog B, membrane trafficking protein JBrowse link 19 35,396,685 35,407,665 RGD:9068941
endoplasmic reticulum-Golgi intermediate compartment membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AZIN2 antizyme inhibitor 2 JBrowse link 1 32,365,430 32,404,880 RGD:9068941
G LAMP5 lysosomal associated membrane protein family member 5 JBrowse link 20 9,487,971 9,503,912 RGD:9068941
G LOC100971190 putative N-acetyltransferase 8B JBrowse link 2A 73,761,907 73,763,964 RGD:9068941
G NAT8 N-acetyltransferase 8 (putative) JBrowse link 2A 73,702,173 73,703,763 RGD:9068941
G PLPP3 phospholipid phosphatase 3 JBrowse link 1 55,779,343 55,862,717 RGD:9068941
G SPPL3 signal peptide peptidase like 3 JBrowse link 12 118,351,199 118,489,579 RGD:9068941
G TM6SF2 transmembrane 6 superfamily member 2 JBrowse link 19 18,703,075 18,712,056 RGD:9068941
G TMEM199 transmembrane protein 199 JBrowse link 17 28,412,229 28,416,840 RGD:9068941
G WHAMM WASP homolog associated with actin, golgi membranes and microtubules JBrowse link 15 62,763,534 62,788,639 RGD:9068941
integral component of endoplasmic reticulum-Golgi intermediate compartment (ERGIC) membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G STING1 stimulator of interferon response cGAMP interactor 1 JBrowse link 5 134,845,689 134,852,938 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 12608
    cellular anatomical entity 12425
      cytoplasm 8101
        endoplasmic reticulum-Golgi intermediate compartment 59
          TRAPPI protein complex 0
          endoplasmic reticulum-Golgi intermediate compartment membrane + 10
Path 2
Term Annotations click to browse term
  cellular_component 12608
    cellular anatomical entity 12425
      organelle 9687
        membrane-bounded organelle 8601
          intracellular membrane-bounded organelle 7856
            endoplasmic reticulum-Golgi intermediate compartment 59
              TRAPPI protein complex 0
              endoplasmic reticulum-Golgi intermediate compartment membrane + 10
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.