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ONTOLOGY REPORT - ANNOTATIONS


Term:rough endoplasmic reticulum
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Accession:GO:0005791 term browser browse the term
Definition:The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae.
Synonyms:exact_synonym: RER;   rough ER
 xref: NIF_Subcellular:sao1881364067;   Wikipedia:Endoplasmic_reticulum#Rough_endoplasmic_reticulum


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rough endoplasmic reticulum term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07006691.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:248,428,099...248,463,139 JBrowse link
G AABR07034315.1 IEA GO_REF:0000044 UniProt GO_REF:0000044 Ensembl chr11:64,472,072...64,472,479 JBrowse link
G AABR07070594.1 IEA GO_REF:0000044 UniProt GO_REF:0000044 Ensembl chr 8:76,239,585...76,239,995 JBrowse link
G AABR07070689.2 IEA GO_REF:0000044 UniProt GO_REF:0000044 Ensembl chr 8:80,662,762...80,663,172 JBrowse link
G AABR07071482.2 IEA GO_REF:0000044 UniProt GO_REF:0000044 Ensembl chr 8:118,378,029...118,378,460 JBrowse link
G AABR07072400.1 IEA GO_REF:0000044 UniProt GO_REF:0000044 Ensembl chr14:43,694,183...43,694,611 JBrowse link
G AC141489.1 IEA GO_REF:0000044 UniProt GO_REF:0000044 Ensembl chr 5:159,606,647...159,606,989 JBrowse link
G Ache acetylcholinesterase IDA hepatocytes RGD PMID:2731551 RGD:2301205 NCBI chr12:22,472,358...22,477,052
Ensembl chr12:22,472,358...22,478,753
JBrowse link
G Adcyap1r1 ADCYAP receptor type I IDA RGD PMID:9464636 RGD:2315987 NCBI chr 4:85,662,809...85,711,696
Ensembl chr 4:85,662,892...85,711,696
JBrowse link
G App amyloid beta precursor protein IDA RGD PMID:8097074 RGD:10054252 NCBI chr11:24,425,013...24,641,872
Ensembl chr11:24,425,005...24,641,858
JBrowse link
G Aqp2 aquaporin 2 IDA RGD PMID:15905145 RGD:1581707 NCBI chr 7:141,237,802...141,242,837
Ensembl chr 7:141,237,768...141,245,165
JBrowse link
G Arsb arylsulfatase B IDA RGD PMID:7419898 RGD:1599233 NCBI chr 2:23,385,154...23,543,028
Ensembl chr 2:23,385,183...23,544,963
JBrowse link
G Baiap2 BAR/IMD domain containing adaptor protein 2 IDA RGD PMID:24639075 RGD:11576288 NCBI chr10:109,107,326...109,187,458
Ensembl chr10:109,107,389...109,187,115
JBrowse link
G Bglap bone gamma-carboxyglutamate protein IDA RGD PMID:3111671 RGD:2316179 NCBI chr 2:187,741,770...187,748,445
Ensembl chr 2:187,741,770...187,742,747
JBrowse link
G Ca4 carbonic anhydrase 4 ISO
IEA
(PMID:17409381)
GO_REF:0000107
RGD
Ensembl
PMID:17409381 GO_REF:0000107 NCBI chr10:72,272,286...72,281,069
Ensembl chr10:72,272,248...72,281,067
JBrowse link
G Canx calnexin colocalizes_with IDA RGD PMID:1331857 RGD:2313162 NCBI chr10:35,800,942...35,833,939
Ensembl chr10:35,800,942...35,833,861
JBrowse link
G Ccdc47 coiled-coil domain containing 47 ISO (MGI:5605216|PMID:25009997) RGD PMID:25009997 MGI:5605216 NCBI chr10:94,388,425...94,406,949
Ensembl chr10:94,388,430...94,406,949
JBrowse link
G Ccl2 C-C motif chemokine ligand 2 IDA RGD PMID:12080327 RGD:8549739 NCBI chr10:69,412,065...69,413,863
Ensembl chr10:69,412,017...69,413,870
JBrowse link
G Cdkal1 CDK5 regulatory subunit associated protein 1-like 1 ISO (MGI:5297757|PMID:21841312) RGD PMID:21841312 MGI:5297757 NCBI chr17:36,451,031...37,157,882
Ensembl chr17:36,451,058...37,295,069
JBrowse link
G Cel carboxyl ester lipase IDA RGD PMID:9701565 RGD:2313571 NCBI chr 3:7,134,021...7,141,522
Ensembl chr 3:7,134,021...7,141,522
JBrowse link
G Ckap4 cytoskeleton-associated protein 4 ISO
IBA
(PMID:24454821)
PMID:21873635
RGD PMID:24454821, PMID:21873635 RGD:13792537 NCBI chr 7:24,935,243...24,947,595
Ensembl chr 7:24,939,498...24,947,595
JBrowse link
G Clock clock circadian regulator IDA RGD PMID:16208722 RGD:10401943 NCBI chr14:34,418,226...34,502,218
Ensembl chr14:34,446,616...34,502,218
JBrowse link
G Crhr2 corticotropin releasing hormone receptor 2 IDA RGD PMID:16820012 RGD:5131267 NCBI chr 4:85,286,371...85,329,374
Ensembl chr 4:85,286,372...85,329,362
JBrowse link
G Cybb cytochrome b-245 beta chain IDA RGD PMID:17027166 RGD:1599676 NCBI chr  X:14,578,330...14,610,049
Ensembl chr  X:14,578,264...14,612,547
JBrowse link
G Epha5 EPH receptor A5 ISO (PMID:10375373) RGD PMID:10375373 NCBI chr14:25,589,312...25,958,258
Ensembl chr14:25,589,762...25,958,227
JBrowse link
G F12 coagulation factor XII IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:9,736,577...9,744,420
Ensembl chr17:9,736,577...9,744,420
JBrowse link
G Fga fibrinogen alpha chain IDA RGD PMID:19954227 RGD:5688770 NCBI chr 2:181,997,562...182,013,726
Ensembl chr 2:182,006,242...182,013,763
JBrowse link
G Fkrp fukutin related protein ISO (PMID:15213246) RGD PMID:15213246 NCBI chr 1:78,733,461...78,740,803
Ensembl chr 1:78,733,508...78,739,107
JBrowse link
G Fmr1 FMRP translational regulator 1 IDA RGD PMID:9030614 RGD:11041080 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
G Glul glutamate-ammonia ligase IDA RGD PMID:1363168, PMID:31966 RGD:2301551, RGD:2301552 NCBI chr13:71,331,052...71,340,207
Ensembl chr13:71,331,052...71,340,229
JBrowse link
G Grm7 glutamate metabotropic receptor 7 IDA RGD PMID:9300765 RGD:1643599 NCBI chr 4:142,452,616...143,368,460
Ensembl chr 4:142,780,987...143,367,578
JBrowse link
G Hcrt hypocretin neuropeptide precursor IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:88,669,216...88,670,430
Ensembl chr10:88,669,214...88,670,430
JBrowse link
G Hgfac HGF activator ISO
IBA
(MGI:2673754|PMID:12923239)
PMID:21873635
RGD PMID:12923239, PMID:21873635 MGI:2673754, RGD:13792537 NCBI chr14:80,966,902...80,973,525
Ensembl chr14:80,966,903...80,973,456
JBrowse link
G Hm13 histocompatibility minor 13 ISO (PMID:15998642), (PMID:16829952) RGD PMID:15998642 PMID:16829952 NCBI chr 3:148,150,695...148,189,623
Ensembl chr 3:148,150,698...148,189,623
JBrowse link
G Hsd11b1 hydroxysteroid 11-beta dehydrogenase 1 IDA RGD PMID:11250946 RGD:1625110 NCBI chr13:111,946,626...111,996,536
Ensembl chr13:111,926,442...111,972,603
JBrowse link
G Hspd1 heat shock protein family D (Hsp60) member 1 IDA RGD PMID:10806118, PMID:8675995 RGD:1625123, RGD:2298714 NCBI chr 9:61,680,529...61,691,202
Ensembl chr 9:61,680,530...61,690,956
JBrowse link
G Htr5a 5-hydroxytryptamine receptor 5A IDA RGD PMID:17394137 RGD:2316992 NCBI chr 4:199,916...209,599
Ensembl chr 4:199,916...209,599
JBrowse link
G Htr7 5-hydroxytryptamine receptor 7 IDA RGD PMID:16082681 RGD:6480682 NCBI chr 1:254,547,964...254,671,811
Ensembl chr 1:254,547,620...254,671,778
JBrowse link
G Kcnj2 potassium inwardly-rectifying channel, subfamily J, member 2 IDA RGD PMID:18076085 RGD:7247433 NCBI chr10:99,429,337...99,442,520
Ensembl chr10:99,437,436...99,439,114
JBrowse link
G Lin28a lin-28 homolog A ISO (MGI:5795814|PMID:23102813) RGD PMID:23102813 MGI:5795814 NCBI chr 5:152,230,343...152,247,873
Ensembl chr 5:152,230,343...152,247,332
JBrowse link
G LOC100912027 60S ribosomal protein L27-like IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:76,239,585...76,240,022 JBrowse link
G LOC108350501 40S ribosomal protein S29 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:147,490,388...147,490,712
Ensembl chr 3:147,490,496...147,490,666
Ensembl chr13:147,490,496...147,490,666
Ensembl chr 7:147,490,496...147,490,666
JBrowse link
G LOC108351482 40S ribosomal protein S29 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:76,980,025...76,980,338
Ensembl chr 3:147,490,496...147,490,666
Ensembl chr13:147,490,496...147,490,666
Ensembl chr 7:147,490,496...147,490,666
JBrowse link
G LOC108352650 40S ribosomal protein S29 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:91,333,998...91,334,323
Ensembl chr 6:91,455,333...91,456,696
Ensembl chr 3:91,455,333...91,456,696
Ensembl chr 7:91,455,333...91,456,696
JBrowse link
G Lrat lecithin retinol acyltransferase IDA RGD PMID:18544127 RGD:6893660 NCBI chr 2:181,896,304...181,905,366
Ensembl chr 2:181,896,305...181,905,300
JBrowse link
G Lrpap1 LDL receptor related protein associated protein 1 IDA RGD PMID:7522607 RGD:10412055 NCBI chr14:80,911,281...80,923,290
Ensembl chr14:80,911,270...80,924,831
JBrowse link
G Map2 microtubule-associated protein 2 IDA RGD PMID:15623521 RGD:1625439 NCBI chr 9:73,204,753...73,462,965
Ensembl chr 9:73,319,710...73,462,972
JBrowse link
G Mpz myelin protein zero IDA RGD PMID:8789946 RGD:9685789 NCBI chr13:89,524,204...89,530,070
Ensembl chr13:89,524,329...89,530,068
JBrowse link
G Mt3 metallothionein 3 IDA RGD PMID:8911664 RGD:9685810 NCBI chr19:11,324,708...11,326,112
Ensembl chr19:11,324,698...11,326,139
JBrowse link
G Mta1 metastasis associated 1 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:137,911,302...137,950,066
Ensembl chr 6:137,924,293...137,950,075
JBrowse link
G Mttp microsomal triglyceride transfer protein IDA RGD PMID:11830580 RGD:1582567 NCBI chr 2:243,366,181...243,407,608
Ensembl chr 2:243,366,181...243,407,608
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO (PMID:18816594) RGD PMID:18816594 NCBI chr 7:102,586,313...102,591,240
Ensembl chr 7:102,586,313...102,591,240
JBrowse link
G Myoc myocilin IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:80,517,531...80,527,928
Ensembl chr13:80,517,536...80,527,928
JBrowse link
G Ncf1 neutrophil cytosolic factor 1 IDA RGD PMID:17027166 RGD:1599676 NCBI chr12:25,497,104...25,506,300
Ensembl chr12:25,497,104...25,506,300
JBrowse link
G Ncoa2 nuclear receptor coactivator 2 IDA RGD PMID:15912503 RGD:2326122 NCBI chr 5:5,466,544...5,696,540
Ensembl chr 5:5,616,483...5,694,598
JBrowse link
G Ngfr nerve growth factor receptor IDA Purkinje cells following traumatic axotomy RGD PMID:9521535 RGD:5508789 NCBI chr10:83,389,828...83,408,061
Ensembl chr10:83,389,847...83,408,061
JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 IDA RGD PMID:16626872 RGD:8655644 NCBI chr17:5,934,651...6,245,778
Ensembl chr17:5,933,729...6,244,676
JBrowse link
G Nucb1 nucleobindin 1 IDA RGD PMID:15193541 RGD:9831129 NCBI chr 1:101,480,160...101,511,029
Ensembl chr 1:101,480,145...101,500,850
JBrowse link
G P2rx3 purinergic receptor P2X 3 IDA RGD PMID:9721930 RGD:1642677 NCBI chr 3:72,403,992...72,447,801
Ensembl chr 3:72,403,993...72,447,801
JBrowse link
G Pcsk1 proprotein convertase subtilisin/kexin type 1 IDA RGD PMID:9405499 RGD:2308915 NCBI chr 2:91,450,162...91,497,091
Ensembl chr 2:91,450,162...91,497,091
JBrowse link
G Pcsk9 proprotein convertase subtilisin/kexin type 9 IDA RGD PMID:16462892 RGD:1582517 NCBI chr 5:126,031,368...126,053,726
Ensembl chr 5:126,031,368...126,053,726
JBrowse link
G Pebp1 phosphatidylethanolamine binding protein 1 IDA RGD PMID:11428049 RGD:2302814 NCBI chr12:45,026,948...45,031,148
Ensembl chr12:45,026,886...45,031,145
JBrowse link
G Pkm pyruvate kinase M1/2 ISS
ISO
GO_REF:0000024
(MGI:6331015|PMID:28575669)
UniProt
RGD
PMID:28575669 GO_REF:0000024 MGI:6331015 NCBI chr 8:64,480,963...64,502,957
Ensembl chr 8:64,481,172...64,502,722
JBrowse link
G Pkm_v1 pyruvate kinase M1/2, variant 1 ISS GO_REF:0000024 UniProt GO_REF:0000024
G Pkm_v2 pyruvate kinase M1/2, variant 2 ISS GO_REF:0000024 UniProt GO_REF:0000024
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:22,716,421...22,726,982
Ensembl chr12:22,716,423...22,726,982
JBrowse link
G Psen1 presenilin 1 ISO (PMID:9632714) RGD PMID:9632714 NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798
JBrowse link
G Ptgds prostaglandin D2 synthase ISO
ISS
(PMID:9065498)
GO_REF:0000024
RGD
UniProt
PMID:9065498 GO_REF:0000024 NCBI chr 3:2,686,125...2,689,059
Ensembl chr 3:2,686,123...2,689,084
JBrowse link
G Rab14 RAB14, member RAS oncogene family IDA PMID:15004230 UniProt PMID:15004230 RGD:8554557 NCBI chr 3:14,373,270...14,395,357
Ensembl chr 3:14,373,275...14,395,362
JBrowse link
G Rangrf RAN guanine nucleotide release factor ISO (PMID:23420830) RGD PMID:23420830 NCBI chr10:55,559,049...55,560,420
Ensembl chr10:55,559,041...55,560,422
JBrowse link
G RGD1563570 similar to ribosomal protein S23 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:43,685,899...43,694,618 JBrowse link
G RGD1563705 similar to ribosomal protein S23 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:118,377,978...118,378,487 JBrowse link
G RGD1563835 similar to ribosomal protein L27 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr11:64,472,028...64,472,507 JBrowse link
G RGD1565900 similar to ribosomal protein L27 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:80,662,735...80,663,172 JBrowse link
G Rpl18 ribosomal protein L18 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:101,700,910...101,703,551
Ensembl chr 1:101,701,975...101,703,550
JBrowse link
G Rpl4 ribosomal protein L4 IEA
ISO
GO_REF:0000107
(PMID:24454821)
Ensembl
RGD
PMID:24454821 GO_REF:0000107 NCBI chr 8:69,121,682...69,126,805
Ensembl chr 8:69,121,682...69,126,805
JBrowse link
G Rpl6 ribosomal protein L6 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:40,877,578...40,882,032
Ensembl chr12:40,877,613...40,881,124
JBrowse link
G Rpn1 ribophorin I IDA
ISO
IEA
(MGI:5605216|PMID:25009997)
GO_REF:0000107
RGD
Ensembl
PMID:25009997, PMID:15623521 GO_REF:0000107 MGI:5605216, RGD:1625439 NCBI chr 4:119,997,232...120,018,687
Ensembl chr 4:119,997,268...120,018,679
JBrowse link
G Rpn2 ribophorin II IDA RGD PMID:15623521, PMID:7673362 RGD:1625439, RGD:2325967 NCBI chr 3:153,398,373...153,445,633
Ensembl chr 3:153,398,130...153,445,632
JBrowse link
G Rps21 ribosomal protein S21 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:175,629,176...175,630,198
Ensembl chr 3:175,629,374...175,630,048
JBrowse link
G Rps21-ps1 ribosomal protein S21, pseudogene 1 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:159,606,647...159,606,990 JBrowse link
G Rps23 ribosomal protein S23 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:19,823,234...19,824,804
Ensembl chr 2:19,823,234...19,824,804
JBrowse link
G Rps29 ribosomal protein S29 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:91,455,333...91,456,709
Ensembl chr 6:91,455,333...91,456,696
Ensembl chr 3:91,455,333...91,456,696
Ensembl chr 7:91,455,333...91,456,696
JBrowse link
G Scgb1a1 secretoglobin family 1A member 1 IDA RGD PMID:8333547 RGD:5144115 NCBI chr 1:225,279,698...225,283,246
Ensembl chr 1:225,279,676...225,283,326
JBrowse link
G Sec61a1 SEC61 translocon subunit alpha 1 IDA RGD PMID:1423609 RGD:68306 NCBI chr 4:120,453,577...120,467,932
Ensembl chr 4:120,453,581...120,467,932
JBrowse link
G Sftpa1 surfactant protein A1 IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:16187065, PMID:21873635 RGD:4143471, RGD:13792537 NCBI chr16:18,716,019...18,719,404
Ensembl chr16:18,716,019...18,719,403
JBrowse link
G Sftpd surfactant protein D IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:16187065, PMID:21873635 RGD:4143471, RGD:13792537 NCBI chr16:18,753,535...18,766,100
Ensembl chr16:18,745,458...18,766,174
JBrowse link
G Slc7a11 solute carrier family 7 member 11 IDA RGD PMID:17401668 RGD:2315030 NCBI chr 2:139,453,774...139,528,479
Ensembl chr 2:139,453,774...139,528,162
JBrowse link
G Snca synuclein alpha IDA RGD PMID:11810180 RGD:6218996 NCBI chr 4:90,782,412...90,883,236
Ensembl chr 4:90,782,374...90,882,285
JBrowse link
G Sppl3 signal peptide peptidase like 3 ISO (PMID:15998642) RGD PMID:15998642 NCBI chr12:47,276,485...47,360,552
Ensembl chr12:47,276,476...47,360,507
JBrowse link
G Stx17 syntaxin 17 NOT ISO (PMID:10930465) RGD PMID:10930465 NCBI chr 5:63,866,346...63,926,276
Ensembl chr 5:63,870,432...63,922,730
JBrowse link
G Suco SUN domain containing ossification factor IEA
ISO
ISS
GO_REF:0000107
(MGI:4452525|PMID:20440000)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:20440000 GO_REF:0000024 GO_REF:0000107 MGI:4452525 NCBI chr13:79,736,485...79,801,133
Ensembl chr13:79,736,482...79,801,561
JBrowse link
G Tmcc1 transmembrane and coiled-coil domain family 1 ISO (PMID:24454821) RGD PMID:24454821 NCBI chr 4:147,920,987...148,048,852
Ensembl chr 4:147,921,724...148,048,726
JBrowse link
G Tmem97 transmembrane protein 97 ISO
ISS
(PMID:19583955)
GO_REF:0000024
RGD
UniProt
PMID:19583955 GO_REF:0000024 NCBI chr10:65,811,455...65,820,538
Ensembl chr10:65,811,456...65,820,538
JBrowse link
G Tp63 tumor protein p63 IDA RGD PMID:15623521 RGD:1625439 NCBI chr11:78,234,853...78,456,559
Ensembl chr11:78,234,800...78,456,501
JBrowse link
G Vdac3 voltage-dependent anion channel 3 IDA RGD PMID:15623521 RGD:1625439 NCBI chr16:74,292,466...74,308,910
Ensembl chr16:74,292,438...74,308,903
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A ISS
ISO
GO_REF:0000024
(MGI:5706859|PMID:26000482), (MGI:5751631|PMID:26255671)
UniProt
RGD
PMID:26000482 PMID:26255671 GO_REF:0000024 MGI:5706859 MGI:5751631 NCBI chr 5:143,111,342...143,120,131
Ensembl chr 5:143,111,074...143,120,165
JBrowse link
cytoplasmic side of rough endoplasmic reticulum membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epm2a EPM2A glucan phosphatase, laforin ISO
ISS
(PMID:11001928)
GO_REF:0000024
RGD
UniProt
PMID:11001928 GO_REF:0000024 NCBI chr 1:5,448,958...5,571,512
Ensembl chr 1:5,448,958...5,571,512
JBrowse link
G Gnrh1 gonadotropin releasing hormone 1 IDA gonadotropin-releasing hormone-associated peptide RGD PMID:2183089 RGD:9685146 NCBI chr15:44,441,856...44,446,064
Ensembl chr15:44,442,555...44,442,875
Ensembl chr15:44,442,555...44,442,875
JBrowse link
G LOC100360508 ribosomal protein S26-like ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr13:45,079,857...45,080,277 JBrowse link
G Mgat2 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 6:91,476,698...91,479,187
Ensembl chr 6:91,476,698...91,479,183
JBrowse link
G Rpl10 ribosomal protein L10 ISO (PMID:24930395) RGD PMID:24930395 NCBI chr  X:156,438,251...156,440,461
Ensembl chr  X:156,438,251...156,440,461
JBrowse link
G Rpl11 ribosomal protein L11 ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 5:154,390,809...154,394,412
Ensembl chr 5:154,388,140...154,394,328
JBrowse link
G Rpl22 ribosomal protein L22 ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 5:169,506,150...169,512,875
Ensembl chr 5:169,506,138...169,512,871
JBrowse link
G Rpl23 ribosomal protein L23 ISO (PMID:24930395) RGD PMID:24930395 NCBI chr10:85,721,398...85,725,359
Ensembl chr10:85,721,394...85,725,429
JBrowse link
G Rpl27 ribosomal protein L27 ISS
ISO
GO_REF:0000024
(PMID:24930395)
UniProt
RGD
PMID:24930395 GO_REF:0000024 NCBI chr10:89,352,864...89,356,563
Ensembl chr10:89,352,835...89,356,547
JBrowse link
G Rpl29 ribosomal protein L29 ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 8:115,131,228...115,133,401
Ensembl chr 8:115,131,367...115,133,401
JBrowse link
G Rpl31 ribosomal protein L31 ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 9:46,086,959...46,090,444
Ensembl chr 9:46,086,984...46,090,997
JBrowse link
G Rpl32 ribosomal protein L32 ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 4:147,715,480...147,719,044
Ensembl chr 6:145,777,318...145,777,767
Ensembl chr 4:145,777,318...145,777,767
JBrowse link
G Rpl35 ribosomal protein L35 ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 3:23,294,813...23,297,774
Ensembl chr 3:23,294,814...23,297,774
JBrowse link
G Rps17 ribosomal protein S17 ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 1:143,167,329...143,169,915
Ensembl chr 1:143,167,362...143,169,657
JBrowse link
G Rps18 ribosomal protein S18 ISO (PMID:24930395) RGD PMID:24930395 NCBI chr20:5,441,875...5,445,553
Ensembl chr20:5,441,876...5,445,553
JBrowse link
G Rps20 ribosomal protein S20 ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 5:16,706,052...16,707,214
Ensembl chr 5:16,706,082...16,706,909
JBrowse link
G Rps21-ps1 ribosomal protein S21, pseudogene 1 ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 5:159,606,647...159,606,990 JBrowse link
G Rps23 ribosomal protein S23 ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 2:19,823,234...19,824,804
Ensembl chr 2:19,823,234...19,824,804
JBrowse link
G Rps26 ribosomal protein S26 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 7:3,052,112...3,053,662 JBrowse link
G Rps28 ribosomal protein S28 ISS
ISO
GO_REF:0000024
(PMID:24930395)
UniProt
RGD
PMID:24930395 GO_REF:0000024 NCBI chr 7:18,682,071...18,683,440
Ensembl chr 7:18,682,071...18,683,440
JBrowse link
G Rps29 ribosomal protein S29 ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 6:91,455,333...91,456,709
Ensembl chr 6:91,455,333...91,456,696
Ensembl chr 3:91,455,333...91,456,696
Ensembl chr 7:91,455,333...91,456,696
JBrowse link
G Rps3 ribosomal protein S3 ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 1:164,435,868...164,441,167
Ensembl chr 1:164,435,878...164,441,167
JBrowse link
G Rpsa ribosomal protein SA ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 8:128,806,053...128,809,987
Ensembl chr 8:128,806,129...128,809,986
JBrowse link
endoplasmic reticulum Sec complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec61b SEC61 translocon subunit beta IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:63,192,322...63,200,532
Ensembl chr 5:63,192,298...63,200,508
JBrowse link
rough endoplasmic reticulum lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase ISO RGD RGD:11560526 NCBI chr12:22,472,358...22,477,052
Ensembl chr12:22,472,358...22,478,753
JBrowse link
G Edn1 endothelin 1 IDA RGD PMID:10903535 RGD:8662311 NCBI chr17:22,136,814...22,143,745
Ensembl chr17:22,137,324...22,143,324
JBrowse link
G Lrpap1 LDL receptor related protein associated protein 1 IDA
IBA
ISO
PMID:21873635
(PMID:7774585)
RGD PMID:7774585, PMID:8223699, PMID:21873635 RGD:1641935, RGD:13792537 NCBI chr14:80,911,281...80,923,290
Ensembl chr14:80,911,270...80,924,831
JBrowse link
G Lyz2 lysozyme 2 IDA RGD PMID:9208328 RGD:1599861 NCBI chr 7:60,335,968...60,341,264
Ensembl chr 7:60,335,969...60,341,264
JBrowse link
G Resp18 regulated endocrine-specific protein 18 IDA RGD PMID:8132649 RGD:69957 NCBI chr 9:82,470,794...82,477,136
Ensembl chr 9:82,470,759...82,477,181
JBrowse link
G Vtn vitronectin IDA RGD PMID:10192552 RGD:10003091 NCBI chr10:65,767,960...65,771,040
Ensembl chr10:65,767,053...65,771,038
JBrowse link
rough endoplasmic reticulum membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldob aldolase, fructose-bisphosphate B IDA RGD PMID:234468 RGD:2313431 NCBI chr 5:64,805,772...64,818,813
Ensembl chr 5:64,805,773...64,818,824
JBrowse link
G Ccdc47 coiled-coil domain containing 47 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:94,388,425...94,406,949
Ensembl chr10:94,388,430...94,406,949
JBrowse link
G Maco1 macoilin 1 ISO
IBA
ISS
(PMID:21589894)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:21589894, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:153,122,780...153,184,940
Ensembl chr 5:153,122,781...153,184,940
JBrowse link
G Nat8l N-acetyltransferase 8-like IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:82,041,616...82,048,251
Ensembl chr14:82,041,616...82,048,251
JBrowse link
G Pi4kb phosphatidylinositol 4-kinase beta IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:196,139,724...196,172,055
Ensembl chr 2:196,139,755...196,171,713
JBrowse link
G Plod1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:164,720,629...164,747,071
Ensembl chr 5:164,720,587...164,747,083
JBrowse link
G Plod2 procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:99,977,334...100,059,736
Ensembl chr 8:99,977,334...100,059,736
JBrowse link
G Rho rhodopsin IDA RGD PMID:2525480 RGD:6893558 NCBI chr 4:147,832,136...147,837,298
Ensembl chr 4:147,832,136...147,837,298
JBrowse link
G Suco SUN domain containing ossification factor IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:79,736,485...79,801,133
Ensembl chr13:79,736,482...79,801,561
JBrowse link
G Tmem97 transmembrane protein 97 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:65,811,455...65,820,538
Ensembl chr10:65,811,456...65,820,538
JBrowse link
G Uba1 ubiquitin-like modifier activating enzyme 1 colocalizes_with ISO (PMID:1376922) RGD PMID:1376922 NCBI chr  X:1,723,135...1,745,147
Ensembl chr  X:1,723,174...1,741,701
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:143,111,342...143,120,131
Ensembl chr 5:143,111,074...143,120,165
JBrowse link
Sec61 translocon complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl6ip1 ADP-ribosylation factor like GTPase 6 interacting protein 1 ISO
IBA
(MGI:1858942|PMID:10508919)
PMID:21873635
RGD PMID:10508919, PMID:21873635 MGI:1858942, RGD:13792537 NCBI chr 1:187,770,160...187,779,675
Ensembl chr 1:187,770,160...187,779,675
JBrowse link
G Sec61a1 SEC61 translocon subunit alpha 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:120,453,577...120,467,932
Ensembl chr 4:120,453,581...120,467,932
JBrowse link
G Sec61a2 SEC61 translocon subunit alpha 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:76,358,947...76,385,860
Ensembl chr17:76,358,944...76,385,103
JBrowse link
G Sec61b SEC61 translocon subunit beta IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 5:63,192,322...63,200,532
Ensembl chr 5:63,192,298...63,200,508
JBrowse link
G Ssr3 signal sequence receptor subunit 3 NAS RGD PMID:7916687 RGD:61758 NCBI chr 2:156,010,997...156,023,853
Ensembl chr 2:156,011,002...156,014,527
JBrowse link
G Ssr4 signal sequence receptor subunit 4 IDA RGD PMID:7916687 RGD:61758 NCBI chr  X:156,995,763...156,999,702
Ensembl chr  X:156,995,779...156,999,650
JBrowse link
Sec62/Sec63 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec63 SEC63 homolog, protein translocation regulator IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:47,494,270...47,563,222
Ensembl chr20:47,494,270...47,563,222
JBrowse link
signal recognition particle receptor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Derl1 derlin 1 colocalizes_with ISO (PMID:26565908) RGD PMID:26565908 NCBI chr 7:97,737,176...97,759,852
Ensembl chr 7:97,737,178...97,759,852
JBrowse link
G Derl2 derlin 2 colocalizes_with ISO (PMID:26565908) RGD PMID:26565908 NCBI chr10:57,641,682...57,653,554
Ensembl chr10:57,644,207...57,653,359
JBrowse link
G Derl3 derlin 3 colocalizes_with ISO (PMID:26565908) RGD PMID:26565908 NCBI chr20:13,692,102...13,707,645
Ensembl chr20:13,704,314...13,706,205
JBrowse link
G Rp9 RP9, pre-mRNA splicing factor colocalizes_with ISO
IBA
(MGI:3688359|PMID:15652350)
PMID:21873635
RGD PMID:15652350, PMID:21873635 MGI:3688359, RGD:13792537 NCBI chr 8:23,450,111...23,482,939
Ensembl chr 8:23,450,111...23,482,939
JBrowse link
G Srpra SRP receptor subunit alpha IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:36,410,683...36,416,766
Ensembl chr 8:36,410,683...36,416,296
JBrowse link
G Srprb SRP receptor subunit beta IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:111,673,479...111,687,426 JBrowse link
Ssh1 translocon complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07028668.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:79,829,305...79,829,511 JBrowse link
G AABR07041141.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:120,521,665...120,521,871 JBrowse link
G AABR07048012.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:56,751,657...56,753,832 JBrowse link
G AABR07048013.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:56,769,347...56,771,522 JBrowse link
G LOC100362376 LRRGT00025-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:120,521,595...120,521,921 JBrowse link
G LOC108348617 protein transport protein Sec61 subunit gamma pseudogene IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:79,829,305...79,829,511 JBrowse link
G LOC499136 LRRGT00021 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:97,783,806...97,785,490
Ensembl chr 1:97,783,806...97,785,490
JBrowse link
G Sec61g SEC61 translocon subunit gamma IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:99,774,589...99,780,964
Ensembl chr14:99,774,589...99,780,964
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20615
    cellular anatomical entity 20304
      endomembrane system 4012
        endoplasmic reticulum 1760
          rough endoplasmic reticulum 149
            rough endoplasmic reticulum lumen 6
            rough endoplasmic reticulum membrane + 56
Path 2
Term Annotations click to browse term
  cellular_component 20615
    cellular anatomical entity 20304
      organelle 13278
        membrane-bounded organelle 11263
          intracellular membrane-bounded organelle 10518
            endoplasmic reticulum 1760
              rough endoplasmic reticulum 149
                rough endoplasmic reticulum lumen 6
                rough endoplasmic reticulum membrane + 56
paths to the root