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ONTOLOGY REPORT - ANNOTATIONS


Term:rough endoplasmic reticulum
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Accession:GO:0005791 term browser browse the term
Definition:The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae.
Synonyms:exact_synonym: RER;   rough ER
 xref: NIF_Subcellular:sao1881364067;   Wikipedia:Endoplasmic_reticulum#Rough_endoplasmic_reticulum



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rough endoplasmic reticulum term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07070594.1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044
G AABR07070689.2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044
G AC141489.1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 Ensembl chr 5:153,387,176...153,387,427 JBrowse link
G Ache acetylcholinesterase IDA hepatocytes RGD PMID:2731551 RGD:2301205 NCBI chr12:19,407,359...19,413,713
Ensembl chr12:19,407,360...19,413,651
JBrowse link
G Adcyap1r1 ADCYAP receptor type I IDA RGD PMID:9464636 RGD:2315987 NCBI chr 4:84,593,558...84,642,700
Ensembl chr 4:84,593,892...84,642,700
JBrowse link
G App amyloid beta precursor protein IDA RGD PMID:8097074 RGD:10054252 NCBI chr11:24,019,774...24,236,584
Ensembl chr11:24,019,778...24,236,561
JBrowse link
G Aqp2 aquaporin 2 IDA RGD PMID:15905145 RGD:1581707 NCBI chr 7:130,711,433...130,716,468
Ensembl chr 7:130,711,413...130,716,468
JBrowse link
G Arsb arylsulfatase B IDA RGD PMID:7419898 RGD:1599233 NCBI chr 2:25,002,210...25,162,675
Ensembl chr 2:25,002,346...25,162,671
JBrowse link
G Baiap2 BAR/IMD domain containing adaptor protein 2 IDA RGD PMID:24639075 RGD:11576288 NCBI chr10:105,223,065...105,290,130
Ensembl chr10:105,223,090...105,290,134
JBrowse link
G Bglap bone gamma-carboxyglutamate protein IDA RGD PMID:3111671 RGD:2316179 NCBI chr 2:173,838,518...173,839,495
Ensembl chr 2:173,838,518...173,839,495
JBrowse link
G Canx calnexin colocalizes_with IDA RGD PMID:1331857 RGD:2313162 NCBI chr10:34,623,865...34,656,866
Ensembl chr10:34,625,191...34,656,821
JBrowse link
G Car4 carbonic anhydrase 4 located_in ISO (PMID:17409381) RGD PMID:17409381 NCBI chr10:69,827,945...69,836,501
Ensembl chr10:69,827,945...69,836,501
JBrowse link
G Ccdc47 coiled-coil domain containing 47 located_in ISO (MGI:5605216|PMID:25009997) RGD PMID:25009997 MGI:5605216 NCBI chr10:91,130,303...91,148,829
Ensembl chr10:91,130,303...91,148,881
JBrowse link
G Ccl2 C-C motif chemokine ligand 2 IDA RGD PMID:12080327 RGD:8549739 NCBI chr10:67,005,424...67,007,222
Ensembl chr10:67,005,424...67,007,226
JBrowse link
G Cdkal1 CDK5 regulatory subunit associated protein 1-like 1 located_in ISO (MGI:5297757|PMID:21841312) RGD PMID:21841312 MGI:5297757 NCBI chr17:34,718,680...34,769,614
NCBI chr17:34,852,238...35,271,276
Ensembl chr17:34,718,687...35,407,524
JBrowse link
G Cel carboxyl ester lipase IDA RGD PMID:9701565 RGD:2313571 NCBI chr 3:11,883,532...11,891,035
Ensembl chr 3:11,883,532...11,891,035
JBrowse link
G Ckap4 cytoskeleton-associated protein 4 located_in
is_active_in
ISO
IBA
(PMID:24454821)
PMID:21873635
RGD PMID:24454821 PMID:21873635 RGD:13792537 NCBI chr 7:19,230,814...19,238,914
Ensembl chr 7:19,230,203...19,238,914
JBrowse link
G Clock clock circadian regulator IDA RGD PMID:16208722 RGD:10401943 NCBI chr14:31,908,542...31,992,673
Ensembl chr14:31,908,566...31,990,400
JBrowse link
G Crhr2 corticotropin releasing hormone receptor 2 IDA RGD PMID:16820012 RGD:5131267 NCBI chr 4:84,222,897...84,265,924
Ensembl chr 4:84,224,002...84,265,904
JBrowse link
G Cybb cytochrome b-245 beta chain IDA RGD PMID:17027166 RGD:1599676 NCBI chr  X:13,360,583...13,392,517
Ensembl chr  X:13,359,430...13,392,586
JBrowse link
G Epha5 EPH receptor A5 located_in ISO (PMID:10375373) RGD PMID:10375373 NCBI chr14:23,653,393...24,020,135
Ensembl chr14:23,653,393...24,017,317
JBrowse link
G F12 coagulation factor XII is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:9,207,683...9,215,530
Ensembl chr17:9,207,683...9,215,530
JBrowse link
G Fga fibrinogen alpha chain IDA RGD PMID:19954227 RGD:5688770 NCBI chr 2:168,365,364...168,381,533
Ensembl chr 2:168,374,120...168,381,528
JBrowse link
G Fkrp fukutin related protein located_in ISO (PMID:15213246) RGD PMID:15213246 NCBI chr 1:77,479,641...77,486,954
Ensembl chr 1:77,476,084...77,486,992
JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 IDA RGD PMID:9030614 RGD:11041080 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050
JBrowse link
G Glul glutamate-ammonia ligase IDA RGD PMID:1363168 PMID:31966 RGD:2301551, RGD:2301552 NCBI chr13:65,969,064...66,035,121
Ensembl chr13:66,025,630...66,035,108
JBrowse link
G Grm7 glutamate metabotropic receptor 7 IDA RGD PMID:9300765 RGD:1643599 NCBI chr 4:143,730,862...144,613,230
Ensembl chr 4:143,731,259...144,612,344
JBrowse link
G Hcrt hypocretin neuropeptide precursor located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:85,689,992...85,691,206
Ensembl chr10:85,689,465...85,691,210
JBrowse link
G Hgfac HGF activator located_in ISO (MGI:2673754|PMID:12923239) RGD PMID:12923239 MGI:2673754 NCBI chr14:75,707,588...75,714,182
Ensembl chr14:75,707,591...75,714,278
JBrowse link
G Hm13 histocompatibility minor 13 located_in ISO (PMID:15998642), (PMID:16829952) RGD PMID:15998642 PMID:16829952 NCBI chr 3:141,145,769...141,184,703
Ensembl chr 3:141,145,782...141,184,703
JBrowse link
G Hsd11b1 hydroxysteroid 11-beta dehydrogenase 1 IDA RGD PMID:11250946 RGD:1625110 NCBI chr13:104,728,539...104,798,884
Ensembl chr13:104,728,539...104,788,687
JBrowse link
G Hspd1 heat shock protein family D (Hsp60) member 1 IDA RGD PMID:10806118 PMID:8675995 RGD:1625123, RGD:2298714 NCBI chr 9:56,579,195...56,590,011
Ensembl chr 9:56,579,201...56,589,662
JBrowse link
G Htr5a 5-hydroxytryptamine receptor 5A IDA RGD PMID:17394137 RGD:2316992 NCBI chr 4:7,444,968...7,454,651
Ensembl chr 4:7,444,968...7,454,651
JBrowse link
G Htr7 5-hydroxytryptamine receptor 7 IDA RGD PMID:16082681 RGD:6480682 NCBI chr 1:233,636,442...233,761,063
Ensembl chr 1:233,636,452...233,760,626
JBrowse link
G Kcnj2 potassium inwardly-rectifying channel, subfamily J, member 2 IDA RGD PMID:18076085 RGD:7247433 NCBI chr10:96,060,849...96,071,401
Ensembl chr10:96,060,821...96,071,445
JBrowse link
G Lin28a lin-28 homolog A located_in ISO (MGI:5795814|PMID:23102813) RGD PMID:23102813 MGI:5795814 NCBI chr 5:146,227,119...146,244,122
Ensembl chr 5:146,227,119...146,244,122
JBrowse link
G LOC100912027 60S ribosomal protein L27-like located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:74,704,046...74,704,469
Ensembl chr 8:74,704,059...74,704,469
JBrowse link
G LOC108350501 40S ribosomal protein S29 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:140,488,241...140,488,613
Ensembl chr13:85,284,636...85,284,968
Ensembl chr 6:85,284,636...85,284,968
JBrowse link
G LOC108351482 40S ribosomal protein S29 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:69,294,762...69,295,070
Ensembl chr13:85,284,636...85,284,968
JBrowse link
G LOC108352650 40S ribosomal protein S29 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:85,284,622...85,284,968
Ensembl chr13:85,284,636...85,284,968
JBrowse link
G Lrat lecithin retinol acyltransferase is_active_in
located_in
IDA
IBA
PMID:21873635
PMID:18544127
RGD
GO_Central
UniProt
PMID:18544127 PMID:21873635 PMID:18544127 RGD:6893660, RGD:13792537, RGD:6893660 NCBI chr 2:168,264,093...168,273,155
Ensembl chr 2:168,266,877...168,273,619
JBrowse link
G Lrpap1 LDL receptor related protein associated protein 1 IDA RGD PMID:7522607 RGD:10412055 NCBI chr14:75,651,371...75,663,380
Ensembl chr14:75,651,376...75,665,414
JBrowse link
G Map2 microtubule-associated protein 2 IDA RGD PMID:15623521 RGD:1625439 NCBI chr 9:67,723,422...67,981,886
Ensembl chr 9:67,723,371...67,979,809
JBrowse link
G Mpz myelin protein zero IDA RGD PMID:8789946 RGD:9685789 NCBI chr13:83,570,811...83,576,680
Ensembl chr13:83,570,811...83,576,679
JBrowse link
G Mt3 metallothionein 3 IDA RGD PMID:8911664 RGD:9685810 NCBI chr19:10,848,754...10,850,158
Ensembl chr19:10,848,755...10,850,158
JBrowse link
G Mta1 metastasis associated 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:132,178,608...132,217,641
Ensembl chr 6:132,178,853...132,217,641
JBrowse link
G Mttp microsomal triglyceride transfer protein IDA RGD PMID:11830580 RGD:1582567 NCBI chr 2:226,613,090...226,654,239
Ensembl chr 2:226,613,090...226,654,239
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor located_in ISO (PMID:18816594) RGD PMID:18816594 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630
JBrowse link
G Myoc myocilin located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:74,976,730...74,987,128
Ensembl chr13:74,976,730...74,987,127
JBrowse link
G Ncf1 neutrophil cytosolic factor 1 IDA RGD PMID:17027166 RGD:1599676 NCBI chr12:22,485,382...22,494,647
Ensembl chr12:22,485,451...22,494,646
JBrowse link
G Ncoa2 nuclear receptor coactivator 2 IDA RGD PMID:15912503 RGD:2326122 NCBI chr 5:5,835,642...6,069,693
Ensembl chr 5:5,835,706...6,067,451
JBrowse link
G Ngfr nerve growth factor receptor IDA Purkinje cells following traumatic axotomy RGD PMID:9521535 RGD:5508789 NCBI chr10:80,515,287...80,533,518
Ensembl chr10:80,515,299...80,533,518
JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 IDA RGD PMID:16626872 RGD:8655644 NCBI chr17:5,558,992...5,870,299
Ensembl chr17:5,559,043...5,869,136
JBrowse link
G Nucb1 nucleobindin 1 IDA RGD PMID:15193541 RGD:9831129 NCBI chr 1:95,968,325...95,999,183
Ensembl chr 1:95,968,326...96,003,220
JBrowse link
G P2rx3 purinergic receptor P2X 3 IDA RGD PMID:9721930 RGD:1642677 NCBI chr 3:70,080,850...70,124,664
Ensembl chr 3:70,080,851...70,125,178
JBrowse link
G Pcsk1 proprotein convertase subtilisin/kexin type 1 IDA RGD PMID:9405499 RGD:2308915 NCBI chr 2:4,395,543...4,442,434
Ensembl chr 2:4,395,543...4,442,434
JBrowse link
G Pcsk9 proprotein convertase subtilisin/kexin type 9 IDA RGD PMID:16462892 RGD:1582517 NCBI chr 5:121,211,278...121,233,688
Ensembl chr 5:121,211,278...121,233,688
JBrowse link
G Pebp1 phosphatidylethanolamine binding protein 1 IDA RGD PMID:11428049 RGD:2302814 NCBI chr12:39,302,864...39,307,064
Ensembl chr12:39,302,840...39,307,862
JBrowse link
G Pkm pyruvate kinase M1/2 located_in ISS
ISO
GO_REF:0000024
(MGI:6331015|PMID:28575669)
UniProt
RGD
PMID:28575669 GO_REF:0000024 MGI:6331015 NCBI chr 8:60,057,629...60,079,600
Ensembl chr 8:60,057,402...60,079,599
JBrowse link
G Pkm_v1 pyruvate kinase M1/2, variant 1 located_in ISS GO_REF:0000024 UniProt GO_REF:0000024
G Pkm_v2 pyruvate kinase M1/2, variant 2 located_in ISS GO_REF:0000024 UniProt GO_REF:0000024
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:19,676,384...19,686,945
Ensembl chr12:19,676,386...19,686,960
JBrowse link
G Psen1 presenilin 1 located_in ISO (PMID:9632714) RGD PMID:9632714 NCBI chr 6:103,323,014...103,375,088
Ensembl chr 6:103,323,120...103,371,650
JBrowse link
G Ptgds prostaglandin D2 synthase located_in ISO
ISS
(PMID:9065498)
GO_REF:0000024
RGD
UniProt
PMID:9065498 GO_REF:0000024 NCBI chr 3:8,281,899...8,284,833
Ensembl chr 3:8,281,899...8,284,833
JBrowse link
G Rab14 RAB14, member RAS oncogene family located_in IDA PMID:15004230 UniProt PMID:15004230 RGD:8554557 NCBI chr 3:18,501,953...18,523,253
Ensembl chr 3:18,501,963...18,523,172
JBrowse link
G Rangrf RAN guanine nucleotide release factor located_in ISO (PMID:23420830) RGD PMID:23420830 NCBI chr10:53,677,467...53,678,880
Ensembl chr10:53,677,467...53,678,840
JBrowse link
G RGD1563835 similar to ribosomal protein L27 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr11:61,911,180...61,911,639
Ensembl chr11:61,911,204...61,911,663
JBrowse link
G Rpl18 ribosomal protein L18 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:96,188,811...96,191,452
Ensembl chr 1:96,188,112...96,191,452
JBrowse link
G Rpl4 ribosomal protein L4 located_in ISO (PMID:24454821) RGD PMID:24454821 NCBI chr 8:64,671,177...64,676,301
Ensembl chr 8:64,671,160...64,676,306
JBrowse link
G Rpl6 ribosomal protein L6 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:35,347,493...35,352,011
Ensembl chr12:35,347,497...35,351,921
JBrowse link
G Rpn1 ribophorin I located_in IDA
ISO
IEA
(MGI:5605216|PMID:25009997)
GO_REF:0000107
RGD
Ensembl
PMID:25009997 PMID:15623521 GO_REF:0000107 MGI:5605216, RGD:1625439 NCBI chr 4:120,543,667...120,565,069
Ensembl chr 4:120,543,667...120,565,069
JBrowse link
G Rpn2 ribophorin II IDA RGD PMID:15623521 PMID:7673362 RGD:1625439, RGD:2325967 NCBI chr 3:145,941,787...145,989,271
Ensembl chr 3:145,941,839...145,989,543
JBrowse link
G Rps21 ribosomal protein S21 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:167,346,437...167,347,459
Ensembl chr 3:167,346,201...167,347,470
JBrowse link
G Rps21-ps1 ribosomal protein S21, pseudogene 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:153,387,133...153,387,476
Ensembl chr 5:153,387,176...153,387,427
JBrowse link
G Rps23 ribosomal protein S23 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:22,079,339...22,080,909
Ensembl chr 2:22,079,302...22,080,918
JBrowse link
G Rps29 ribosomal protein S29 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:87,635,229...87,636,605
Ensembl chr 6:87,635,230...87,636,636
JBrowse link
G Scgb1a1 secretoglobin family 1A member 1 IDA RGD PMID:8333547 RGD:5144115 NCBI chr 1:205,977,060...205,980,610
Ensembl chr 1:205,977,060...205,980,610
JBrowse link
G Sec61a1 SEC61 translocon subunit alpha 1 IDA RGD PMID:1423609 RGD:68306 NCBI chr 4:120,973,519...120,987,871
Ensembl chr 4:120,960,626...120,987,925
JBrowse link
G Sftpa1 surfactant protein A1 is_active_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:16187065 PMID:21873635 RGD:4143471, RGD:13792537 NCBI chr16:17,008,180...17,011,686
Ensembl chr16:17,008,180...17,011,685
JBrowse link
G Sftpd surfactant protein D is_active_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:16187065 PMID:21873635 RGD:4143471, RGD:13792537 NCBI chr16:17,046,491...17,058,968
Ensembl chr16:17,046,483...17,059,927
JBrowse link
G Slc7a11 solute carrier family 7 member 11 IDA RGD PMID:17401668 RGD:2315030 NCBI chr 2:134,382,002...134,517,622
Ensembl chr 2:133,963,107...134,517,536
JBrowse link
G Snca synuclein alpha IDA RGD PMID:11810180 RGD:6218996 NCBI chr 4:89,696,420...89,797,240
Ensembl chr 4:89,696,420...89,796,262
JBrowse link
G Sppl3 signal peptide peptidase like 3 located_in ISO (PMID:15998642) RGD PMID:15998642 NCBI chr12:41,515,635...41,600,079
Ensembl chr12:41,515,640...41,600,126
JBrowse link
G Stx17 syntaxin 17 NOT|located_in ISO (PMID:10930465) RGD PMID:10930465 NCBI chr 5:62,446,138...62,506,108
Ensembl chr 5:62,446,187...62,504,451
JBrowse link
G Suco SUN domain containing ossification factor located_in ISS
ISO
IEA
GO_REF:0000024
(MGI:4452525|PMID:20440000)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:20440000 GO_REF:0000024 GO_REF:0000107 MGI:4452525 NCBI chr13:74,192,808...74,257,896
Ensembl chr13:74,193,573...74,257,896
JBrowse link
G Tmcc1 transmembrane and coiled-coil domain family 1 located_in ISO (PMID:24454821) RGD PMID:24454821 NCBI chr 4:149,069,252...149,239,585
Ensembl chr 4:149,069,260...149,239,620
JBrowse link
G Tmem97 transmembrane protein 97 located_in ISO
ISS
(PMID:19583955)
GO_REF:0000024
RGD
UniProt
PMID:19583955 GO_REF:0000024 NCBI chr10:63,438,228...63,447,311
Ensembl chr10:63,438,222...63,589,730
JBrowse link
G Tp63 tumor protein p63 IDA RGD PMID:15623521 RGD:1625439 NCBI chr11:74,838,858...75,049,764
Ensembl chr11:74,838,859...75,049,398
JBrowse link
G Vdac3 voltage-dependent anion channel 3 IDA RGD PMID:15623521 RGD:1625439 NCBI chr16:69,434,982...69,451,473
Ensembl chr16:69,435,005...69,451,471
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A located_in ISS
ISO
GO_REF:0000024
(MGI:5706859|PMID:26000482), (MGI:5751631|PMID:26255671)
UniProt
RGD
PMID:26000482 PMID:26255671 GO_REF:0000024 MGI:5706859 MGI:5751631 NCBI chr 5:137,376,562...137,385,351
Ensembl chr 5:137,376,564...137,385,351
JBrowse link
cytoplasmic side of rough endoplasmic reticulum membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epm2a EPM2A glucan phosphatase, laforin located_in ISO
ISS
(PMID:11001928)
GO_REF:0000024
RGD
UniProt
PMID:11001928 GO_REF:0000024 NCBI chr 1:5,727,111...5,845,338
Ensembl chr 1:5,727,066...5,920,555
JBrowse link
G Gnrh1 gonadotropin releasing hormone 1 IDA gonadotropin-releasing hormone-associated peptide RGD PMID:2183089 RGD:9685146 NCBI chr15:41,972,482...41,976,690
Ensembl chr15:41,972,905...41,973,581
Ensembl chr15:41,972,905...41,973,581
JBrowse link
G Icmt isoprenylcysteine carboxyl methyltransferase located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 5:162,804,368...162,811,129
Ensembl chr 5:162,804,368...162,811,128
JBrowse link
G LOC100360508 ribosomal protein S26-like located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr13:39,863,688...39,864,147 JBrowse link
G LOC100361854 ribosomal protein S26-like located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr  X:107,822,116...107,822,555
Ensembl chr  X:107,822,178...107,822,525
JBrowse link
G Mgat2 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 6:87,656,360...87,658,849
Ensembl chr 6:87,656,349...87,658,177
JBrowse link
G Rpl10 ribosomal protein L10 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr  X:152,054,547...152,056,757
Ensembl chr  X:152,054,452...152,056,761
JBrowse link
G Rpl11 ribosomal protein L11 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 5:148,274,060...148,277,708
Ensembl chr 5:148,274,069...148,277,599
JBrowse link
G Rpl22 ribosomal protein L22 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 5:162,835,251...162,841,977
Ensembl chr 5:162,833,740...162,843,368
JBrowse link
G Rpl23 ribosomal protein L23 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr10:82,771,878...82,775,840
Ensembl chr10:82,771,538...82,775,870
JBrowse link
G Rpl27 ribosomal protein L27 located_in ISS
ISO
GO_REF:0000024
(PMID:24930395)
UniProt
RGD
PMID:24930395 GO_REF:0000024 NCBI chr10:86,375,511...86,379,210
Ensembl chr10:86,375,454...86,379,193
JBrowse link
G Rpl29 ribosomal protein L29 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 8:107,068,929...107,070,963
Ensembl chr 8:107,068,480...107,070,914
JBrowse link
G Rpl31 ribosomal protein L31 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 9:41,647,401...41,650,886
Ensembl chr 9:41,647,426...41,662,129
JBrowse link
G Rpl32 ribosomal protein L32 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 4:148,864,048...148,867,612
Ensembl chr 4:148,864,044...148,867,612
JBrowse link
G Rpl35 ribosomal protein L35 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 3:22,753,255...22,756,217
Ensembl chr 3:22,753,253...22,756,243
JBrowse link
G Rpl6 ribosomal protein L6 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr12:35,347,493...35,352,011
Ensembl chr12:35,347,497...35,351,921
JBrowse link
G Rps15 ribosomal protein S15 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 7:9,416,003...9,417,442
Ensembl chr 7:9,416,004...9,417,450
JBrowse link
G Rps16 ribosomal protein S16 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 1:83,643,066...83,646,056
Ensembl chr 1:83,643,130...83,646,206
JBrowse link
G Rps17 ribosomal protein S17 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 1:135,295,920...135,298,506
Ensembl chr 1:135,295,919...135,298,535
JBrowse link
G Rps18 ribosomal protein S18 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr20:4,931,427...4,935,538
Ensembl chr10:101,204,500...101,205,146
Ensembl chr20:101,204,500...101,205,146
JBrowse link
G Rps20 ribosomal protein S20 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 5:16,819,313...16,820,475
Ensembl chr 5:16,819,304...16,820,475
JBrowse link
G Rps21-ps1 ribosomal protein S21, pseudogene 1 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 5:153,387,133...153,387,476
Ensembl chr 5:153,387,176...153,387,427
JBrowse link
G Rps23 ribosomal protein S23 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 2:22,079,339...22,080,909
Ensembl chr 2:22,079,302...22,080,918
JBrowse link
G Rps26 ribosomal protein S26 located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 7:1,057,332...1,058,882 JBrowse link
G Rps28 ribosomal protein S28 located_in ISS
ISO
GO_REF:0000024
(PMID:24930395)
UniProt
RGD
PMID:24930395 GO_REF:0000024 NCBI chr 7:14,607,801...14,609,170
Ensembl chr 7:14,607,801...14,609,170
JBrowse link
G Rps29 ribosomal protein S29 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 6:87,635,229...87,636,605
Ensembl chr 6:87,635,230...87,636,636
JBrowse link
G Rps3 ribosomal protein S3 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 1:153,778,363...153,783,663
Ensembl chr 1:153,777,472...153,783,680
JBrowse link
G Rpsa ribosomal protein SA located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 8:119,851,225...119,855,103
Ensembl chr 8:119,851,225...119,855,247
JBrowse link
G Uba52 ubiquitin A-52 residue ribosomal protein fusion product 1 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr16:18,918,614...18,920,807
Ensembl chr16:18,900,616...18,920,807
JBrowse link
rough endoplasmic reticulum lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase ISO RGD RGD:11560526 RGD:150520179 NCBI chr12:19,407,359...19,413,713
Ensembl chr12:19,407,360...19,413,651
JBrowse link
G Edn1 endothelin 1 IDA RGD PMID:10903535 RGD:8662311 NCBI chr17:22,454,924...22,460,812
Ensembl chr17:22,454,420...22,460,885
JBrowse link
G Lrpap1 LDL receptor related protein associated protein 1 is_active_in
located_in
IDA
IBA
ISO
PMID:21873635
(PMID:7774585)
RGD PMID:7774585 PMID:8223699 PMID:21873635 RGD:1641935, RGD:13792537 NCBI chr14:75,651,371...75,663,380
Ensembl chr14:75,651,376...75,665,414
JBrowse link
G Lyz2 lysozyme 2 IDA RGD PMID:9208328 RGD:1599861 NCBI chr 7:52,906,810...52,912,154
Ensembl chr 7:52,906,811...52,912,106
JBrowse link
G Resp18 regulated endocrine-specific protein 18 IDA RGD PMID:8132649 RGD:69957 NCBI chr 9:76,765,179...76,771,824
Ensembl chr 9:76,764,590...76,778,722
JBrowse link
G Vtn vitronectin IDA RGD PMID:10192552 RGD:10003091 NCBI chr10:63,394,732...63,397,812
Ensembl chr10:63,394,719...63,397,810
JBrowse link
rough endoplasmic reticulum membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldob aldolase, fructose-bisphosphate B IDA RGD PMID:234468 RGD:2313431 NCBI chr 5:63,889,045...63,902,086
Ensembl chr 5:63,889,046...63,902,116
JBrowse link
G Ccdc47 coiled-coil domain containing 47 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:91,130,303...91,148,829
Ensembl chr10:91,130,303...91,148,881
JBrowse link
G Maco1 macoilin 1 located_in
is_active_in
ISO
IBA
ISS
(PMID:21589894)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:21589894 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:147,012,416...147,075,265
Ensembl chr 5:147,012,867...147,075,001
JBrowse link
G Pi4kb phosphatidylinositol 4-kinase beta located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:182,540,377...182,572,684
Ensembl chr 2:182,540,567...182,588,488
JBrowse link
G Plod1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:158,340,674...158,367,581
Ensembl chr 5:158,340,490...158,367,620
JBrowse link
G Plod2 procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:93,084,548...93,167,255
Ensembl chr 8:93,084,513...93,167,255
JBrowse link
G Rho rhodopsin IDA RGD PMID:2525480 RGD:6893558 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
G Suco SUN domain containing ossification factor located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:74,192,808...74,257,896
Ensembl chr13:74,193,573...74,257,896
JBrowse link
G Tmem97 transmembrane protein 97 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:63,438,228...63,447,311
Ensembl chr10:63,438,222...63,589,730
JBrowse link
G Uba1 ubiquitin-like modifier activating enzyme 1 colocalizes_with ISO (PMID:1376922) RGD PMID:1376922 NCBI chr  X:1,508,700...1,530,677
Ensembl chr  X:1,508,666...1,530,636
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:137,376,562...137,385,351
Ensembl chr 5:137,376,564...137,385,351
JBrowse link
Sec61 translocon complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl6ip1 ADP-ribosylation factor like GTPase 6 interacting protein 1 part_of IBA
ISO
PMID:21873635
(MGI:1858942|PMID:10508919)
RGD PMID:10508919 PMID:21873635 MGI:1858942, RGD:13792537 NCBI chr 1:172,430,475...172,439,990
Ensembl chr 1:172,430,489...172,439,994
JBrowse link
G Sec61a1 SEC61 translocon subunit alpha 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:120,973,519...120,987,871
Ensembl chr 4:120,960,626...120,987,925
JBrowse link
G Sec61a2 SEC61 translocon subunit alpha 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:72,407,574...72,445,630
Ensembl chr17:72,407,671...72,434,494
JBrowse link
G Sec61b SEC61 translocon subunit beta part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:61,773,594...61,781,804
Ensembl chr 5:61,773,594...61,781,804
JBrowse link
G Ssr3 signal sequence receptor subunit 3 NAS RGD PMID:7916687 RGD:61758 NCBI chr 2:149,605,005...149,625,069
Ensembl chr 2:149,605,005...149,625,132
JBrowse link
G Ssr4 signal sequence receptor subunit 4 IDA RGD PMID:7916687 RGD:61758 NCBI chr  X:151,524,191...151,528,218
Ensembl chr  X:151,524,009...151,528,202
JBrowse link
Sec62/Sec63 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec63 SEC63 homolog, protein translocation regulator part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:46,245,101...46,314,055
Ensembl chr20:46,245,101...46,314,055
JBrowse link
signal recognition particle receptor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rp9 RP9, pre-mRNA splicing factor part_of ISO (MGI:3688359|PMID:15652350) RGD PMID:15652350 MGI:3688359 NCBI chr 8:20,955,447...21,005,225
Ensembl chr 8:20,941,362...21,005,175
JBrowse link
G Srprb SRP receptor subunit beta part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:103,768,685...103,782,632 JBrowse link
Ssh1 translocon complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07041141.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:113,427,440...113,427,646 JBrowse link
G LOC100362376 LRRGT00025-like part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:113,427,370...113,427,696
Ensembl chr  X:113,427,440...113,427,646
JBrowse link
G LOC108348617 protein transport protein Sec61 subunit gamma pseudogene part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:75,638,449...75,638,655
Ensembl chr17:75,638,449...75,638,655
JBrowse link
G LOC499136 LRRGT00021 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:92,752,704...92,754,388
Ensembl chr 1:92,752,704...92,754,388
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19187
    cellular anatomical entity 18928
      endomembrane system 4042
        endoplasmic reticulum 1770
          rough endoplasmic reticulum 138
            rough endoplasmic reticulum lumen 6
            rough endoplasmic reticulum membrane + 53
Path 2
Term Annotations click to browse term
  cellular_component 19187
    cellular anatomical entity 18928
      intracellular anatomical structure 14074
        intracellular organelle 12461
          intracellular membrane-bounded organelle 11099
            endoplasmic reticulum 1770
              rough endoplasmic reticulum 138
                rough endoplasmic reticulum lumen 6
                rough endoplasmic reticulum membrane + 53
paths to the root