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ONTOLOGY REPORT - ANNOTATIONS


Term:endoplasmic reticulum lumen
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Accession:GO:0005788 term browser browse the term
Definition:The volume enclosed by the membranes of the endoplasmic reticulum.
Synonyms:exact_synonym: ER cisterna;   ER lumen;   cisternal lumen;   endoplasmic reticulum cisterna
 alt_id: GO:0016022


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endoplasmic reticulum lumen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ache acetylcholinesterase JBrowse link 12 22,472,358 22,477,052 RGD:2301187
G Alg12 ALG12, alpha-1,6-mannosyltransferase JBrowse link 7 129,798,663 129,812,677 RGD:1600115
G Bche butyrylcholinesterase JBrowse link 2 171,104,476 171,196,186 RGD:2301187
G Calr calreticulin JBrowse link 19 25,956,771 25,961,666 RGD:1624291
G Calr3 calreticulin 3 JBrowse link 16 19,097,391 19,124,062 RGD:1624291
RGD:1600115
G Calr4 calreticulin 4 JBrowse link 5 128,865,339 128,900,135 RGD:1600115
G Calu calumenin JBrowse link 4 56,625,611 56,653,112 RGD:633877
G Cd4 Cd4 molecule JBrowse link 4 157,381,862 157,408,357 RGD:1624291
G Cercam cerebral endothelial cell adhesion molecule JBrowse link 3 8,421,116 8,444,743 RGD:1600115
G Ces1c carboxylesterase 1C JBrowse link 19 15,294,524 15,335,005 RGD:1600115
G Ces1d carboxylesterase 1D JBrowse link 19 15,195,514 15,239,827 RGD:70683
RGD:1600115
RGD:1624291
G Ces1e carboxylesterase 1E RGD:1600115
G Ces1f carboxylesterase 1F JBrowse link 19 15,081,117 15,126,629 RGD:1600115
G Cesl1 carboxylesterase-like 1 RGD:1600115
G Cln6 CLN6, transmembrane ER protein JBrowse link 8 67,733,215 67,748,170 RGD:1624291
RGD:1600115
G Colgalt1 collagen beta(1-O)galactosyltransferase 1 JBrowse link 16 20,039,969 20,052,277 RGD:1624291
RGD:1600115
G Cyp2w1 cytochrome P450, family 2, subfamily w, polypeptide 1 JBrowse link 12 17,382,749 17,387,909 RGD:1624291
RGD:1600115
G Dnajb11 DnaJ heat shock protein family (Hsp40) member B11 JBrowse link 11 81,741,342 81,757,806 RGD:1600115
G Dnajb9 DnaJ heat shock protein family (Hsp40) member B9 JBrowse link 6 64,165,913 64,170,122 RGD:1600115
RGD:1624291
G Dnajc10 DnaJ heat shock protein family (Hsp40) member C10 JBrowse link 3 67,538,289 67,578,308 RGD:1624291
RGD:1600115
G Dnajc3 DnaJ heat shock protein family (Hsp40) member C3 JBrowse link 15 104,186,918 104,226,236 RGD:1624291
RGD:1600115
G Edem3 ER degradation enhancing alpha-mannosidase like protein 3 JBrowse link 13 69,135,095 69,197,708 RGD:1624291
RGD:1600115
G Eogt EGF domain specific O-linked N-acetylglucosamine transferase JBrowse link 4 129,477,779 129,515,435 RGD:1600115
G Erap1 endoplasmic reticulum aminopeptidase 1 JBrowse link 2 1,410,877 1,449,734 RGD:1299520
G Erlec1 endoplasmic reticulum lectin 1 JBrowse link 14 115,314,890 115,352,871 RGD:1624291
RGD:13792537
G Erp29 endoplasmic reticulum protein 29 JBrowse link 12 40,619,377 40,625,884 RGD:728752
G Erp44 endoplasmic reticulum protein 44 JBrowse link 5 63,937,866 64,030,827 RGD:1624291
RGD:1600115
G Fkbp9 FKBP prolyl isomerase 9 JBrowse link 4 87,167,514 87,234,198 RGD:1600115
G Foxred2 FAD-dependent oxidoreductase domain containing 2 JBrowse link 7 119,172,189 119,186,670 RGD:1624291
RGD:13792537
G Gbf1 golgi brefeldin A resistant guanine nucleotide exchange factor 1 JBrowse link 1 265,904,616 266,033,107 RGD:2316367
G Hsp90b1 heat shock protein 90 beta family member 1 JBrowse link 7 27,226,570 27,240,533 RGD:1600115
RGD:1624291
G Hspa5 heat shock protein family A (Hsp70) member 5 JBrowse link 3 13,838,304 13,842,763 RGD:1624291
RGD:13792537
G Hyou1 hypoxia up-regulated 1 JBrowse link 8 48,699,796 48,711,912 RGD:1600115
G Jmjd8 jumonji domain containing 8 JBrowse link 10 15,195,954 15,198,870 RGD:1600115
RGD:1624291
G Lyz2 lysozyme 2 JBrowse link 7 60,335,968 60,341,264 RGD:1599861
G Manf mesencephalic astrocyte-derived neurotrophic factor JBrowse link 8 115,623,175 115,626,408 RGD:1624291
G Minpp1 multiple inositol-polyphosphate phosphatase 1 JBrowse link 1 251,045,352 251,071,045 RGD:1600115
G Mzb1 marginal zone B and B1 cell-specific protein JBrowse link 18 28,436,546 28,438,607 RGD:1624291
RGD:1600115
G Ngf nerve growth factor JBrowse link 2 204,886,158 204,939,523 RGD:1600115
G Os9 OS9, endoplasmic reticulum lectin JBrowse link 7 70,378,625 70,407,135 RGD:8554273
RGD:13792537
RGD:1624291
G P4ha1 prolyl 4-hydroxylase subunit alpha 1 JBrowse link 20 28,920,616 28,972,576 RGD:1600115
G P4ha3 prolyl 4-hydroxylase subunit alpha 3 JBrowse link 1 165,295,835 165,330,922 RGD:1600115
G P4hb prolyl 4-hydroxylase subunit beta JBrowse link 10 109,736,459 109,748,070 RGD:1600115
G Pdia3 protein disulfide isomerase family A, member 3 JBrowse link 3 113,376,983 113,400,707 RGD:1600115
G Pdia4 protein disulfide isomerase family A, member 4 JBrowse link 4 77,470,636 77,489,535 RGD:1600115
G Pdia5 protein disulfide isomerase family A, member 5 JBrowse link 11 68,493,035 68,578,999 RGD:1600115
G Pdia6 protein disulfide isomerase family A, member 6 JBrowse link 6 42,568,269 42,585,654 RGD:1580664
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 JBrowse link 12 22,716,421 22,726,982 RGD:1600115
G Poglut1 protein O-glucosyltransferase 1 JBrowse link 11 64,761,493 64,788,210 RGD:1600115
RGD:1624291
G Poglut2 protein O-glucosyltransferase 2 JBrowse link 9 50,872,492 50,884,596 RGD:1624291
RGD:1600115
G Poglut3 protein O-glucosyltransferase 3 JBrowse link 8 57,964,988 57,982,605 RGD:1600115
G Ppib peptidylprolyl isomerase B JBrowse link 8 71,719,681 71,725,538 RGD:1600115
G Ptprn2 protein tyrosine phosphatase, receptor type N2 JBrowse link 6 144,384,773 145,133,042 RGD:61724
G Rcn2 reticulocalbin 2 JBrowse link 8 60,709,851 60,726,938 RGD:1600115
G Rcn3 reticulocalbin 3 JBrowse link 1 101,076,971 101,086,198 RGD:1600115
G Rdh16 retinol dehydrogenase 16 JBrowse link 7 71,058,150 71,072,685 RGD:1624291
G Rdh5 retinol dehydrogenase 5 JBrowse link 7 3,335,681 3,342,573 RGD:1600115
RGD:1624291
G Rnaset2 ribonuclease T2 JBrowse link 1 53,174,879 53,192,048 RGD:1624291
G Selenof selenoprotein F JBrowse link 2 250,600,823 250,633,903 RGD:1624291
RGD:1600115
G Serpinh1 serpin family H member 1 JBrowse link 1 164,301,010 164,308,306 RGD:1600115
G Sil1 SIL1 nucleotide exchange factor JBrowse link 18 28,067,476 28,302,008 RGD:1600115
G Slc27a2 solute carrier family 27 member 2 JBrowse link 3 119,014,620 119,052,531 RGD:1600115
RGD:13792537
RGD:8554608
RGD:1624291
G Tmem43 transmembrane protein 43 JBrowse link 4 123,118,468 123,133,610 RGD:1624291
RGD:1600115
G Tor1a torsin family 1, member A JBrowse link 3 9,800,322 9,807,318 RGD:1624291
RGD:13792537
RGD:1600115
G Tor1b torsin family 1, member B JBrowse link 3 9,792,818 9,798,924 RGD:1624291
RGD:13792537
G Tor2a torsin family 2, member A JBrowse link 3 11,794,731 11,800,261 RGD:1624291
RGD:13792537
G Tor3a torsin family 3, member A JBrowse link 13 74,246,504 74,277,694 RGD:1624291
RGD:13792537
G Tor4a torsin family 4, member A JBrowse link 3 2,407,857 2,411,544 RGD:13792537
G Txndc12 thioredoxin domain containing 12 JBrowse link 5 128,450,830 128,475,858 RGD:1624291
RGD:1600115
G Txndc16 thioredoxin domain containing 16 JBrowse link 15 19,472,522 19,547,384 RGD:1624291
RGD:1600115
G Txndc5 thioredoxin domain containing 5 JBrowse link 17 26,925,828 26,953,981 RGD:1624291
RGD:1600115
G Uggt1 UDP-glucose glycoprotein glucosyltransferase 1 JBrowse link 9 42,692,156 42,805,680 RGD:8553934
perinuclear endoplasmic reticulum lumen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clu clusterin JBrowse link 15 42,626,612 42,665,858 RGD:1600115
RGD:1624291
rough endoplasmic reticulum lumen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ache acetylcholinesterase JBrowse link 12 22,472,358 22,477,052 RGD:1624291
G Edn1 endothelin 1 JBrowse link 17 22,136,814 22,143,745 RGD:8662311
G Lrpap1 LDL receptor related protein associated protein 1 JBrowse link 14 80,911,281 80,923,290 RGD:1641935
RGD:1624291
G Lyz2 lysozyme 2 JBrowse link 7 60,335,968 60,341,264 RGD:1599861
G Resp18 regulated endocrine-specific protein 18 JBrowse link 9 82,470,794 82,477,136 RGD:69957
G Vtn vitronectin JBrowse link 10 65,767,960 65,771,040 RGD:10003091
sarcoplasmic reticulum lumen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Calr calreticulin JBrowse link 19 25,956,771 25,961,666 RGD:1600115
G Calu calumenin JBrowse link 4 56,625,611 56,653,112 RGD:1600115
G Casq1 calsequestrin 1 JBrowse link 13 90,592,676 90,602,365 RGD:1600115
RGD:13792537
RGD:1624291
G Casq2 calsequestrin 2 JBrowse link 2 204,512,361 204,568,643 RGD:1600115
RGD:13792537
RGD:1624291
G Hsp90b1 heat shock protein 90 beta family member 1 JBrowse link 7 27,226,570 27,240,533 RGD:1600115
G Manf mesencephalic astrocyte-derived neurotrophic factor JBrowse link 8 115,623,175 115,626,408 RGD:1600115
terminal cisterna lumen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Casq1 calsequestrin 1 JBrowse link 13 90,592,676 90,602,365 RGD:2313258

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18531
    intracellular 13046
      cytoplasm 10132
        endoplasmic reticulum 1261
          endoplasmic reticulum lumen 79
            cortical endoplasmic reticulum lumen 0
            luminal surveillance complex 0
            mannosyl-oligosaccharide 1,2-alpha-mannosidase complex 0
            perinuclear endoplasmic reticulum lumen 1
            rough endoplasmic reticulum lumen 6
            sarcoplasmic reticulum lumen + 6
            smooth endoplasmic reticulum lumen 0
Path 2
Term Annotations click to browse term
  cellular_component 18531
    cellular anatomical entity 18199
      organelle 11887
        intracellular organelle 11372
          intracellular membrane-bounded organelle 9689
            endoplasmic reticulum 1261
              endoplasmic reticulum lumen 79
                cortical endoplasmic reticulum lumen 0
                luminal surveillance complex 0
                mannosyl-oligosaccharide 1,2-alpha-mannosidase complex 0
                perinuclear endoplasmic reticulum lumen 1
                rough endoplasmic reticulum lumen 6
                sarcoplasmic reticulum lumen + 6
                smooth endoplasmic reticulum lumen 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.