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ONTOLOGY REPORT - ANNOTATIONS


Term:endoplasmic reticulum lumen
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Accession:GO:0005788 term browser browse the term
Definition:The volume enclosed by the membranes of the endoplasmic reticulum.
Synonyms:exact_synonym: ER cisterna;   ER lumen;   cisternal lumen;   endoplasmic reticulum cisterna
 alt_id: GO:0016022



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endoplasmic reticulum lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase IDA RGD PMID:1133098 RGD:2301187 NCBI chr12:19,407,359...19,413,713
Ensembl chr12:19,407,360...19,413,651
JBrowse link
G Alg12 ALG12, alpha-1,6-mannosyltransferase located_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:119,895,112...119,909,488
Ensembl chr 7:119,895,120...119,909,458
JBrowse link
G Bche butyrylcholinesterase IDA RGD PMID:1133098 RGD:2301187 NCBI chr 2:158,308,674...158,401,148
Ensembl chr 2:158,307,584...158,401,148
JBrowse link
G Calr calreticulin located_in ISO (PMID:11149926), (PMID:21590275)
(MGI:4940949|PMID:21187406)
RGD PMID:11149926 PMID:21187406 PMID:21590275 MGI:4940949 NCBI chr19:23,308,525...23,313,420
Ensembl chr19:23,308,351...23,313,414
JBrowse link
G Calr3 calreticulin 3 located_in ISO (PMID:21590275) RGD PMID:21590275 NCBI chr16:17,396,064...17,423,166
Ensembl chr16:17,396,247...17,423,015
JBrowse link
G Calr4 calreticulin 4 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:123,986,870...124,022,436
Ensembl chr 5:123,987,474...124,022,417
JBrowse link
G Calu calumenin IDA RGD PMID:8416973 RGD:633877 NCBI chr 4:57,949,086...57,976,589
Ensembl chr 4:57,948,997...57,976,593
JBrowse link
G Cd4 Cd4 molecule located_in ISO (MGI:3611991|PMID:16223484) RGD PMID:16223484 MGI:3611991 NCBI chr 4:157,668,878...157,695,366 JBrowse link
G Cercam cerebral endothelial cell adhesion molecule located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:13,118,150...13,155,960
Ensembl chr 3:13,142,107...13,155,956
JBrowse link
G Ces1c carboxylesterase 1C located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr19:13,926,401...13,955,527
Ensembl chr19:13,926,260...13,955,524
JBrowse link
G Ces1d carboxylesterase 1D located_in NAS
ISO
ISS
(MGI:5318031|PMID:15220344)
GO_REF:0000024
RGD
UniProt
PMID:15220344 PMID:2386485 GO_REF:0000024 MGI:5318031, RGD:70683 NCBI chr19:13,873,490...13,912,035
Ensembl chr19:13,796,623...13,912,035
JBrowse link
G Ces1e carboxylesterase 1E located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr19:13,833,154...13,869,627
Ensembl chr19:13,796,623...13,912,035
JBrowse link
G Cesl1 carboxylesterase-like 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr19:22,670,709...23,006,329
Ensembl chr19:22,670,712...22,712,608
JBrowse link
G Cln6 CLN6, transmembrane ER protein located_in ISO (PMID:15010453) RGD PMID:15010453 NCBI chr 8:63,303,356...63,318,360
Ensembl chr 8:63,303,029...63,318,360
JBrowse link
G Colgalt1 collagen beta(1-O)galactosyltransferase 1 located_in ISO (PMID:20470363) RGD PMID:20470363 NCBI chr16:18,319,796...18,332,106
Ensembl chr16:18,319,795...18,332,106
JBrowse link
G Cyp2w1 cytochrome P450, family 2, subfamily w, polypeptide 1 located_in ISO (PMID:20805301) RGD PMID:20805301 NCBI chr12:15,291,552...15,296,421
Ensembl chr12:15,291,704...15,296,421
JBrowse link
G Dnajb11 DnaJ heat shock protein family (Hsp40) member B11 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr11:78,151,750...78,168,259
Ensembl chr11:78,150,429...78,180,407
JBrowse link
G Dnajb9 DnaJ heat shock protein family (Hsp40) member B9 located_in ISS
ISO
GO_REF:0000024
(MGI:5499714|PMID:22267725)
UniProt
RGD
PMID:22267725 GO_REF:0000024 MGI:5499714 NCBI chr 6:61,270,385...61,276,795
Ensembl chr 6:61,269,913...61,275,063
JBrowse link
G Dnajc10 DnaJ heat shock protein family (Hsp40) member C10 located_in
is_active_in
ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:23769672)
UniProt
RGD
PMID:23769672 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 3:65,232,031...65,272,732
Ensembl chr 3:65,232,697...65,272,719
JBrowse link
G Dnajc3 DnaJ heat shock protein family (Hsp40) member C3 located_in ISO (MGI:4418606|PMID:18923430) RGD PMID:18923430 MGI:4418606 NCBI chr15:96,025,729...96,065,114
Ensembl chr15:96,025,624...96,065,181
JBrowse link
G Edem3 ER degradation enhancing alpha-mannosidase like protein 3 located_in ISO (MGI:3654428|PMID:16431915) RGD PMID:16431915 MGI:3654428 NCBI chr13:63,858,282...63,920,538
Ensembl chr13:63,858,716...63,920,523
JBrowse link
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 part_of IDA PMID:10369669 UniProt PMID:10369669 RGD:40902965 NCBI chr 6:104,019,095...104,055,311
Ensembl chr 6:104,019,185...104,055,530
JBrowse link
G Eogt EGF domain specific O-linked N-acetylglucosamine transferase is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:129,718,897...129,756,558
Ensembl chr 4:129,718,901...129,756,445
JBrowse link
G Erap1 endoplasmic reticulum aminopeptidase 1 IDA RGD PMID:12436109 RGD:1299520 NCBI chr 2:3,931,817...3,970,735
Ensembl chr 2:3,931,904...3,972,447
JBrowse link
G Erlec1 endoplasmic reticulum lectin 1 located_in ISO (PMID:16531414), (PMID:18264092) RGD PMID:16531414 PMID:18264092 NCBI chr14:104,655,745...104,693,508
Ensembl chr14:104,655,673...104,693,480
JBrowse link
G Erp29 endoplasmic reticulum protein 29 TAS RGD PMID:11884402 RGD:728752 NCBI chr12:35,089,698...35,095,952
Ensembl chr12:35,089,707...35,096,376
JBrowse link
G Erp44 endoplasmic reticulum protein 44 located_in ISO (PMID:11847130) RGD PMID:11847130 NCBI chr 5:62,516,550...62,610,762
Ensembl chr 5:62,516,551...62,610,761
JBrowse link
G Fkbp9 FKBP prolyl isomerase 9 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:86,106,256...86,156,723
Ensembl chr 4:86,106,282...86,156,721
JBrowse link
G Foxred2 FAD-dependent oxidoreductase domain containing 2 located_in
is_active_in
ISO
IBA
(PMID:19706418)
PMID:21873635
RGD PMID:19706418 PMID:21873635 RGD:13792537 NCBI chr 7:109,521,761...109,538,300
Ensembl chr 7:109,521,761...109,540,874
JBrowse link
G Gbf1 golgi brefeldin A resistant guanine nucleotide exchange factor 1 IDA RGD PMID:10402461 RGD:2316367 NCBI chr 1:245,018,535...245,147,052
Ensembl chr 1:245,018,568...245,147,042
JBrowse link
G H6pd hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) located_in ISO (PMID:18628520) RGD PMID:18628520 NCBI chr 5:160,434,499...160,470,203
Ensembl chr 5:160,438,697...160,470,171
JBrowse link
G Hsp90b1 heat shock protein 90 beta family member 1 located_in ISO
IEA
(PMID:10497210)
GO_REF:0000107
RGD
Ensembl
PMID:10497210 GO_REF:0000107 NCBI chr 7:21,110,431...21,124,762
Ensembl chr 7:21,110,457...21,124,788
JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 located_in
is_active_in
ISO
IBA
(PMID:21289099)
PMID:21873635
(MGI:4437543|PMID:19816510)
RGD PMID:19816510 PMID:21289099 PMID:21873635 MGI:4437543, RGD:13792537 NCBI chr 3:18,055,507...18,059,969
Ensembl chr 3:18,055,405...18,059,891
JBrowse link
G Hyou1 hypoxia up-regulated 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:44,706,073...44,718,189
Ensembl chr 8:44,706,263...44,718,186
JBrowse link
G Jmjd8 jumonji domain containing 8 located_in ISS
ISO
GO_REF:0000024
(PMID:29133832)
UniProt
RGD
PMID:29133832 GO_REF:0000024 NCBI chr10:14,848,965...14,851,881
Ensembl chr10:14,848,980...14,851,879
JBrowse link
G LOC685171 similar to protein disulfide isomerase-associated 6 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:47,606,582...47,607,800
Ensembl chr 4:47,606,582...47,607,800
JBrowse link
G Lyz2 lysozyme 2 IDA RGD PMID:9208328 RGD:1599861 NCBI chr 7:52,906,810...52,912,154
Ensembl chr 7:52,906,811...52,912,106
JBrowse link
G Manf mesencephalic astrocyte-derived neurotrophic factor located_in ISO (PMID:29497057) RGD PMID:29497057 NCBI chr 8:107,500,856...107,551,595
Ensembl chr 8:107,548,352...107,551,438
JBrowse link
G Minpp1 multiple inositol-polyphosphate phosphatase 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:230,354,483...230,379,730
Ensembl chr 1:230,354,438...230,379,730
JBrowse link
G Mzb1 marginal zone B and B1 cell-specific protein located_in ISS
ISO
GO_REF:0000024
(MGI:4866969|PMID:21093319)
UniProt
RGD
PMID:21093319 GO_REF:0000024 MGI:4866969 NCBI chr18:27,238,999...27,241,060
Ensembl chr18:27,239,001...27,241,094
JBrowse link
G Ngf nerve growth factor located_in TAS Reactome:R-RNO-188325 Reactome Reactome:R-RNO-188325 NCBI chr 2:189,901,058...189,954,452
Ensembl chr 2:189,901,058...189,954,452
JBrowse link
G Os9 OS9, endoplasmic reticulum lectin located_in
is_active_in
ISO
IDA
IBA
(PMID:18264092), (PMID:18417469), (PMID:19084021)
PMID:21873635
RGD PMID:18264092 PMID:18417469 PMID:19084021 PMID:19084021 PMID:21873635 RGD:8554273, RGD:13792537 NCBI chr 7:62,915,498...62,957,591
Ensembl chr 7:62,915,515...62,943,745
JBrowse link
G P4ha1 prolyl 4-hydroxylase subunit alpha 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr20:27,302,046...27,352,098
Ensembl chr20:27,302,141...27,352,786
JBrowse link
G P4ha2 prolyl 4-hydroxylase subunit alpha 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:38,243,047...38,271,989
Ensembl chr10:38,243,139...38,287,314
JBrowse link
G P4ha3 prolyl 4-hydroxylase subunit alpha 3 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:154,628,723...154,663,779
Ensembl chr 1:154,628,736...154,663,775
JBrowse link
G P4hb prolyl 4-hydroxylase subunit beta located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:105,836,972...105,848,583
Ensembl chr10:105,836,982...105,848,500
JBrowse link
G Pdia3 protein disulfide isomerase family A, member 3 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:108,388,189...108,412,013
Ensembl chr 3:108,388,245...108,413,236
JBrowse link
G Pdia4 protein disulfide isomerase family A, member 4 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:76,803,198...76,822,245
Ensembl chr 4:76,803,198...76,822,107
JBrowse link
G Pdia5 protein disulfide isomerase family A, member 5 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr11:65,272,152...65,359,087
Ensembl chr11:65,272,155...65,359,084
JBrowse link
G Pdia6 protein disulfide isomerase family A, member 6 located_in
is_active_in
IEA
IBA
IDA
GO_REF:0000044
PMID:21873635
PMID:14561759
UniProt PMID:21873635 PMID:14561759 GO_REF:0000044, RGD:13792537, RGD:1580664 NCBI chr 6:40,062,980...40,080,223
Ensembl chr 6:40,062,926...40,080,613
JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:19,676,384...19,686,945
Ensembl chr12:19,676,386...19,686,960
JBrowse link
G Poglut1 protein O-glucosyltransferase 1 located_in ISO
ISS
IEA
(PMID:16524674), (PMID:27807076)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:16524674 PMID:27807076 GO_REF:0000024 GO_REF:0000107 NCBI chr11:62,198,600...62,226,446
Ensembl chr11:62,198,513...62,226,434
JBrowse link
G Poglut2 protein O-glucosyltransferase 2 located_in ISO (MGI:1930400|PMID:11167020) RGD PMID:11167020 MGI:1930400 NCBI chr 9:46,256,388...46,268,714
Ensembl chr 9:46,256,390...46,268,532
JBrowse link
G Poglut3 protein O-glucosyltransferase 3 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:53,777,614...53,795,404
Ensembl chr 8:53,777,785...53,795,399
JBrowse link
G Ppib peptidylprolyl isomerase B located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:66,603,877...66,609,734
Ensembl chr 8:66,603,861...66,630,428
JBrowse link
G Ptprn2 protein tyrosine phosphatase, receptor type N2 IDA RGD PMID:8663434 RGD:61724 NCBI chr 6:137,439,572...138,191,575
Ensembl chr 6:137,439,540...138,191,575
JBrowse link
G Rcn2 reticulocalbin 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:56,449,206...56,466,253
Ensembl chr 8:56,449,206...56,466,251
JBrowse link
G Rcn3 reticulocalbin 3 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:95,564,503...95,573,762
Ensembl chr 1:95,564,380...95,573,725
JBrowse link
G Rdh16 retinol dehydrogenase 16 located_in ISO (MGI:3611991|PMID:16223484) RGD PMID:16223484 MGI:3611991 NCBI chr 7:63,616,724...63,624,120
Ensembl chr 7:63,597,536...63,624,124
JBrowse link
G Rdh5 retinol dehydrogenase 5 located_in ISO (PMID:11675386)
(MGI:1355159|PMID:10739682), (MGI:3611991|PMID:16223484)
RGD PMID:10739682 PMID:11675386 PMID:16223484 MGI:1355159 MGI:3611991 NCBI chr 7:1,340,545...1,347,361
Ensembl chr 7:1,340,934...1,351,558
JBrowse link
G Rnaset2 ribonuclease T2 located_in ISO (PMID:16620762) RGD PMID:16620762 NCBI chr 1:52,576,344...52,603,151
Ensembl chr 1:52,585,929...52,603,147
JBrowse link
G Selenof selenoprotein F located_in
is_active_in
ISO
ISS
IBA
IEA
(PMID:11278576)
GO_REF:0000024
PMID:21873635
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:11278576 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 2:233,642,075...233,674,853
Ensembl chr 2:233,641,932...233,674,846
JBrowse link
G Selenom selenoprotein M is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:78,395,826...78,398,429
Ensembl chr14:78,395,826...78,398,429
JBrowse link
G Serpinh1 serpin family H member 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:153,643,500...153,650,853
Ensembl chr 1:153,643,510...153,650,801
JBrowse link
G Sil1 SIL1 nucleotide exchange factor located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr18:26,872,423...27,104,365
Ensembl chr18:26,872,429...27,104,332
JBrowse link
G Slc27a2 solute carrier family 27 member 2 located_in
is_active_in
ISS
IBA
IEA
ISO
PMID:10198260
PMID:21873635
GO_REF:0000107
(PMID:10198260)
Ensembl
RGD
PMID:10198260 PMID:10198260 PMID:21873635 GO_REF:0000107, RGD:8554608, RGD:13792537 NCBI chr 3:113,804,728...113,842,208
Ensembl chr 3:113,804,728...113,842,208
JBrowse link
G Sumf1 sulfatase modifying factor 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:141,078,735...141,160,711
Ensembl chr 4:141,078,741...141,160,708
JBrowse link
G Sumf2 sulfatase modifying factor 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:26,853,561...26,871,835
Ensembl chr12:26,853,200...26,871,816
JBrowse link
G Tmem43 transmembrane protein 43 located_in ISO (MGI:3804743|PMID:18230648) RGD PMID:18230648 MGI:3804743 NCBI chr 4:123,977,680...123,992,823
Ensembl chr 4:123,977,625...123,992,825
JBrowse link
G Tor1a torsin family 1, member A located_in
is_active_in
ISS
ISO
IBA
GO_REF:0000024
(PMID:17037984), (PMID:20015956)
PMID:21873635
(MGI:4430025|PMID:20015956)
UniProt
RGD
PMID:17037984 PMID:20015956 PMID:21873635 GO_REF:0000024 MGI:4430025, RGD:13792537 NCBI chr 3:14,250,667...14,257,704
Ensembl chr 3:14,250,676...14,257,691
JBrowse link
G Tor1b torsin family 1, member B located_in
is_active_in
ISO
IBA
(MGI:4430025|PMID:20015956)
(PMID:20015956)
PMID:21873635
RGD PMID:20015956 PMID:21873635 MGI:4430025, RGD:13792537 NCBI chr 3:14,243,181...14,249,279
Ensembl chr 3:14,243,243...14,249,272
JBrowse link
G Tor2a torsin family 2, member A located_in
is_active_in
ISO
IBA
(MGI:4430025|PMID:20015956)
(PMID:20015956)
PMID:21873635
RGD PMID:20015956 PMID:21873635 MGI:4430025, RGD:13792537 NCBI chr 3:16,048,566...16,053,198
Ensembl chr 3:16,048,549...16,052,634
JBrowse link
G Tor3a torsin family 3, member A located_in
is_active_in
ISO
IBA
(MGI:1343718|PMID:10208750)
(PMID:11863361), (PMID:20015956)
PMID:21873635
RGD PMID:10208750 PMID:11863361 PMID:20015956 PMID:21873635 MGI:1343718, RGD:13792537 NCBI chr13:68,769,893...68,798,738
Ensembl chr13:68,769,605...68,798,475
JBrowse link
G Tor4a torsin family 4, member A is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:8,004,292...8,007,979
Ensembl chr 3:8,002,023...8,008,042
JBrowse link
G Txndc12 thioredoxin domain containing 12 located_in
part_of
ISO
IDA
(PMID:18628206)
(MGI:3688339|PMID:12930873)
(PMID:12761212)
RGD PMID:12761212 PMID:12930873 PMID:18628206 PMID:12930873 MGI:3688339, RGD:151356646 NCBI chr 5:123,587,854...123,612,886
Ensembl chr 5:123,586,781...123,612,870
JBrowse link
G Txndc16 thioredoxin domain containing 16 located_in ISO (PMID:21359175) RGD PMID:21359175 NCBI chr15:18,351,688...18,425,833
Ensembl chr15:18,351,694...18,425,722
JBrowse link
G Txndc5 thioredoxin domain containing 5 located_in ISO (MGI:3688339|PMID:12930873) RGD PMID:12930873 MGI:3688339 NCBI chr17:26,289,880...26,318,025
Ensembl chr17:26,289,880...26,318,025
JBrowse link
G Uggt1 UDP-glucose glycoprotein glucosyltransferase 1 located_in IDA PMID:11535823 UniProt PMID:11535823 RGD:8553934 NCBI chr 9:38,355,229...38,468,473
Ensembl chr 9:38,359,089...38,468,467
JBrowse link
perinuclear endoplasmic reticulum lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clu clusterin located_in ISO
ISS
IEA
(PMID:22689054)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:22689054 GO_REF:0000024 GO_REF:0000107 NCBI chr15:40,161,068...40,200,315
Ensembl chr15:40,174,617...40,200,315
JBrowse link
rough endoplasmic reticulum lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase ISO RGD RGD:11560526 RGD:150520179 NCBI chr12:19,407,359...19,413,713
Ensembl chr12:19,407,360...19,413,651
JBrowse link
G Edn1 endothelin 1 IDA RGD PMID:10903535 RGD:8662311 NCBI chr17:22,454,924...22,460,812
Ensembl chr17:22,454,420...22,460,885
JBrowse link
G Lrpap1 LDL receptor related protein associated protein 1 is_active_in
located_in
IDA
IBA
ISO
PMID:21873635
(PMID:7774585)
RGD PMID:7774585 PMID:8223699 PMID:21873635 RGD:1641935, RGD:13792537 NCBI chr14:75,651,371...75,663,380
Ensembl chr14:75,651,376...75,665,414
JBrowse link
G Lyz2 lysozyme 2 IDA RGD PMID:9208328 RGD:1599861 NCBI chr 7:52,906,810...52,912,154
Ensembl chr 7:52,906,811...52,912,106
JBrowse link
G Resp18 regulated endocrine-specific protein 18 IDA RGD PMID:8132649 RGD:69957 NCBI chr 9:76,765,179...76,771,824
Ensembl chr 9:76,764,590...76,778,722
JBrowse link
G Vtn vitronectin IDA RGD PMID:10192552 RGD:10003091 NCBI chr10:63,394,732...63,397,812
Ensembl chr10:63,394,719...63,397,810
JBrowse link
sarcoplasmic reticulum lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Calr calreticulin located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr19:23,308,525...23,313,420
Ensembl chr19:23,308,351...23,313,414
JBrowse link
G Calu calumenin located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:57,949,086...57,976,589
Ensembl chr 4:57,948,997...57,976,593
JBrowse link
G Casq1 calsequestrin 1 located_in
is_active_in
ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(MGI:3625212|PMID:16600288), (MGI:5306707|PMID:22049211)
UniProt
RGD
PMID:16600288 PMID:22049211 PMID:21873635 GO_REF:0000024 MGI:3625212 MGI:5306707, RGD:13792537 NCBI chr13:84,670,648...84,680,339
Ensembl chr13:84,670,649...84,680,339
JBrowse link
G Casq2 calsequestrin 2 located_in
is_active_in
IEA
IBA
ISO
GO_REF:0000044
PMID:21873635
(MGI:4453101|PMID:19920148)
UniProt
RGD
PMID:19920148 PMID:21873635 GO_REF:0000044 MGI:4453101, RGD:13792537 NCBI chr 2:189,526,003...189,582,276
Ensembl chr 2:189,525,960...189,582,267
JBrowse link
G Hsp90b1 heat shock protein 90 beta family member 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:21,110,431...21,124,762
Ensembl chr 7:21,110,457...21,124,788
JBrowse link
G Manf mesencephalic astrocyte-derived neurotrophic factor located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:107,500,856...107,551,595
Ensembl chr 8:107,548,352...107,551,438
JBrowse link
terminal cisterna lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casq1 calsequestrin 1 IDA RGD PMID:6355123 RGD:2313258 NCBI chr13:84,670,648...84,680,339
Ensembl chr13:84,670,649...84,680,339
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19187
    cellular anatomical entity 18928
      endomembrane system 4042
        endoplasmic reticulum 1770
          endoplasmic reticulum lumen 85
            cortical endoplasmic reticulum lumen 0
            luminal surveillance complex 0
            mannosyl-oligosaccharide 1,2-alpha-mannosidase complex 0
            perinuclear endoplasmic reticulum lumen 1
            rough endoplasmic reticulum lumen 6
            sarcoplasmic reticulum lumen + 6
            smooth endoplasmic reticulum lumen 0
Path 2
Term Annotations click to browse term
  cellular_component 19187
    cellular anatomical entity 18928
      intracellular anatomical structure 14074
        intracellular organelle 12461
          intracellular membrane-bounded organelle 11099
            endoplasmic reticulum 1770
              endoplasmic reticulum lumen 85
                cortical endoplasmic reticulum lumen 0
                luminal surveillance complex 0
                mannosyl-oligosaccharide 1,2-alpha-mannosidase complex 0
                perinuclear endoplasmic reticulum lumen 1
                rough endoplasmic reticulum lumen 6
                sarcoplasmic reticulum lumen + 6
                smooth endoplasmic reticulum lumen 0
paths to the root