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ONTOLOGY REPORT - ANNOTATIONS

Term:vacuolar lumen
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Accession:GO:0005775 term browser browse the term
Definition:The volume enclosed within the vacuolar membrane.


show annotations for term's descendants           Sort by:
vacuolar lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLN5 CLN5 intracellular trafficking protein located_in IEA Ensembl GO_REF:0000107 NCBI chr11:49,105,822...49,128,425
Ensembl chr11:49,105,878...49,129,886 		JBrowse link
autolysosome lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GAA alpha glucosidase located_in
is_active_in		 IEA
ISO		 (PMID:9668092) Ensembl
MGI		 PMID:9668092 GO_REF:0000107 NCBI chr12:2,315,807...2,339,867
Ensembl chr12:2,314,591...2,336,988 		JBrowse link
azurophil granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PRSS57 serine protease 57 located_in ISO (PMID:23904161) UniProt PMID:23904161 NCBI chr 2:77,649,741...77,657,627
Ensembl chr 2:77,650,879...77,655,712 		JBrowse link
G PRTN3 proteinase 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:77,520,314...77,526,303
Ensembl chr 2:77,520,314...77,523,563 		JBrowse link
lysosomal lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACP2 acid phosphatase 2, lysosomal located_in IEA UniProt GO_REF:0000044 NCBI chr 2:15,334,015...15,342,531
Ensembl chr 2:15,334,001...15,347,770 		JBrowse link
G CUBN cubilin ISO RGD PMID:15578272 RGD:2317835 NCBI chr10:43,102,931...43,414,692
Ensembl chr10:43,102,946...43,414,758 		JBrowse link
G EPDR1 ependymin related 1 located_in IEA UniProt GO_REF:0000044 NCBI chr 9:108,417,997...108,447,180
Ensembl chr 9:108,418,041...108,447,171 		JBrowse link
G FASLG Fas ligand located_in IEA UniProt GO_REF:0000044 NCBI chr 9:115,068,314...115,075,147
Ensembl chr 9:115,068,090...115,076,464 		JBrowse link
G GBA1 glucosylceramidase beta 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:94,583,905...94,606,689
Ensembl chr 4:94,584,134...94,609,745 		JBrowse link
G GUSB glucuronidase beta is_active_in ISO (PMID:23897660)
(PMID:8200966)		 MGI PMID:8200966 PMID:23897660 NCBI chr 3:16,672,071...16,686,520
Ensembl chr 3:16,671,389...16,689,203 		JBrowse link
G IDS iduronate 2-sulfatase located_in
is_active_in		 IEA
ISO		 (PMID:17876721) Ensembl
MGI		 PMID:17876721 GO_REF:0000107 NCBI chr  X:121,572,797...121,596,525
Ensembl chr  X:121,572,807...121,596,513 		JBrowse link
G IDUA alpha-L-iduronidase is_active_in ISO (PMID:17101178)
(PMID:9660052)		 MGI PMID:9660052 PMID:17101178 NCBI chr 8:334,604...351,970
Ensembl chr 8:334,617...351,969 		JBrowse link
G LGMN legumain located_in
is_active_in		 IEA
ISO		 (PMID:9872320) Ensembl
UniProt		 PMID:9872320 GO_REF:0000107 NCBI chr 7:114,176,217...114,210,096
Ensembl chr 7:114,173,693...114,217,102 		JBrowse link
G LOC100154844 heparan-alpha-glucosaminide N-acetyltransferase is_active_in ISO (PMID:16960811) MGI PMID:16960811 NCBI chr17:8,644,388...8,665,004 JBrowse link
G MAN2B1 mannosidase alpha class 2B member 1 located_in
is_active_in		 IEA
ISO		 (PMID:9305783) Ensembl
MGI		 PMID:9305783 GO_REF:0000107 NCBI chr 2:66,329,051...66,347,051
Ensembl chr 2:66,329,045...66,348,056 		JBrowse link
G MANBA mannosidase beta is_active_in ISO (PMID:29773673) MGI PMID:29773673 NCBI chr 8:118,251,122...118,361,903
Ensembl chr 8:118,251,106...118,361,900 		JBrowse link
G NAGLU N-acetyl-alpha-glucosaminidase located_in IEA Ensembl GO_REF:0000107 Ensembl chr12:20,271,351...20,279,777 JBrowse link
G NEU1 neuraminidase 1 located_in IEA UniProt GO_REF:0000044 NCBI chr 7:23,953,721...23,958,659
Ensembl chr 7:23,947,061...23,958,666 		JBrowse link
G NSG1 neuronal vesicle trafficking associated 1 located_in ISO PMID:28874679 UniProt PMID:28874679 RGD:13432228 NCBI chr 8:6,000,054...6,023,379
Ensembl chr 8:6,000,057...6,024,769 		JBrowse link
G NSG2 neuronal vesicle trafficking associated 2 located_in ISO PMID:28874679 UniProt PMID:28874679 RGD:13432228 NCBI chr16:50,301,023...50,361,870
Ensembl chr16:50,206,076...50,361,859 		JBrowse link
G PDGFRB platelet derived growth factor receptor beta located_in IEA UniProt GO_REF:0000044 NCBI chr 2:151,155,753...151,192,818
Ensembl chr 2:151,155,756...151,192,647 		JBrowse link
G PLD3 phospholipase D family member 3 located_in IEA Ensembl
UniProt		 GO_REF:0000044 GO_REF:0000107 NCBI chr 6:48,645,347...48,667,394
Ensembl chr 6:48,645,417...48,669,430 		JBrowse link
G RNASET2 ribonuclease T2 located_in IEA UniProt GO_REF:0000044 NCBI chr 1:2,146,707...2,164,768 JBrowse link
G SCARB2 scavenger receptor class B member 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:71,838,395...71,910,461
Ensembl chr 8:71,838,397...71,940,607 		JBrowse link
G SGSH N-sulfoglucosamine sulfohydrolase located_in
is_active_in		 IEA
ISO		 (PMID:10561464) Ensembl
MGI		 PMID:10561464 GO_REF:0000107 NCBI chr12:2,241,824...2,248,388
Ensembl chr12:2,241,840...2,248,376 		JBrowse link
lysosomal matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HSPA8 heat shock protein family A (Hsp70) member 8 located_in ISO PMID:18644871 RGD
MGI		 PMID:9038169 PMID:18644871 RGD:10059368 RGD:10412301 NCBI chr 9:49,982,278...49,986,760
Ensembl chr 9:49,982,284...49,990,508 		JBrowse link
G LAMP2 lysosomal associated membrane protein 2 located_in ISO PMID:18644871 MGI PMID:18644871 RGD:10412301 NCBI chr  X:98,586,718...98,623,939
Ensembl chr  X:98,556,710...98,623,940 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18700
    cellular anatomical entity 18479
      cytoplasm 10635
        vacuole 600
          vacuolar lumen 27
            autolysosome lumen 1
            autophagosome lumen 0
            azurophil granule lumen 2
            cytolytic granule lumen 0
            fungal-type vacuole lumen 0
            lysosomal lumen + 23
            phagolysosome vesicle lumen 0
            plant-type vacuole lumen + 0
Path 2
Term Annotations click to browse term
  cellular_component 18700
    cellular anatomical entity 18479
      organelle 12432
        intracellular organelle 12012
          intracellular membrane-bounded organelle 10857
            vacuole 600
              vacuolar lumen 27
                autolysosome lumen 1
                autophagosome lumen 0
                azurophil granule lumen 2
                cytolytic granule lumen 0
                fungal-type vacuole lumen 0
                lysosomal lumen + 23
                phagolysosome vesicle lumen 0
                plant-type vacuole lumen + 0
paths to the root