Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:late endosome
go back to main search page
Accession:GO:0005770 term browser browse the term
Definition:A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center.
Synonyms:exact_synonym: prevacuolar compartment
 broad_synonym: PVC
 xref: NIF_Subcellular:nlx_subcell_20090702


show annotations for term's descendants           Sort by:
 
late endosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA5 ATP binding cassette subfamily A member 5 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 9:15,708,070...15,781,100
Ensembl chr 9:15,420,835...15,783,045
JBrowse link
G ANKRD13A ankyrin repeat domain 13A IEA UniProt GO_REF:0000044 NCBI chr26:17,135,500...17,168,003
Ensembl chr26:17,137,297...17,167,932
JBrowse link
G ANKRD13B ankyrin repeat domain 13B IEA UniProt GO_REF:0000044 NCBI chr 9:43,696,334...43,713,888
Ensembl chr 9:43,696,398...43,714,912
JBrowse link
G ANKRD13D ankyrin repeat domain 13D IEA UniProt GO_REF:0000044 NCBI chr18:50,135,779...50,145,721
Ensembl chr18:50,135,792...50,145,846
JBrowse link
G ANKRD27 ankyrin repeat domain 27 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:119,325,132...119,377,266
Ensembl chr 1:119,325,873...119,376,948
JBrowse link
G AP5M1 adaptor related protein complex 5 subunit mu 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:79,914,436...79,982,053
Ensembl chr 8:32,848,205...32,902,815
JBrowse link
G AP5S1 adaptor related protein complex 5 subunit sigma 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:17,537,539...17,543,834
Ensembl chr24:17,537,544...17,543,901
JBrowse link
G APOE apolipoprotein E ISO RGD PMID:7806565 RGD:1626382 NCBI chr 1:110,525,717...110,528,534
Ensembl chr 1:110,525,722...110,528,440
JBrowse link
G ARF1 ADP ribosylation factor 1 ISO RGD PMID:21421027 RGD:9684860 NCBI chr14:835,476...836,424
Ensembl chr14:835,476...836,424
JBrowse link
G ATG9A autophagy related 9A ISO (PMID:22456507) RGD
MGI
PMID:16940348, PMID:22456507 RGD:4889884 NCBI chr37:25,768,287...25,777,529
Ensembl chr37:25,768,275...25,890,811
JBrowse link
G ATP13A2 ATPase cation transporting 13A2 ISO (PMID:25392495) ParkinsonsUK-UCL PMID:25392495 NCBI chr 2:81,196,355...81,215,736
Ensembl chr 2:81,196,463...81,215,689
JBrowse link
G ATP7A ATPase copper transporting alpha IEA Ensembl GO_REF:0000107 NCBI chr  X:60,203,336...60,356,525
Ensembl chr  X:60,203,270...60,352,869
JBrowse link
G ATP7B ATPase copper transporting beta IEA Ensembl GO_REF:0000107 NCBI chr22:162,474...225,599
Ensembl chr22:191,888...225,266
JBrowse link
G BACE1 beta-secretase 1 ISO (PMID:16033761), (PMID:23109336), (PMID:24612608), (PMID:27084579), (PMID:27302062) UniProt PMID:16033761, PMID:23109336, PMID:24612608, PMID:27084579, PMID:27302062 NCBI chr 5:16,308,953...16,319,100
Ensembl chr 5:16,308,944...16,319,100
JBrowse link
G CD1D CD1d molecule ISO (MGI:3041278|PMID:11754812) MGI PMID:11754812 MGI:3041278 NCBI chr38:23,489,169...23,491,712 JBrowse link
G CD63 CD63 molecule ISO (MGI:3042340|PMID:14668490), (MGI:5804716|PMID:27435297) MGI PMID:14668490, PMID:27435297 MGI:3042340, MGI:5804716 NCBI chr10:126,370...139,301
Ensembl chr10:126,449...129,742
JBrowse link
G CD74 CD74 molecule ISO (MGI:3054306|PMID:15294975), (MGI:3691984|PMID:11483509) UniProt PMID:11483509, PMID:15294975 MGI:3054306, MGI:3691984 NCBI chr 4:58,689,745...58,698,421
Ensembl chr 4:58,689,752...58,698,151
JBrowse link
G CHID1 chitinase domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr18:45,226,860...45,253,425
Ensembl chr18:45,226,865...45,256,750
JBrowse link
G CHMP2B charged multivesicular body protein 2B colocalizes_with ISO (PMID:16041373) UniProtKB PMID:16041373 NCBI chr31:789,586...817,925
Ensembl chr31:791,139...817,895
JBrowse link
G CHMP3 charged multivesicular body protein 3 ISO (PMID:16554368) ParkinsonsUK-UCL
RGD
PMID:16554368, PMID:18076377 RGD:4892661 NCBI chr17:38,600,793...38,658,368 JBrowse link
G CLCN3 chloride voltage-gated channel 3 ISO (PMID:12471024) UniProtKB PMID:12471024 NCBI chr25:20,528,708...20,616,687
Ensembl chr25:20,528,699...20,615,070
JBrowse link
G CLEC16A C-type lectin domain containing 16A colocalizes_with IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:31,560,940...31,757,100
Ensembl chr 6:31,562,834...31,757,678
JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin IEA
ISS
Ensembl
UniProtKB
GO_REF:0000024, GO_REF:0000107 NCBI chr 6:18,252,543...18,266,033
Ensembl chr 6:18,254,139...18,266,033
JBrowse link
G CLTCL1 clathrin heavy chain like 1 IEA Ensembl GO_REF:0000107 NCBI chr26:29,907,235...30,002,136
Ensembl chr26:29,906,278...30,002,128
JBrowse link
G CST7 cystatin F IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr23:1,136,161...1,145,411
Ensembl chr23:1,136,258...1,144,983
JBrowse link
G CTNS cystinosin, lysosomal cystine transporter IEA Ensembl GO_REF:0000107 NCBI chr 9:47,474,488...47,490,951
Ensembl chr 9:47,473,901...47,490,252
JBrowse link
G CTSS cathepsin S IEA Ensembl GO_REF:0000107 NCBI chr17:59,893,840...59,910,878
Ensembl chr17:59,893,840...59,910,849
JBrowse link
G CXCR4 C-X-C motif chemokine receptor 4 ISS
IEA
UniProtKB
UniProt
GO_REF:0000024, GO_REF:0000044 NCBI chr19:38,874,650...38,877,740
Ensembl chr19:38,874,145...38,877,740
JBrowse link
G DDIT3 DNA damage inducible transcript 3 IEA Ensembl GO_REF:0000107 NCBI chr10:1,606,693...1,612,410
Ensembl chr10:1,606,693...1,611,303
JBrowse link
G DENND10 DENN domain containing 10 IEA UniProt GO_REF:0000044 NCBI chr28:29,325,721...29,369,218
Ensembl chr28:29,326,014...29,367,916
JBrowse link
G DERL1 derlin 1 ISO (MGI:4361100|PMID:19509052) MGI PMID:19509052 MGI:4361100 NCBI chr13:21,423,501...21,452,594
Ensembl chr13:21,419,352...21,482,133
JBrowse link
G DERL2 derlin 2 IEA Ensembl GO_REF:0000107 NCBI chr 5:31,319,660...31,330,846
Ensembl chr 5:31,319,717...31,330,841
JBrowse link
G DLA-DMA major histocompatibility complex, class II, DM alpha ISO (MGI:3033762|PMID:7985028), (MGI:3033877|PMID:7584146) MGI PMID:7584146, PMID:7985028 MGI:3033762, MGI:3033877 NCBI chr12:2,516,974...2,534,085
Ensembl chr12:2,503,325...2,533,990
JBrowse link
G DLA-DMB major histocompatibility complex, class II, DM beta ISO (MGI:3033877|PMID:7584146) MGI PMID:7584146 MGI:3033877 NCBI chr12:2,503,325...2,508,380
Ensembl chr12:2,503,325...2,533,990
JBrowse link
G DYNC1LI1 dynein cytoplasmic 1 light intermediate chain 1 colocalizes_with ISO RGD PMID:21169557 RGD:13207422 NCBI chr23:12,235,539...12,283,851
Ensembl chr23:12,235,104...12,277,031
JBrowse link
G DYNC1LI2 dynein cytoplasmic 1 light intermediate chain 2 colocalizes_with ISO RGD PMID:21169557 RGD:13207422 NCBI chr 5:82,539,880...82,566,689
Ensembl chr 5:82,539,876...82,563,905
JBrowse link
G DYSF dysferlin IEA Ensembl GO_REF:0000107 NCBI chr17:51,011,197...51,228,969
Ensembl chr17:51,011,197...51,228,876
JBrowse link
G ECPAS Ecm29 proteasome adaptor and scaffold ISO (PMID:15496406) UniProtKB PMID:15496406 NCBI chr11:66,051,414...66,141,931
Ensembl chr11:66,051,443...66,141,802
JBrowse link
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 colocalizes_with IEA
ISO
(PMID:21072319) Ensembl
BHF-UCL
PMID:21072319 GO_REF:0000107 NCBI chr 6:42,612,130...42,681,161
Ensembl chr 6:42,613,546...42,681,015
JBrowse link
G EXOC8 exocyst complex component 8 IEA Ensembl GO_REF:0000107 NCBI chr 4:8,133,526...8,138,185
Ensembl chr 4:8,133,670...8,135,853
JBrowse link
G F2R coagulation factor II thrombin receptor IEA Ensembl GO_REF:0000107 NCBI chr 3:29,870,159...29,889,837
Ensembl chr 3:29,872,155...29,889,687
JBrowse link
G FYCO1 FYVE and coiled-coil domain autophagy adaptor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:42,520,241...42,593,886
Ensembl chr20:42,525,435...42,590,243
JBrowse link
G GJA1 gap junction protein alpha 1 ISO RGD PMID:16162097 RGD:1582681 NCBI chr 1:60,941,772...60,944,694
Ensembl chr 1:60,929,097...60,942,936
JBrowse link
G GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr 8:28,992,173...29,005,511
Ensembl chr 8:28,993,227...29,005,435
JBrowse link
G GRIN2B glutamate ionotropic receptor NMDA type subunit 2B ISS UniProt GO_REF:0000024 NCBI chr27:32,470,889...32,883,606
Ensembl chr27:32,471,153...32,877,680
JBrowse link
G GRN granulin precursor IEA Ensembl GO_REF:0000107 NCBI chr 9:19,077,430...19,085,443
Ensembl chr 9:19,077,427...19,082,268
JBrowse link
G HSPA8 heat shock protein family A (Hsp70) member 8 IEA Ensembl GO_REF:0000107 NCBI chr 5:11,292,219...11,296,851
Ensembl chr 5:11,292,262...11,296,797
JBrowse link
G HTT huntingtin IEA Ensembl GO_REF:0000107 NCBI chr 3:61,076,934...61,221,462
Ensembl chr 3:61,079,904...61,330,290
JBrowse link
G IFNAR1 interferon alpha and beta receptor subunit 1 IEA UniProt GO_REF:0000044 NCBI chr31:27,955,638...27,977,272 JBrowse link
G IGF2R insulin like growth factor 2 receptor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:49,161,551...49,262,260
Ensembl chr 1:49,161,444...49,262,277
JBrowse link
G KCNQ1 potassium voltage-gated channel subfamily Q member 1 IEA Ensembl GO_REF:0000107 NCBI chr18:46,554,390...46,830,533
Ensembl chr18:46,518,908...46,830,043
JBrowse link
G KIDINS220 kinase D interacting substrate 220 ISO PMID:17724123 UniProt PMID:17724123 RGD:8554481 NCBI chr17:5,983,208...6,077,609
Ensembl chr17:5,982,938...6,071,165
JBrowse link
G LAMP1 lysosomal associated membrane protein 1 ISO (PMID:15052268), (PMID:15292400), (PMID:15792797), (PMID:16542649), (PMID:18388320), (PMID:18767904)
(MGI:2449836|PMID:12446704), (MGI:3042340|PMID:14668490), (MGI:3054306|PMID:15294975), (MGI:3615690|PMID:16415873), (MGI:3758128|PMID:17620357), (MGI:3790551|PMID:18477453), (MGI:5609900|PMID:24841562)
UniProtKB
MGI
PMID:12446704, PMID:14668490, PMID:15052268, PMID:15292400, PMID:15294975, PMID:15792797, PMID:16415873, PMID:16542649, PMID:17620357, PMID:18388320, PMID:18477453, PMID:18767904, PMID:24841562 MGI:2449836, MGI:3042340, MGI:3054306, MGI:3615690, MGI:3758128, MGI:3790551, MGI:5609900 NCBI chr22:60,678,116...60,695,619
Ensembl chr22:60,678,111...60,694,924
JBrowse link
G LAMP2 lysosomal associated membrane protein 2 ISO (PMID:15229288)
(MGI:3042340|PMID:14668490)
MGI PMID:14668490, PMID:15229288 MGI:3042340 NCBI chr  X:92,405,946...92,444,527
Ensembl chr  X:92,407,950...92,444,765
JBrowse link
G LAMP5 lysosomal associated membrane protein family member 5 ISO (MGI:5751042|PMID:25592972) MGI PMID:25592972 MGI:5751042 NCBI chr24:12,678,209...12,693,847
Ensembl chr24:12,678,837...12,694,284
JBrowse link
G LAMTOR2 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 ISO (MGI:3693387|PMID:15263099), (MGI:4887551|PMID:19177150), (MGI:5609900|PMID:24841562) MGI PMID:15263099, PMID:19177150, PMID:24841562 MGI:3693387, MGI:4887551, MGI:5609900 NCBI chr 7:41,760,632...41,764,926
Ensembl chr 7:41,760,638...41,763,299
JBrowse link
G LAMTOR3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 ISO (MGI:3693387|PMID:15263099), (MGI:4887551|PMID:19177150), (MGI:5609900|PMID:24841562) UniProt PMID:15263099, PMID:19177150, PMID:24841562 MGI:3693387, MGI:4887551, MGI:5609900 NCBI chr32:21,820,853...21,834,443
Ensembl chr32:21,820,985...21,834,351
JBrowse link
G LDLR low density lipoprotein receptor IEA Ensembl GO_REF:0000107 NCBI chr20:50,115,175...50,152,443
Ensembl chr20:50,048,736...50,152,355
JBrowse link
G LGMN legumain IEA Ensembl GO_REF:0000107 NCBI chr 8:1,810,263...1,843,116
Ensembl chr 8:1,728,273...1,843,050
JBrowse link
G LIPC lipase C, hepatic type ISO RGD PMID:14701798 RGD:1625029 NCBI chr30:23,432,460...23,584,037
Ensembl chr30:23,432,493...23,584,037
JBrowse link
G LOC477072 serotransferrin IEA Ensembl GO_REF:0000107 NCBI chr23:30,658,250...30,683,816
Ensembl chr23:30,595,704...30,683,845
JBrowse link
G LOC606863 immunity-related GTPase family M protein-like ISO (MGI:3656111|PMID:16888103), (MGI:4430426|PMID:20072621) UniProt PMID:16888103, PMID:20072621 MGI:3656111, MGI:4430426 NCBI chr11:506,981...523,338
Ensembl chr11:509,636...510,829
JBrowse link
G LOC609830 interferon alpha/beta receptor 1 IEA UniProt GO_REF:0000044 NCBI chr31:28,854,765...28,876,399 JBrowse link
G M6PR mannose-6-phosphate receptor, cation dependent IEA Ensembl GO_REF:0000107 NCBI chr27:36,787,745...36,796,194
Ensembl chr27:36,786,981...36,796,770
JBrowse link
G MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 ISO PMID:17724123 UniProt PMID:17724123 RGD:8554481 NCBI chr18:17,973,058...19,098,785
Ensembl chr18:17,918,928...18,930,059
JBrowse link
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha ISO RGD PMID:19337031 RGD:4892338 NCBI chr24:23,672,343...23,673,937
Ensembl chr24:23,633,579...23,673,921
JBrowse link
G MCOLN1 mucolipin TRP cation channel 1 ISO (PMID:21224396) UniProtKB PMID:21224396 NCBI chr20:52,318,411...52,327,389
Ensembl chr20:52,318,408...52,348,963
JBrowse link
G MFSD12 major facilitator superfamily domain containing 12 IEA Ensembl GO_REF:0000107 NCBI chr20:55,855,102...55,863,606
Ensembl chr20:55,858,687...55,862,181
JBrowse link
G MICALL1 MICAL like 1 IEA Ensembl GO_REF:0000107 NCBI chr10:26,715,572...26,738,326
Ensembl chr10:26,717,322...26,738,850
JBrowse link
G MTM1 myotubularin 1 IEA UniProt GO_REF:0000044 NCBI chr  X:118,820,644...118,917,166
Ensembl chr  X:118,820,494...118,916,368
JBrowse link
G MVB12B multivesicular body subunit 12B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:56,721,599...56,908,723
Ensembl chr 9:56,707,258...56,907,716
JBrowse link
G MYO5A myosin VA colocalizes_with ISO
IEA
(PMID:24006491) UniProtKB
Ensembl
PMID:24006491 GO_REF:0000107 NCBI chr30:17,990,521...18,122,160
Ensembl chr30:17,888,419...18,213,061
JBrowse link
G MYO5C myosin VC IEA Ensembl GO_REF:0000107 NCBI chr30:17,888,422...17,972,365
Ensembl chr30:17,888,419...18,213,061
JBrowse link
G NBR1 NBR1 autophagy cargo receptor IEA Ensembl GO_REF:0000107 NCBI chr 9:19,926,885...19,959,552
Ensembl chr 9:19,915,973...19,958,789
JBrowse link
G NMNAT2 nicotinamide nucleotide adenylyltransferase 2 IEA Ensembl GO_REF:0000107 NCBI chr 7:16,626,213...16,819,681
Ensembl chr 7:16,631,116...16,805,457
JBrowse link
G NSG1 neuronal vesicle trafficking associated 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:69,805,646...69,831,200
Ensembl chr 3:69,805,592...69,831,194
JBrowse link
G NSG2 neuronal vesicle trafficking associated 2 ISO PMID:28874679 UniProt PMID:28874679 RGD:13432228 NCBI chr 4:38,491,995...38,550,672
Ensembl chr 4:38,491,989...38,550,619
JBrowse link
G NTRK1 neurotrophic receptor tyrosine kinase 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:41,140,931...41,159,326
Ensembl chr 7:41,140,879...41,159,288
JBrowse link
G OSBPL1A oxysterol binding protein like 1A IEA Ensembl GO_REF:0000107 NCBI chr 7:63,995,570...64,223,213
Ensembl chr 7:63,995,184...64,222,157
JBrowse link
G PCSK9 proprotein convertase subtilisin/kexin type 9 ISO (PMID:17461796), (PMID:18039658) UniProtKB PMID:17461796, PMID:18039658 NCBI chr 5:54,197,211...54,210,724 JBrowse link
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 IEA Ensembl GO_REF:0000107 NCBI chr 7:48,663,381...48,800,350
Ensembl chr 7:48,663,381...48,800,437
JBrowse link
G PIK3R4 phosphoinositide-3-kinase regulatory subunit 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr23:27,902,500...27,973,609
Ensembl chr23:27,902,840...27,971,892
JBrowse link
G PSAP prosaposin IEA Ensembl GO_REF:0000107 NCBI chr 4:22,571,095...22,603,880
Ensembl chr 4:22,572,153...22,603,848
JBrowse link
G RAB14 RAB14, member RAS oncogene family ISO PMID:15004230 UniProt PMID:15004230 RGD:8554557 NCBI chr11:74,157,497...74,172,817
Ensembl chr11:74,159,414...74,172,810
JBrowse link
G RAB22A RAB22A, member RAS oncogene family IEA UniProt GO_REF:0000044 NCBI chr24:43,109,489...43,157,932
Ensembl chr24:43,108,918...43,157,932
JBrowse link
G RAB27A RAB27A, member RAS oncogene family ISS UniProt GO_REF:0000024 NCBI chr30:20,633,576...20,706,240
Ensembl chr30:20,635,400...20,690,521
JBrowse link
G RAB27B RAB27B, member RAS oncogene family ISO (PMID:30771381) UniProt PMID:30771381 NCBI chr 1:20,695,100...20,832,745
Ensembl chr 1:20,700,514...20,832,975
JBrowse link
G RAB31 RAB31, member RAS oncogene family colocalizes_with ISO RGD PMID:11746448 RGD:2316821 NCBI chr 7:75,678,896...75,807,716
Ensembl chr 7:75,678,908...75,817,426
JBrowse link
G RAB34 RAB34, member RAS oncogene family ISO (MGI:5467668|PMID:23197834) ParkinsonsUK-UCL PMID:23197834 MGI:5467668 NCBI chr 9:42,909,843...42,913,935
Ensembl chr 9:42,910,011...42,913,985
JBrowse link
G RAB7A RAB7A, member RAS oncogene family colocalizes_with ISS
IBA
ISO
(PMID:21873635)
(PMID:18272684)
UniProtKB
GO_Central
BHF-UCL
PMID:18272684, PMID:21873635 GO_REF:0000024 NCBI chr20:2,704,716...2,776,518
Ensembl chr20:2,704,752...2,826,636
JBrowse link
G RAB7B RAB7B, member RAS oncogene family IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr38:2,333,939...2,359,531
Ensembl chr38:2,335,535...2,359,469
JBrowse link
G RAB9A RAB9A, member RAS oncogene family IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:10,072,764...10,124,620
Ensembl chr  X:10,102,387...10,124,620
JBrowse link
G RAB9B RAB9B, member RAS oncogene family IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:77,228,609...77,238,344
Ensembl chr  X:77,231,441...77,239,001
JBrowse link
G RAP1A RAP1A, member of RAS oncogene family ISO PMID:17724123 UniProt PMID:17724123 RGD:8554481 NCBI chr17:63,725,812...63,795,359
Ensembl chr17:63,726,248...63,746,881
JBrowse link
G RAPGEF2 Rap guanine nucleotide exchange factor 2 ISS
IEA
UniProtKB
UniProt
GO_REF:0000024, GO_REF:0000044 NCBI chr15:56,133,094...56,353,609
Ensembl chr15:56,174,578...56,352,569
JBrowse link
G RHOB ras homolog family member B IEA Ensembl GO_REF:0000107 NCBI chr17:15,438,744...15,439,793
Ensembl chr17:15,439,143...15,441,136
JBrowse link
G RILP Rab interacting lysosomal protein IEA Ensembl GO_REF:0000107 NCBI chr 9:45,793,324...45,797,159
Ensembl chr 9:45,793,623...45,796,877
JBrowse link
G RNF128 ring finger protein 128 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:80,241,285...80,356,094
Ensembl chr  X:80,241,522...80,356,110
JBrowse link
G RUBCN rubicon autophagy regulator IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr33:28,947,439...29,011,737
Ensembl chr33:28,946,944...29,009,346
JBrowse link
G RUFY1 RUN and FYVE domain containing 1 NOT ISO (MGI:2387806|PMID:11172003) MGI PMID:11172003 MGI:2387806 NCBI chr11:2,062,623...2,127,613
Ensembl chr11:2,052,901...2,127,746
JBrowse link
G SDF4 stromal cell derived factor 4 IEA Ensembl GO_REF:0000107 NCBI chr 5:56,407,506...56,421,515
Ensembl chr 5:56,407,807...56,421,430
JBrowse link
G SIGLEC1 sialic acid binding Ig like lectin 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:17,636,143...17,667,791
Ensembl chr24:17,636,026...17,666,854
JBrowse link
G SLA2 Src like adaptor 2 IEA Ensembl GO_REF:0000107 NCBI chr24:25,396,187...25,426,789
Ensembl chr24:25,396,900...25,422,467
JBrowse link
G SLC11A1 solute carrier family 11 member 1 IEA Ensembl GO_REF:0000107 NCBI chr37:25,039,203...25,047,461
Ensembl chr37:25,038,360...25,047,282
JBrowse link
G SLC11A2 solute carrier family 11 member 2 ISO (PMID:12475959), (PMID:15792797), (PMID:18776082) UniProtKB PMID:12475959, PMID:15792797, PMID:18776082 NCBI chr27:3,788,785...3,823,852
Ensembl chr27:3,787,855...3,822,672
JBrowse link
G SLC30A2 solute carrier family 30 member 2 IEA Ensembl GO_REF:0000107 NCBI chr 2:73,922,443...73,929,924
Ensembl chr 2:73,921,878...73,928,874
JBrowse link
G SLC30A3 solute carrier family 30 member 3 IEA Ensembl GO_REF:0000107 NCBI chr17:21,230,918...21,239,598
Ensembl chr17:21,231,611...21,239,564
JBrowse link
G SLC30A4 solute carrier family 30 member 4 IEA Ensembl GO_REF:0000107 NCBI chr30:11,827,719...11,859,413
Ensembl chr30:11,834,678...11,859,311
JBrowse link
G SLC31A1 solute carrier family 31 member 1 IEA Ensembl GO_REF:0000107 NCBI chr11:67,590,087...67,628,947
Ensembl chr11:67,591,080...67,625,798
JBrowse link
G SLC31A2 solute carrier family 31 member 2 IEA Ensembl GO_REF:0000107 NCBI chr11:67,522,316...67,531,215
Ensembl chr11:67,526,465...67,529,976
JBrowse link
G SLC38A9 solute carrier family 38 member 9 ISO (PMID:25561175) UniProtKB PMID:25561175 NCBI chr 2:42,921,906...43,004,265
Ensembl chr 2:42,922,494...42,991,577
JBrowse link
G SLC9A6 solute carrier family 9 member A6 IEA Ensembl GO_REF:0000107 NCBI chr  X:106,408,789...106,465,504
Ensembl chr  X:106,398,850...106,463,252
JBrowse link
G SNX14 sorting nexin 14 IEA Ensembl GO_REF:0000107 NCBI chr12:45,526,042...45,598,868
Ensembl chr12:45,518,721...45,599,012
JBrowse link
G SNX16 sorting nexin 16 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr29:28,882,768...28,922,713
Ensembl chr29:28,884,426...28,920,797
JBrowse link
G SPPL2A signal peptide peptidase like 2A ISO (PMID:16829952) UniProtKB PMID:16829952 NCBI chr30:16,593,834...16,638,435
Ensembl chr30:16,596,967...16,745,608
JBrowse link
G SRC SRC proto-oncogene, non-receptor tyrosine kinase IEA Ensembl GO_REF:0000107 NCBI chr24:25,982,499...26,019,748
Ensembl chr24:25,999,048...26,018,077
JBrowse link
G STX7 syntaxin 7 IEA Ensembl GO_REF:0000107 NCBI chr 1:25,544,283...25,607,179
Ensembl chr 1:25,546,596...25,607,231
JBrowse link
G STX8 syntaxin 8 IEA Ensembl GO_REF:0000107 NCBI chr 5:33,834,218...34,091,827
Ensembl chr 5:33,834,279...34,091,757
JBrowse link
G TCIRG1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 IEA Ensembl GO_REF:0000107 NCBI chr18:49,784,480...49,794,361
Ensembl chr18:49,784,490...49,794,317
JBrowse link
G TF transferrin IEA Ensembl GO_REF:0000107 NCBI chr23:30,578,853...30,634,510
Ensembl chr23:30,595,704...30,683,845
JBrowse link
G TICAM2 toll like receptor adaptor molecule 2 ISO (PMID:19412184) UniProtKB PMID:19412184 NCBI chr11:5,312,383...5,313,099
Ensembl chr11:5,312,383...5,313,099
JBrowse link
G TMED7 transmembrane p24 trafficking protein 7 ISO (PMID:19412184) UniProtKB PMID:19412184 NCBI chr11:5,342,265...5,356,828
Ensembl chr11:5,342,265...5,356,828
JBrowse link
G TMEM106A transmembrane protein 106A IEA Ensembl GO_REF:0000107 NCBI chr 9:19,917,591...19,926,578
Ensembl chr 9:19,915,973...19,958,789
JBrowse link
G TMEM192 transmembrane protein 192 IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000044 NCBI chr15:61,088,944...61,110,426
Ensembl chr15:61,090,399...61,110,762
JBrowse link
G TMEM230 transmembrane protein 230 IEA Ensembl GO_REF:0000107 NCBI chr24:16,486,514...16,496,180
Ensembl chr24:16,486,574...16,495,491
JBrowse link
G TMEM25 transmembrane protein 25 IEA Ensembl GO_REF:0000107 NCBI chr 5:15,202,726...15,207,252
Ensembl chr 5:15,203,974...15,206,704
JBrowse link
G TMEM59 transmembrane protein 59 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 5:54,959,895...54,991,978
Ensembl chr 5:54,960,069...54,987,758
JBrowse link
G TMEM9 transmembrane protein 9 ISO (PMID:12359240) UniProtKB PMID:12359240 NCBI chr 7:2,069,017...2,087,961 JBrowse link
G TRAPPC9 trafficking protein particle complex 9 NOT ISO (MGI:4438815|PMID:20004763) MGI PMID:20004763 MGI:4438815 NCBI chr13:34,579,134...35,115,508
Ensembl chr13:34,579,126...35,115,494
JBrowse link
G TSG101 tumor susceptibility 101 IEA Ensembl GO_REF:0000107 NCBI chr21:40,910,870...40,952,922
Ensembl chr21:40,910,874...40,952,808
JBrowse link
G TTPA alpha tocopherol transfer protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr29:13,177,690...13,198,910
Ensembl chr29:13,182,308...13,192,553
JBrowse link
G UVRAG UV radiation resistance associated IEA Ensembl GO_REF:0000107 NCBI chr21:22,505,968...22,821,027
Ensembl chr21:22,507,162...22,820,824
JBrowse link
G VAMP5 vesicle associated membrane protein 5 ISO (MGI:1858282|PMID:9725904) BHF-UCL PMID:9725904 MGI:1858282 NCBI chr17:39,488,877...39,495,795
Ensembl chr17:39,488,938...39,495,730
JBrowse link
G VIPAS39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog IEA Ensembl GO_REF:0000107 NCBI chr 8:50,233,162...50,258,030
Ensembl chr 8:50,233,917...50,254,507
JBrowse link
G VPS11 VPS11 core subunit of CORVET and HOPS complexes colocalizes_with ISO (PMID:21148287)
(PMID:11382755)
UniProtKB PMID:11382755, PMID:21148287 NCBI chr 5:14,776,975...14,786,736
Ensembl chr 5:14,776,976...14,786,692
JBrowse link
G VPS16 VPS16 core subunit of CORVET and HOPS complexes ISO (PMID:11382755), (PMID:19109425) UniProtKB PMID:11382755, PMID:19109425 NCBI chr24:18,401,440...18,424,605
Ensembl chr24:18,399,572...18,424,510
JBrowse link
G VPS18 VPS18 core subunit of CORVET and HOPS complexes IEA Ensembl GO_REF:0000107 NCBI chr30:8,027,877...8,036,773
Ensembl chr30:8,027,128...8,036,153
JBrowse link
G VPS26B VPS26, retromer complex component B IEA Ensembl GO_REF:0000107 NCBI chr 5:1,000,035...1,020,195
Ensembl chr 5:999,392...1,020,196
JBrowse link
G VPS33A VPS33A core subunit of CORVET and HOPS complexes ISO (PMID:19109425) UniProtKB PMID:19109425 NCBI chr26:7,090,669...7,119,913 JBrowse link
G VPS33B VPS33B late endosome and lysosome associated ISO (PMID:15052268) UniProtKB PMID:15052268 NCBI chr 3:53,220,199...53,239,738
Ensembl chr 3:53,220,194...53,239,732
JBrowse link
G VPS35 VPS35 retromer complex component IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:8,428,073...8,454,601
Ensembl chr15:8,428,172...8,454,049
JBrowse link
G VPS36 vacuolar protein sorting 36 homolog ISO (MGI:3582124|PMID:15755741) MGI PMID:15755741 MGI:3582124 NCBI chr25:150,984...191,531
Ensembl chr25:150,150...191,544
JBrowse link
G VPS41 VPS41 subunit of HOPS complex IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000044 NCBI chr18:10,788,846...10,956,207
Ensembl chr18:10,788,891...10,955,645
JBrowse link
G VPS4A vacuolar protein sorting 4 homolog A ISO (PMID:10637304), (PMID:15075231) UniProtKB PMID:10637304, PMID:15075231 NCBI chr 5:80,327,059...80,340,380 JBrowse link
G WASHC1 WASH complex subunit 1 IEA Ensembl GO_REF:0000107 NCBI chr27:42,102,694...42,118,850
Ensembl chr27:42,099,886...42,116,339
JBrowse link
G WDR48 WD repeat domain 48 IEA UniProt GO_REF:0000044 NCBI chr23:8,716,598...8,766,242
Ensembl chr23:8,715,700...8,764,678
JBrowse link
G ZC3HAV1 zinc finger CCCH-type containing, antiviral 1 ISO (MGI:5499037|PMID:23776219) MGI PMID:23776219 MGI:5499037 NCBI chr16:9,598,339...9,660,540
Ensembl chr16:9,598,405...9,664,569
JBrowse link
cytoplasmic side of late endosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDIP1 cell death inducing p53 target 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:36,854,124...36,880,231
Ensembl chr 6:36,854,141...36,880,230
JBrowse link
G LITAF lipopolysaccharide induced TNF factor IEA Ensembl GO_REF:0000107 NCBI chr 6:31,229,153...31,259,670 JBrowse link
late endosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABHD6 abhydrolase domain containing 6, acylglycerol lipase IEA Ensembl GO_REF:0000107 NCBI chr20:32,301,120...32,331,030
Ensembl chr20:32,302,104...32,330,998
JBrowse link
G ANXA2 annexin A2 IEA Ensembl GO_REF:0000107 NCBI chr30:25,176,845...25,210,244
Ensembl chr30:25,115,842...25,218,281
JBrowse link
G ANXA6 annexin A6 IEA Ensembl GO_REF:0000107 NCBI chr 4:58,091,186...58,140,102
Ensembl chr 4:58,091,251...58,139,372
JBrowse link
G ANXA8L1 annexin A8-like 1 ISO (PMID:18923148) UniProtKB PMID:18923148 NCBI chr 4:34,862,992...34,878,535 JBrowse link
G AP5M1 adaptor related protein complex 5 subunit mu 1 IEA UniProt GO_REF:0000044 NCBI chr 4:79,914,436...79,982,053
Ensembl chr 8:32,848,205...32,902,815
JBrowse link
G BAIAP3 BAI1 associated protein 3 ISO (PMID:28626000) UniProtKB PMID:28626000 NCBI chr 6:39,421,019...39,434,539
Ensembl chr 6:39,427,520...39,435,596
JBrowse link
G CD63 CD63 molecule IEA UniProt GO_REF:0000044 NCBI chr10:126,370...139,301
Ensembl chr10:126,449...129,742
JBrowse link
G CLCN3 chloride voltage-gated channel 3 IEA UniProt GO_REF:0000044 NCBI chr25:20,528,708...20,616,687
Ensembl chr25:20,528,699...20,615,070
JBrowse link
G CYB561A3 cytochrome b561 family member A3 IEA Ensembl GO_REF:0000107 NCBI chr18:55,039,788...55,049,739
Ensembl chr18:55,043,942...55,049,143
JBrowse link
G DLA-DRA MHC class II DR alpha chain IEA Ensembl GO_REF:0000107 NCBI chr12:2,133,026...2,137,825
Ensembl chr12:2,132,499...2,168,975
JBrowse link
G GOSR2 golgi SNAP receptor complex member 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:10,201,625...10,220,688 JBrowse link
G HLA-DRB1 MHC class II DLA DRB1 beta chain ISO (PMID:18305173) UniProtKB PMID:18305173 NCBI chr12:2,151,409...2,164,564 JBrowse link
G LAMP1 lysosomal associated membrane protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr22:60,678,116...60,695,619
Ensembl chr22:60,678,111...60,694,924
JBrowse link
G LAMP2 lysosomal associated membrane protein 2 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr  X:92,405,946...92,444,527
Ensembl chr  X:92,407,950...92,444,765
JBrowse link
G LAMP5 lysosomal associated membrane protein family member 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:12,678,209...12,693,847
Ensembl chr24:12,678,837...12,694,284
JBrowse link
G LAMTOR1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 ISO PMID:19177150 UniProt PMID:19177150 RGD:8553879 NCBI chr21:25,981,170...25,986,942
Ensembl chr21:25,981,254...25,996,432
JBrowse link
G LAMTOR2 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 IEA UniProt GO_REF:0000044 NCBI chr 7:41,760,632...41,764,926
Ensembl chr 7:41,760,638...41,763,299
JBrowse link
G LAPTM4A lysosomal protein transmembrane 4 alpha IEA Ensembl GO_REF:0000107 NCBI chr17:15,066,326...15,081,562
Ensembl chr17:15,066,885...15,080,752
JBrowse link
G LAPTM4B lysosomal protein transmembrane 4 beta ISO (PMID:21224396), (PMID:22096579), (PMID:25588945) UniProtKB PMID:21224396, PMID:22096579, PMID:25588945 NCBI chr13:41,134...127,399
Ensembl chr13:41,121...127,182
JBrowse link
G LOC106559493 small regulatory polypeptide of amino acid response-like ISO (PMID:28024296) UniProtKB PMID:28024296 NCBI chr11:52,424,607...52,427,288
Ensembl chr11:52,426,076...52,426,303
JBrowse link
G MARCHF1 membrane associated ring-CH-type finger 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:59,753,597...60,279,692
Ensembl chr15:59,753,216...60,036,060
JBrowse link
G MARCHF8 membrane associated ring-CH-type finger 8 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:2,006,923...2,165,491
Ensembl chr28:2,072,181...2,161,981
JBrowse link
G MR1 major histocompatibility complex, class I-related ISO (PMID:27043408) UniProt PMID:27043408 NCBI chr 7:14,521,735...14,531,296 JBrowse link
G MREG melanoregulin IEA Ensembl GO_REF:0000107 NCBI chr37:22,958,890...22,999,955
Ensembl chr37:22,960,321...23,018,600
JBrowse link
G MVB12A multivesicular body subunit 12A IEA UniProt GO_REF:0000044 NCBI chr20:45,365,850...45,370,114
Ensembl chr20:45,365,852...45,370,014
JBrowse link
G MVB12B multivesicular body subunit 12B IEA UniProt GO_REF:0000044 NCBI chr 9:56,721,599...56,908,723
Ensembl chr 9:56,707,258...56,907,716
JBrowse link
G OSGEP O-sialoglycoprotein endopeptidase IEA UniProt GO_REF:0000044 NCBI chr15:17,780,474...17,786,452
Ensembl chr15:17,780,476...17,811,173
JBrowse link
G PIP4P1 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1 ISO (PMID:16365287)
(MGI:6144310|PMID:29378918)
FlyBase
UniProt
PMID:16365287, PMID:29378918 MGI:6144310 NCBI chr15:17,789,511...17,793,226 JBrowse link
G PIP4P2 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 IEA UniProt GO_REF:0000044 NCBI chr29:36,376,211...36,410,680
Ensembl chr29:36,377,413...36,419,132
JBrowse link
G PLD3 phospholipase D family member 3 IEA Ensembl GO_REF:0000107 NCBI chr 1:113,305,146...113,322,705
Ensembl chr 1:113,305,445...113,312,632
JBrowse link
G RAB7A RAB7A, member RAS oncogene family ISS
IEA
GO_Central
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr20:2,704,716...2,776,518
Ensembl chr20:2,704,752...2,826,636
JBrowse link
G RMC1 regulator of MON1-CCZ1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 7:64,802,506...64,819,383
Ensembl chr 7:64,802,557...64,819,510
JBrowse link
G RNF13 ring finger protein 13 IEA Ensembl GO_REF:0000107 NCBI chr23:44,480,595...44,683,114
Ensembl chr23:44,529,389...44,682,111
JBrowse link
G SLC11A2 solute carrier family 11 member 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:3,788,785...3,823,852
Ensembl chr27:3,787,855...3,822,672
JBrowse link
G SLC39A14 solute carrier family 39 member 14 IEA Ensembl GO_REF:0000107 NCBI chr25:34,854,371...34,901,030
Ensembl chr25:34,846,653...34,869,695
JBrowse link
G SNF8 SNF8 subunit of ESCRT-II IEA Ensembl GO_REF:0000107 NCBI chr 9:25,151,992...25,162,105
Ensembl chr 9:25,152,011...25,162,023
JBrowse link
G SPPL2A signal peptide peptidase like 2A IEA Ensembl GO_REF:0000107 NCBI chr30:16,593,834...16,638,435
Ensembl chr30:16,596,967...16,745,608
JBrowse link
G STARD3 StAR related lipid transfer domain containing 3 IEA UniProt GO_REF:0000044 NCBI chr 9:22,814,782...22,837,525
Ensembl chr 9:22,814,460...22,837,426
JBrowse link
G STARD3NL STARD3 N-terminal like IEA UniProt GO_REF:0000044 NCBI chr18:11,732,949...11,784,241
Ensembl chr18:11,733,368...11,784,248
JBrowse link
G STX7 syntaxin 7 ISO RGD PMID:15133481 RGD:4892614 NCBI chr 1:25,544,283...25,607,179
Ensembl chr 1:25,546,596...25,607,231
JBrowse link
G STX8 syntaxin 8 ISO RGD PMID:15133481 RGD:4892614 NCBI chr 5:33,834,218...34,091,827
Ensembl chr 5:33,834,279...34,091,757
JBrowse link
G UBXN6 UBX domain protein 6 IEA Ensembl GO_REF:0000107 NCBI chr20:55,228,026...55,246,333
Ensembl chr20:55,227,729...55,245,940
JBrowse link
G VAMP7 vesicle associated membrane protein 7 ISO PMID:10459012 RGD
UniProt
PMID:10459012, PMID:15133481 RGD:4892614, RGD:8554473 NCBI chr  X:123,717,524...123,783,781
Ensembl chr  X:123,717,446...123,783,014
JBrowse link
G VAMP8 vesicle associated membrane protein 8 ISO (PMID:23217709) RGD
UniProtKB
PMID:15133481, PMID:23217709 RGD:4892614 NCBI chr17:39,497,628...39,501,734
Ensembl chr17:39,497,785...39,501,739
JBrowse link
G VPS11 VPS11 core subunit of CORVET and HOPS complexes IEA UniProt GO_REF:0000044 NCBI chr 5:14,776,975...14,786,736
Ensembl chr 5:14,776,976...14,786,692
JBrowse link
G VPS16 VPS16 core subunit of CORVET and HOPS complexes IEA UniProt GO_REF:0000044 NCBI chr24:18,401,440...18,424,605
Ensembl chr24:18,399,572...18,424,510
JBrowse link
G VPS33A VPS33A core subunit of CORVET and HOPS complexes IEA UniProt GO_REF:0000044 NCBI chr26:7,090,669...7,119,913 JBrowse link
G VPS33B VPS33B late endosome and lysosome associated IEA UniProt GO_REF:0000044 NCBI chr 3:53,220,199...53,239,738
Ensembl chr 3:53,220,194...53,239,732
JBrowse link
G VPS36 vacuolar protein sorting 36 homolog IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr25:150,984...191,531
Ensembl chr25:150,150...191,544
JBrowse link
G VPS37A VPS37A subunit of ESCRT-I IEA UniProt GO_REF:0000044 NCBI chr16:40,571,892...40,624,359
Ensembl chr16:40,571,892...40,620,885
JBrowse link
G VPS37B VPS37B subunit of ESCRT-I IEA UniProt GO_REF:0000044 NCBI chr26:6,594,981...6,621,902
Ensembl chr26:6,595,030...6,620,408
JBrowse link
G VPS37C VPS37C subunit of ESCRT-I IEA UniProt GO_REF:0000044 NCBI chr18:55,204,918...55,212,902
Ensembl chr18:55,205,469...55,212,505
JBrowse link
G VPS37D VPS37D subunit of ESCRT-I IEA UniProt GO_REF:0000044 NCBI chr 6:6,602,905...6,606,781
Ensembl chr 6:6,603,627...6,607,029
JBrowse link
G VPS39 VPS39 subunit of HOPS complex IEA Ensembl GO_REF:0000107 NCBI chr30:9,166,510...9,213,806
Ensembl chr30:9,166,656...9,213,629
JBrowse link
G VPS41 VPS41 subunit of HOPS complex IEA Ensembl GO_REF:0000107 NCBI chr18:10,788,846...10,956,207
Ensembl chr18:10,788,891...10,955,645
JBrowse link
G VTI1A vesicle transport through interaction with t-SNAREs 1A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:23,496,553...23,854,609
Ensembl chr28:23,496,593...23,842,369
JBrowse link
G VTI1B vesicle transport through interaction with t-SNAREs 1B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:41,619,365...41,650,389
Ensembl chr29:19,153,616...19,154,245
Ensembl chr 8:19,153,616...19,154,245
JBrowse link
G WDR81 WD repeat domain 81 IEA Ensembl GO_REF:0000107 NCBI chr 9:45,860,200...45,875,439
Ensembl chr 9:45,859,455...45,875,439
JBrowse link
G WDR91 WD repeat domain 91 IEA UniProt GO_REF:0000044 NCBI chr16:12,964,967...12,991,851
Ensembl chr16:12,965,140...12,995,345
JBrowse link
G YIPF1 Yip1 domain family member 1 IEA UniProt GO_REF:0000044 NCBI chr 5:55,118,572...55,154,653
Ensembl chr 5:55,118,458...55,154,236
JBrowse link
G YIPF2 Yip1 domain family member 2 IEA UniProt GO_REF:0000044 NCBI chr20:50,326,437...50,331,038
Ensembl chr20:50,325,271...50,331,031
JBrowse link
Mon1-Ccz1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCZ1 CCZ1 homolog, vacuolar protein trafficking and biogenesis associated IEA InterPro GO_REF:0000002 NCBI chr 6:11,319,191...11,350,018 JBrowse link
G MON1A MON1 homolog A, secretory trafficking associated IEA Ensembl GO_REF:0000107 NCBI chr20:39,368,757...39,383,175
Ensembl chr20:39,378,694...39,383,175
JBrowse link
G MON1B MON1 homolog B, secretory trafficking associated IEA Ensembl GO_REF:0000107 NCBI chr 5:73,973,753...73,985,471
Ensembl chr 5:73,976,545...73,998,255
JBrowse link
G RMC1 regulator of MON1-CCZ1 IEA
IBA
(PMID:21873635) InterPro
Ensembl
GO_Central
PMID:21873635 GO_REF:0000002, GO_REF:0000107 NCBI chr 7:64,802,506...64,819,383
Ensembl chr 7:64,802,557...64,819,510
JBrowse link
multivesicular body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACP3 acid phosphatase 3 ISO RGD PMID:977936 RGD:2299977 NCBI chr23:29,294,641...29,353,970
Ensembl chr23:29,294,843...29,343,499
JBrowse link
G ATP13A2 ATPase cation transporting 13A2 IEA Ensembl GO_REF:0000107 NCBI chr 2:81,196,355...81,215,736
Ensembl chr 2:81,196,463...81,215,689
JBrowse link
G BACE1 beta-secretase 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:16,308,953...16,319,100
Ensembl chr 5:16,308,944...16,319,100
JBrowse link
G BST2 bone marrow stromal cell antigen 2 ISO (PMID:22072966) CACAO PMID:22072966 NCBI chr20:45,383,757...45,387,420
Ensembl chr20:45,383,915...45,387,178
JBrowse link
G CD63 CD63 molecule IEA UniProt GO_REF:0000044 NCBI chr10:126,370...139,301
Ensembl chr10:126,449...129,742
JBrowse link
G CD74 CD74 molecule IEA Ensembl GO_REF:0000107 NCBI chr 4:58,689,745...58,698,421
Ensembl chr 4:58,689,752...58,698,151
JBrowse link
G CD79A CD79a molecule IEA Ensembl GO_REF:0000107 NCBI chr 1:112,411,281...112,414,827
Ensembl chr 1:112,411,281...112,427,381
JBrowse link
G CHMP1A charged multivesicular body protein 1A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:63,897,544...63,906,515
Ensembl chr 5:63,897,594...63,905,550
JBrowse link
G CHMP2A charged multivesicular body protein 2A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:99,405,322...99,408,257
Ensembl chr 1:99,405,337...99,410,163
JBrowse link
G CHMP2B charged multivesicular body protein 2B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr31:789,586...817,925
Ensembl chr31:791,139...817,895
JBrowse link
G CHMP4B charged multivesicular body protein 4B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:22,995,677...23,050,084
Ensembl chr24:22,995,672...23,049,287
JBrowse link
G CHMP4C charged multivesicular body protein 4C IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr29:28,839,459...28,865,793
Ensembl chr29:28,839,516...28,865,023
JBrowse link
G CHMP5 charged multivesicular body protein 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:50,363,488...50,376,081 JBrowse link
G CHMP6 charged multivesicular body protein 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:997,951...1,001,659
Ensembl chr 9:998,653...1,002,538
JBrowse link
G CHMP7 charged multivesicular body protein 7 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:34,242,671...34,257,268
Ensembl chr25:34,244,022...34,257,211
JBrowse link
G CRHBP corticotropin releasing hormone binding protein ISO RGD PMID:10524337 RGD:5490549 NCBI chr 3:29,726,316...29,737,748
Ensembl chr 3:29,705,031...29,758,111
JBrowse link
G CST7 cystatin F IEA Ensembl GO_REF:0000107 NCBI chr23:1,136,161...1,145,411
Ensembl chr23:1,136,258...1,144,983
JBrowse link
G DLA-DMA major histocompatibility complex, class II, DM alpha ISO (MGI:3033879|PMID:11854359) MGI PMID:11854359 MGI:3033879 NCBI chr12:2,516,974...2,534,085
Ensembl chr12:2,503,325...2,533,990
JBrowse link
G DLA-DMB major histocompatibility complex, class II, DM beta ISO (MGI:3033879|PMID:11854359) MGI PMID:11854359 MGI:3033879 NCBI chr12:2,503,325...2,508,380
Ensembl chr12:2,503,325...2,533,990
JBrowse link
G ECPAS Ecm29 proteasome adaptor and scaffold ISO (PMID:20682791) UniProtKB PMID:20682791 NCBI chr11:66,051,414...66,141,931
Ensembl chr11:66,051,443...66,141,802
JBrowse link
G GJA1 gap junction protein alpha 1 ISO RGD PMID:16162097 RGD:1582681 NCBI chr 1:60,941,772...60,944,694
Ensembl chr 1:60,929,097...60,942,936
JBrowse link
G LAMP1 lysosomal associated membrane protein 1 IEA Ensembl GO_REF:0000107 NCBI chr22:60,678,116...60,695,619
Ensembl chr22:60,678,111...60,694,924
JBrowse link
G LOC100856137 HLA class II histocompatibility antigen, DQ beta 2 chain IEA Ensembl GO_REF:0000107 NCBI chr12:2,244,820...2,250,822
Ensembl chr12:2,244,820...2,251,662
JBrowse link
G LOC607874 cystatin-C-like ISO RGD PMID:10950881 RGD:2306514 NCBI chr23:49,562...53,618 JBrowse link
G LOC610380 corticotropin-releasing factor receptor 1 ISO Purkinje cells beginning postnatal day 3 RGD PMID:12911751 RGD:1626245 NCBI chr 9:9,708,696...9,763,281 JBrowse link
G LOC610540 pulmonary surfactant-associated protein A-like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:29,430,139...29,434,640 JBrowse link
G LRAT lecithin retinol acyltransferase ISO RGD PMID:18544127 RGD:6893660 NCBI chr15:52,399,773...52,409,590
Ensembl chr15:52,399,544...52,406,176
JBrowse link
G PRKAR1A protein kinase cAMP-dependent type I regulatory subunit alpha IEA Ensembl GO_REF:0000107 NCBI chr 9:15,180,940...15,203,035
Ensembl chr 9:15,181,393...15,200,683
JBrowse link
G PRKAR1B protein kinase cAMP-dependent type I regulatory subunit beta IEA Ensembl GO_REF:0000107 NCBI chr 6:16,135,406...16,248,567
Ensembl chr 6:16,135,715...16,247,465
JBrowse link
G RAB11A RAB11A, member RAS oncogene family IEA Ensembl GO_REF:0000107 NCBI chr30:30,200,831...30,218,412
Ensembl chr30:30,200,831...30,218,411
JBrowse link
G RPS19 ribosomal protein S19 IEA Ensembl GO_REF:0000107 NCBI chr 1:112,418,800...112,427,445
Ensembl chr 1:112,411,281...112,427,381
JBrowse link
G SFTPB surfactant protein B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:39,419,305...39,428,513
Ensembl chr17:39,386,584...39,426,229
JBrowse link
G SFTPC surfactant protein C ISO RGD PMID:16187065 RGD:4143471 NCBI chr25:35,088,295...35,090,995
Ensembl chr25:35,088,279...35,091,457
JBrowse link
G SFTPD surfactant protein D IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:29,394,755...29,407,499
Ensembl chr 4:29,394,678...29,407,293
JBrowse link
G SLC17A8 solute carrier family 17 member 8 ISO RGD PMID:12388773 RGD:625707 NCBI chr15:39,443,790...39,489,988
Ensembl chr15:39,443,518...39,486,595
JBrowse link
G SLC2A4 solute carrier family 2 member 4 ISO RGD PMID:1881917 RGD:2306204 NCBI chr 5:32,238,095...32,244,022
Ensembl chr 5:32,238,095...32,244,021
JBrowse link
G SORL1 sortilin related receptor 1 ISO (PMID:21385844) RGD
UniProt
PMID:16452683, PMID:21385844 RGD:1581100 NCBI chr 5:12,493,750...12,650,530
Ensembl chr 5:12,431,377...12,650,784
JBrowse link
G STEAP3 STEAP3 metalloreductase IEA Ensembl GO_REF:0000107 NCBI chr19:30,745,910...30,795,310
Ensembl chr19:30,747,921...30,795,338
JBrowse link
G TPT1 tumor protein, translationally-controlled 1 ISO (PMID:15319436) MGI PMID:15319436 NCBI chr22:5,711,076...5,715,254
Ensembl chr22:5,711,071...5,715,069
JBrowse link
G VTA1 vesicle trafficking 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:33,830,300...33,895,865
Ensembl chr 1:33,830,313...33,895,073
JBrowse link
G ZP2 zona pellucida glycoprotein 2 ISS
IEA
UniProtKB
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr 6:24,230,202...24,242,441
Ensembl chr 6:24,230,201...24,242,451
JBrowse link
multivesicular body membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD63 CD63 molecule IEA Ensembl GO_REF:0000107 NCBI chr10:126,370...139,301
Ensembl chr10:126,449...129,742
JBrowse link
G LAPTM4B lysosomal protein transmembrane 4 beta IEA UniProt GO_REF:0000044 NCBI chr13:41,134...127,399
Ensembl chr13:41,121...127,182
JBrowse link
G NSG2 neuronal vesicle trafficking associated 2 IEA Ensembl GO_REF:0000107 NCBI chr 4:38,491,995...38,550,672
Ensembl chr 4:38,491,989...38,550,619
JBrowse link
G PMEL premelanosome protein IEA Ensembl GO_REF:0000107 NCBI chr10:292,595...327,618
Ensembl chr10:292,597...300,098
JBrowse link
G RAB27A RAB27A, member RAS oncogene family IEA Ensembl GO_REF:0000107 NCBI chr30:20,633,576...20,706,240
Ensembl chr30:20,635,400...20,690,521
JBrowse link
G RAB27B RAB27B, member RAS oncogene family IEA Ensembl GO_REF:0000107 NCBI chr 1:20,695,100...20,832,745
Ensembl chr 1:20,700,514...20,832,975
JBrowse link
G SORL1 sortilin related receptor 1 IEA UniProt GO_REF:0000044 NCBI chr 5:12,493,750...12,650,530
Ensembl chr 5:12,431,377...12,650,784
JBrowse link
G TMEM9 transmembrane protein 9 ISO (PMID:30374053) UniProt PMID:30374053 NCBI chr 7:2,069,017...2,087,961 JBrowse link
multivesicular body, internal vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD63 CD63 molecule IEA Ensembl GO_REF:0000107 NCBI chr10:126,370...139,301
Ensembl chr10:126,449...129,742
JBrowse link
G LAPTM4B lysosomal protein transmembrane 4 beta IEA Ensembl GO_REF:0000107 NCBI chr13:41,134...127,399
Ensembl chr13:41,121...127,182
JBrowse link
G LRRK2 leucine rich repeat kinase 2 ISO (PMID:19640926) ParkinsonsUK-UCL PMID:19640926 NCBI chr27:13,282,824...13,420,917
Ensembl chr27:13,283,756...13,420,870
JBrowse link
multivesicular body, internal vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EGFR epidermal growth factor receptor IEA Ensembl GO_REF:0000107 NCBI chr18:5,983,669...6,044,092
Ensembl chr18:5,982,770...6,042,631
JBrowse link
Ragulator complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMTOR1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr21:25,981,170...25,986,942
Ensembl chr21:25,981,254...25,996,432
JBrowse link
G LAMTOR2 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 7:41,760,632...41,764,926
Ensembl chr 7:41,760,638...41,763,299
JBrowse link
G LAMTOR3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr32:21,820,853...21,834,443
Ensembl chr32:21,820,985...21,834,351
JBrowse link
G LAMTOR4 late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 6:9,372,728...9,376,047
Ensembl chr 6:9,372,715...9,375,945
JBrowse link
G LAMTOR5 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 IEA InterPro GO_REF:0000002 NCBI chr 6:41,591,332...41,595,913 JBrowse link
G LOC102156380 ragulator complex protein LAMTOR5 pseudogene ISO (PMID:22980980) UniProtKB PMID:22980980 NCBI chr 9:53,420,574...53,421,161 JBrowse link
G SLC38A9 solute carrier family 38 member 9 colocalizes_with IEA
ISO
(PMID:25561175), (PMID:25567906) Ensembl
UniProtKB
PMID:25561175, PMID:25567906 GO_REF:0000107 NCBI chr 2:42,921,906...43,004,265
Ensembl chr 2:42,922,494...42,991,577
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 16531
    cellular anatomical entity 16390
      endomembrane system 3606
        endosome 785
          late endosome 230
            Mon1-Ccz1 complex 4
            late endosome lumen + 0
            late endosome membrane + 74
            multivesicular body + 49
Path 2
Term Annotations click to browse term
  cellular_component 16531
    cellular anatomical entity 16390
      organelle 11581
        membrane-bounded organelle 10154
          vesicle 1841
            intracellular vesicle 1687
              cytoplasmic vesicle 1681
                endosome 785
                  late endosome 230
                    Mon1-Ccz1 complex 4
                    late endosome lumen + 0
                    late endosome membrane + 74
                    multivesicular body + 49
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.