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ONTOLOGY REPORT - ANNOTATIONS

Term:late endosome
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Accession:GO:0005770 term browser browse the term
Definition:A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center.
Synonyms:exact_synonym: prevacuolar compartment
 broad_synonym: PVC
 xref: NIF_Subcellular:nlx_subcell_20090702

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late endosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca3 ATP binding cassette subfamily A member 3 located_in ISO (PMID:27177387) UniProt PMID:27177387 NCBI chrNW_004955442:14,933,550...14,989,492
Ensembl chrNW_004955442:14,933,550...14,989,492 		JBrowse link
G Abca5 ATP binding cassette subfamily A member 5 located_in ISO (MGI:3581349|PMID:15870284) BHF-UCL PMID:15870284 MGI:3581349 NCBI chrNW_004955478:3,526,376...3,586,811
Ensembl chrNW_004955478:3,519,368...3,586,811 		JBrowse link
G Ankrd13a ankyrin repeat domain 13A located_in ISO (PMID:22298428) UniProt PMID:22298428 NCBI chrNW_004955455:8,576,406...8,610,878
Ensembl chrNW_004955455:8,576,406...8,610,995 		JBrowse link
G Ankrd13b ankyrin repeat domain 13B located_in ISO (PMID:22298428) UniProt PMID:22298428 NCBI chrNW_004955481:3,644,332...3,662,375
Ensembl chrNW_004955481:3,644,332...3,661,895 		JBrowse link
G Ankrd27 ankyrin repeat domain 27 located_in ISO (PMID:24856514) UniProt PMID:24856514 NCBI chrNW_004955468:5,314,779...5,364,925
Ensembl chrNW_004955468:5,324,858...5,363,778 		JBrowse link
G Ap5m1 adaptor related protein complex 5 subunit mu 1 located_in ISO (PMID:22022230) UniProt PMID:22022230 NCBI chrNW_004955466:11,191,511...11,216,274
Ensembl chrNW_004955466:11,191,511...11,209,388 		JBrowse link
G Ap5s1 adaptor related protein complex 5 subunit sigma 1 located_in ISO (PMID:22022230) UniProt PMID:22022230 NCBI chrNW_004955415:14,665,450...14,669,456
Ensembl chrNW_004955415:14,664,849...14,672,478 		JBrowse link
G Apoe apolipoprotein E ISO RGD PMID:7806565 RGD:1626382 NCBI chrNW_004955555:1,998,170...2,002,003
Ensembl chrNW_004955555:1,999,711...2,001,888 		JBrowse link
G Arf1 ADP ribosylation factor 1 ISO RGD PMID:21421027 RGD:9684860 NCBI chrNW_004955581:319,942...335,112
Ensembl chrNW_004955581:319,942...335,112 		JBrowse link
G Atg9a autophagy related 9A located_in ISO (PMID:22456507) RGD
MGI		 PMID:16940348 PMID:22456507 RGD:4889884 NCBI chrNW_004955453:14,203,798...14,214,760
Ensembl chrNW_004955453:14,206,065...14,213,729 		JBrowse link
G Atp13a2 ATPase cation transporting 13A2 located_in ISO (PMID:25392495) ParkinsonsUK-UCL PMID:25392495 NCBI chrNW_004955527:1,805,854...1,823,623
Ensembl chrNW_004955527:1,806,009...1,823,344 		JBrowse link
G Atp7a ATPase copper transporting alpha located_in ISO (PMID:8943055) RGD
UniProt		 PMID:8943055 PMID:16741141 RGD:1599391 NCBI chrNW_004955557:1,355,471...1,515,725
Ensembl chrNW_004955557:1,355,397...1,515,393 		JBrowse link
G Atp7b ATPase copper transporting beta located_in ISO (PMID:15681833) RGD
UniProt		 PMID:15681833 PMID:16741141 RGD:1599391 NCBI chrNW_004955431:5,228,395...5,297,120
Ensembl chrNW_004955431:5,229,126...5,269,616 		JBrowse link
G Atp9a ATPase phospholipid transporting 9A (putative) located_in ISO (PMID:36604604)
(MGI:7484285|PMID:36604604)		 UniProt PMID:36604604 MGI:7484285 NCBI chrNW_004955445:6,876,937...6,991,513
Ensembl chrNW_004955445:6,876,952...6,996,028 		JBrowse link
G Bace1 beta-secretase 1 located_in ISO (PMID:16033761), (PMID:23109336), (PMID:24612608), (PMID:27084579), (PMID:27302062) UniProt PMID:16033761 PMID:23109336 PMID:24612608 PMID:27084579 PMID:27302062 NCBI chrNW_004955412:18,596,643...18,620,089
Ensembl chrNW_004955412:18,596,643...18,620,362 		JBrowse link
G Bltp3a bridge-like lipid transfer protein family member 3A located_in ISO (PMID:35499567) UniProt PMID:35499567 NCBI chrNW_004955437:2,844,544...2,905,073
Ensembl chrNW_004955437:2,875,835...2,904,114 		JBrowse link
G Cd2ap CD2 associated protein is_active_in ISO (PMID:15956777) MGI PMID:15956777 NCBI chrNW_004955437:12,005,399...12,087,014
Ensembl chrNW_004955437:11,983,311...12,091,100 		JBrowse link
G Cd63 CD63 molecule located_in ISO (PMID:14668490), (PMID:27435297) MGI PMID:14668490 PMID:27435297 NCBI chrNW_004955458:3,362,511...3,363,916
Ensembl chrNW_004955458:3,362,511...3,363,981 		JBrowse link
G Cd74 CD74 molecule located_in ISO (MGI:3691984|PMID:11483509), (PMID:15294975) MGI PMID:11483509 PMID:15294975 MGI:3691984 NCBI chrNW_004955415:4,129,151...4,138,336
Ensembl chrNW_004955415:4,129,254...4,137,826 		JBrowse link
G Chid1 chitinase domain containing 1 located_in ISO (PMID:16357325) UniProt PMID:16357325 NCBI chrNW_004955476:11,246,745...11,276,341
Ensembl chrNW_004955476:11,246,490...11,276,341 		JBrowse link
G Chmp2b charged multivesicular body protein 2B located_in ISO (PMID:16041373) UniProt PMID:16041373 NCBI chrNW_004955407:6,014,478...6,047,916
Ensembl chrNW_004955407:6,014,478...6,047,916 		JBrowse link
G Clcn3 chloride voltage-gated channel 3 located_in ISO (PMID:12471024) UniProt PMID:12471024 NCBI chrNW_004955403:36,625,871...36,710,201
Ensembl chrNW_004955403:36,625,770...36,710,201 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin located_in ISO (PMID:10332042), (PMID:15471887), (PMID:22261744)
(PMID:15588329)
(PMID:23840424)		 UniProt
MGI		 PMID:10332042 PMID:15471887 PMID:15588329 PMID:22261744 PMID:23840424 NCBI chrNW_004955493:6,696,520...6,707,849
Ensembl chrNW_004955493:6,696,241...6,707,849 		JBrowse link
G Cltcl1 clathrin heavy chain like 1 located_in ISO (PMID:20065094) UniProt PMID:20065094 NCBI chrNW_004955442:18,688,019...18,803,458
Ensembl chrNW_004955442:18,687,746...18,804,104 		JBrowse link
G Cst7 cystatin F located_in ISO (MGI:6294233|PMID:15212960) ARUK-UCL PMID:15212960 MGI:6294233 NCBI chrNW_004955415:31,082,978...31,086,379
Ensembl chrNW_004955415:31,082,978...31,086,379 		JBrowse link
G Ctns cystinosin, lysosomal cystine transporter located_in ISO (PMID:15128704) UniProt PMID:15128704 NCBI chrNW_004955467:13,151,663...13,169,005
Ensembl chrNW_004955467:13,151,957...13,168,696 		JBrowse link
G Ctss cathepsin S located_in ISO (PMID:22365146) ARUK-UCL PMID:22365146 NCBI chrNW_004955413:99,279...124,793
Ensembl chrNW_004955413:99,159...124,042 		JBrowse link
G Cxcr4 C-X-C motif chemokine receptor 4 located_in ISO (PMID:21540189) UniProt PMID:21540189 NCBI chrNW_004955440:3,456,165...3,460,024
Ensembl chrNW_004955440:3,455,153...3,460,109 		JBrowse link
G Ddit3 DNA damage inducible transcript 3 located_in ISO (PMID:23028046) MGI PMID:23028046 NCBI chrNW_004955458:5,232,979...5,238,513
Ensembl chrNW_004955458:5,232,979...5,238,513 		JBrowse link
G Dennd10 DENN domain containing 10 located_in ISO (PMID:30771381) UniProt PMID:30771381 NCBI chrNW_004955431:23,601,338...23,623,852
Ensembl chrNW_004955431:23,600,589...23,624,292 		JBrowse link
G Derl1 derlin 1 located_in ISO (PMID:19509052) MGI PMID:19509052 NCBI chrNW_004955540:1,918,230...1,944,186
Ensembl chrNW_004955540:1,917,655...1,944,214 		JBrowse link
G Derl2 derlin 2 located_in ISO (PMID:19509052) MGI PMID:19509052 NCBI chrNW_004955467:10,824,922...10,837,408
Ensembl chrNW_004955467:10,825,341...10,837,328 		JBrowse link
G Dync1li1 dynein cytoplasmic 1 light intermediate chain 1 located_in ISO RGD PMID:21169557 RGD:13207422 NCBI chrNW_004955620:46,535...82,595
Ensembl chrNW_004955620:46,556...82,595 		JBrowse link
G Dync1li2 dynein cytoplasmic 1 light intermediate chain 2 located_in ISO RGD PMID:21169557 RGD:13207422 NCBI chrNW_004955433:23,262,981...23,286,506
Ensembl chrNW_004955433:23,262,981...23,287,067 		JBrowse link
G Dysf dysferlin located_in ISO (PMID:20595382) UniProt PMID:20595382 NCBI chrNW_004955424:13,756,130...13,970,437
Ensembl chrNW_004955424:13,756,130...13,970,436 		JBrowse link
G Ecpas Ecm29 proteasome adaptor and scaffold located_in ISO (PMID:15496406) UniProt PMID:15496406 NCBI chrNW_004955419:15,775,208...15,886,101
Ensembl chrNW_004955419:15,782,453...15,890,022 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 located_in ISO (PMID:21072319) BHF-UCL PMID:21072319 NCBI chrNW_004955435:12,531,651...12,626,969
Ensembl chrNW_004955435:12,531,642...12,627,874 		JBrowse link
G Exoc8 exocyst complex component 8 located_in ISO (PMID:24344185) UniProt PMID:24344185 NCBI chrNW_004955492:7,476,866...7,481,186
Ensembl chrNW_004955492:7,477,015...7,479,165 		JBrowse link
G F2r coagulation factor II thrombin receptor located_in ISO (PMID:24732013) UniProt PMID:24732013 NCBI chrNW_004955425:24,144,905...24,164,498 JBrowse link
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 located_in ISO (PMID:20100911) UniProt PMID:20100911 NCBI chrNW_004955420:26,019,621...26,076,846
Ensembl chrNW_004955420:26,019,514...26,074,492 		JBrowse link
G Gja1 gap junction protein alpha 1 ISO RGD PMID:16162097 RGD:1582681 NCBI chrNW_004955436:3,612,533...3,618,095
Ensembl chrNW_004955436:3,612,533...3,618,095 		JBrowse link
G Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 located_in ISO (PMID:10777580) MGI PMID:10777580 NCBI chrNW_004955409:10,406,248...10,424,431
Ensembl chrNW_004955409:10,406,723...10,424,431 		JBrowse link
G Grin2b glutamate ionotropic receptor NMDA type subunit 2B located_in ISO (MGI:6370252|PMID:31424425) UniProt PMID:31424425 MGI:6370252 NCBI chrNW_004955413:10,358,931...10,780,004
Ensembl chrNW_004955413:10,376,597...10,779,145 		JBrowse link
G Grn granulin precursor located_in ISO (PMID:26370502) UniProt PMID:26370502 NCBI chrNW_004955451:17,368,600...17,371,981
Ensembl chrNW_004955451:17,368,428...17,372,377 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 located_in ISO (MGI:5700294|PMID:21238931) ParkinsonsUK-UCL PMID:21238931 MGI:5700294 NCBI chrNW_004955412:23,863,513...23,867,984
Ensembl chrNW_004955412:23,862,590...23,867,984 		JBrowse link
G Htt huntingtin located_in ISO (PMID:17704510) UniProt PMID:17704510 NCBI chrNW_004955514:1,906,189...2,042,357
Ensembl chrNW_004955514:1,906,502...2,038,889 		JBrowse link
G Igf2r insulin like growth factor 2 receptor located_in ISO (PMID:22456507) RGD
MGI		 PMID:19337031 PMID:22456507 RGD:4892338 NCBI chrNW_004955439:20,754,915...20,874,759
Ensembl chrNW_004955439:20,752,855...20,851,281 		JBrowse link
G Irgm immunity related GTPase M located_in ISO (MGI:3656111|PMID:16888103), (MGI:4430426|PMID:20072621) UniProt PMID:16888103 PMID:20072621 MGI:3656111 MGI:4430426 NCBI chrNW_004955408:2,338,510...2,344,566 JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 located_in ISO (PMID:21957902) BHF-UCL PMID:21957902 NCBI chrNW_004955422:14,212,563...14,544,556
Ensembl chrNW_004955422:14,212,553...14,544,556 		JBrowse link
G Kidins220 kinase D interacting substrate 220 located_in ISO PMID:17724123 UniProt PMID:17724123 RGD:8554481 NCBI chrNW_004955487:782,683...862,079
Ensembl chrNW_004955487:782,683...862,079 		JBrowse link
G Lamp1 lysosomal associated membrane protein 1 located_in ISO (PMID:15052268), (PMID:15292400), (PMID:15792797), (PMID:16542649), (PMID:18388320), (PMID:18767904)
(PMID:12446704), (PMID:14668490), (PMID:15294975), (PMID:16415873), (PMID:17620357), (PMID:18477453), (PMID:24841562)		 MGI PMID:12446704 PMID:14668490 PMID:15052268 PMID:15292400 PMID:15294975 More... NCBI chrNW_004955404:557,090...573,532
Ensembl chrNW_004955404:557,862...573,379 		JBrowse link
G Lamp2 lysosomal associated membrane protein 2 located_in ISO (PMID:15229288)
(PMID:14668490)		 MGI PMID:14668490 PMID:15229288 NCBI chrNW_004955572:1,423,048...1,464,443
Ensembl chrNW_004955572:1,422,981...1,462,622 		JBrowse link
G Lamp5 lysosomal associated membrane protein family member 5 located_in ISO (PMID:25592972) MGI PMID:25592972 NCBI chrNW_004955415:19,488,533...19,502,599
Ensembl chrNW_004955415:19,488,527...19,502,640 		JBrowse link
G Lamtor2 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 located_in ISO (MGI:4887551|PMID:19177150), (PMID:15263099), (PMID:24841562) UniProt PMID:15263099 PMID:19177150 PMID:24841562 MGI:4887551 NCBI chrNW_004955545:2,237,506...2,242,070
Ensembl chrNW_004955545:2,236,868...2,242,137 		JBrowse link
G Lamtor3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 is_active_in
located_in		 ISO (PMID:24841562)
(MGI:4887551|PMID:19177150), (PMID:15263099), (PMID:24841562)		 MGI PMID:15263099 PMID:19177150 PMID:24841562 MGI:4887551 NCBI chrNW_004955496:7,789,210...7,809,143
Ensembl chrNW_004955496:7,788,997...7,809,143 		JBrowse link
G Ldlr low density lipoprotein receptor located_in ISO (PMID:17461796)
(PMID:11092755)		 UniProt
MGI		 PMID:11092755 PMID:17461796 NCBI chrNW_004955495:2,114,702...2,135,584
Ensembl chrNW_004955495:2,114,434...2,138,056 		JBrowse link
G Lgmn legumain located_in ISO (PMID:12775715) MGI PMID:12775715 NCBI chrNW_004955438:14,905,856...14,938,722
Ensembl chrNW_004955438:14,905,856...14,939,256 		JBrowse link
G Lipc lipase C, hepatic type ISO RGD PMID:14701798 RGD:1625029 NCBI chrNW_004955450:15,947,869...16,062,449
Ensembl chrNW_004955450:15,948,187...16,048,766 		JBrowse link
G LOC102006100 TIR domain-containing adapter molecule 2 located_in ISO (PMID:19412184) UniProt PMID:19412184 NCBI chrNW_004955408:35,342,733...35,382,821
Ensembl chrNW_004955408:35,374,508...35,382,314 		JBrowse link
G LOC102023843 HLA class II histocompatibility antigen, DM alpha chain located_in ISO (PMID:7584146), (PMID:7985028) MGI PMID:7584146 PMID:7985028 NCBI chrNW_004955437:1,558,806...1,562,294
Ensembl chrNW_004955437:1,558,911...1,562,162 		JBrowse link
G LOC102027549 serotransferrin located_in ISO (PMID:15880641) UniProt PMID:15880641 NCBI chrNW_004955501:4,801,710...4,832,025
Ensembl chrNW_004955501:4,801,885...4,831,910 		JBrowse link
G M6pr mannose-6-phosphate receptor, cation dependent located_in ISO (PMID:12388596) MGI PMID:12388596 NCBI chrNW_004955413:6,144,486...6,156,860
Ensembl chrNW_004955413:6,144,105...6,156,854 		JBrowse link
G Magi2 membrane associated guanylate kinase, WW and PDZ domain containing 2 located_in ISO PMID:17724123 UniProt PMID:17724123 RGD:8554481 NCBI chrNW_004955410:6,739,115...7,295,027
Ensembl chrNW_004955410:6,400,242...7,294,924 		JBrowse link
G Map1lc3a microtubule associated protein 1 light chain 3 alpha ISO RGD PMID:19337031 RGD:4892338 NCBI chrNW_004955422:26,774,466...26,776,024
Ensembl chrNW_004955422:26,774,922...26,775,884 		JBrowse link
G Mcoln1 mucolipin TRP cation channel 1 located_in ISO (PMID:21224396) UniProt PMID:21224396 NCBI chrNW_004955563:1,703,408...1,712,908
Ensembl chrNW_004955563:1,703,416...1,745,996 		JBrowse link
G Mfsd12 major facilitator superfamily domain containing 12 part_of ISO (PMID:29025994) CACAO PMID:29025994 NCBI chrNW_004955495:5,505,528...5,516,330
Ensembl chrNW_004955495:5,506,154...5,516,142 		JBrowse link
G Micall1 MICAL like 1 located_in ISO (PMID:21795389) UniProt PMID:21795389 NCBI chrNW_004955413:24,264,726...24,290,578
Ensembl chrNW_004955413:24,264,726...24,289,434 		JBrowse link
G Mtm1 myotubularin 1 located_in ISO (PMID:14722070) UniProt PMID:14722070 NCBI chrNW_004955498:6,329,402...6,444,708
Ensembl chrNW_004955498:6,329,275...6,445,169 		JBrowse link
G Mvb12b multivesicular body subunit 12B located_in ISO (PMID:22232651) UniProt PMID:22232651 NCBI chrNW_004955419:1,949,211...2,116,525
Ensembl chrNW_004955419:1,949,156...2,104,098 		JBrowse link
G Myo5a myosin VA located_in ISO (PMID:24006491) UniProt PMID:24006491 NCBI chrNW_004955409:2,409,503...2,530,539
Ensembl chrNW_004955409:2,428,815...2,530,012 		JBrowse link
G Nbr1 NBR1 autophagy cargo receptor located_in ISO (MGI:3837054|PMID:19250911) UniProt PMID:19250911 MGI:3837054 NCBI chrNW_004955451:16,871,091...16,896,090
Ensembl chrNW_004955451:16,871,586...16,895,179 		JBrowse link
G Nmnat2 nicotinamide nucleotide adenylyltransferase 2 located_in ISO (PMID:20943658) MGI PMID:20943658 NCBI chrNW_004955406:22,077,247...22,274,668
Ensembl chrNW_004955406:22,076,343...22,227,200 		JBrowse link
G Nsg1 neuronal vesicle trafficking associated 1 located_in ISO PMID:28874679
(MGI:6094363|PMID:28874679)		 UniProt PMID:28874679 MGI:6094363 RGD:13432228 NCBI chrNW_004955514:5,273,810...5,294,925
Ensembl chrNW_004955514:5,273,810...5,295,710 		JBrowse link
G Nsg2 neuronal vesicle trafficking associated 2 located_in ISO PMID:28874679 UniProt PMID:28874679 RGD:13432228 NCBI chrNW_004955408:26,664,884...26,724,949
Ensembl chrNW_004955408:26,664,537...26,724,949 		JBrowse link
G Ntrk1 neurotrophic receptor tyrosine kinase 1 located_in ISO PMID:17724123
(PMID:24760869)		 UniProt
MGI		 PMID:17724123 PMID:24760869 RGD:8554481 NCBI chrNW_004955545:2,929,704...2,947,579
Ensembl chrNW_004955545:2,929,704...2,947,579 		JBrowse link
G Osbpl1a oxysterol binding protein like 1A located_in ISO (PMID:16176980) UniProt PMID:16176980 NCBI chrNW_004955402:12,530,130...12,718,703
Ensembl chrNW_004955402:12,530,135...12,718,703 		JBrowse link
G Parm1 prostate androgen-regulated mucin-like protein 1 located_in ISO (PMID:18027867) UniProt PMID:18027867 NCBI chrNW_004955474:1,065,758...1,144,460
Ensembl chrNW_004955474:1,067,230...1,141,056 		JBrowse link
G Pcsk9 proprotein convertase subtilisin/kexin type 9 located_in ISO (PMID:17461796), (PMID:18039658) UniProt PMID:17461796 PMID:18039658 NCBI chrNW_004955464:4,424,583...4,439,805
Ensembl chrNW_004955464:4,425,435...4,439,842 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 located_in ISO (PMID:14617358) UniProt PMID:14617358 NCBI chrNW_004955402:28,081,150...28,195,305
Ensembl chrNW_004955402:28,081,098...28,196,252 		JBrowse link
G Pik3r4 phosphoinositide-3-kinase regulatory subunit 4 located_in ISO (PMID:14617358) UniProt PMID:14617358 NCBI chrNW_004955501:7,604,934...7,681,947
Ensembl chrNW_004955501:7,604,501...7,681,947 		JBrowse link
G Psap prosaposin located_in ISO (PMID:26370502) UniProt PMID:26370502 NCBI chrNW_004955437:19,667,252...19,683,669 JBrowse link
G Rab14 RAB14, member RAS oncogene family located_in ISO PMID:15004230 UniProt PMID:15004230 RGD:8554557 NCBI chrNW_004955419:6,790,110...6,812,870
Ensembl chrNW_004955419:6,790,707...6,812,870 		JBrowse link
G Rab27a RAB27A, member RAS oncogene family located_in ISO (PMID:17237785), (PMID:30771381) UniProt PMID:17237785 PMID:30771381 NCBI chrNW_004955409:588,725...621,874
Ensembl chrNW_004955409:588,254...621,874 		JBrowse link
G Rab27b RAB27B, member RAS oncogene family located_in ISO (PMID:30771381) UniProt PMID:30771381 NCBI chrNW_004955402:39,357,500...39,415,530
Ensembl chrNW_004955402:39,357,500...39,415,530 		JBrowse link
G Rab31 RAB31, member RAS oncogene family located_in ISO RGD PMID:11746448 RGD:2316821 NCBI chrNW_004955402:2,354,399...2,446,537
Ensembl chrNW_004955402:2,354,646...2,446,453 		JBrowse link
G Rab34 RAB34, member RAS oncogene family located_in ISO (MGI:5467668|PMID:23197834) ParkinsonsUK-UCL PMID:23197834 MGI:5467668 NCBI chrNW_004955481:4,441,290...4,445,969
Ensembl chrNW_004955481:4,441,407...4,445,969 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family located_in ISO (PMID:11172003), (PMID:15588329), (PMID:19509052), (PMID:20943658), (PMID:23028046), (PMID:24035762), (PMID:24334765), (PMID:24760869), (PMID:25592972), (PMID:27390154), (PMID:35353806)
(PMID:14617358), (PMID:15078902), (PMID:17010938), (PMID:18272684)		 RGD
MGI		 PMID:11172003 PMID:14617358 PMID:15078902 PMID:15588329 PMID:17010938 More... RGD:4892338 NCBI chrNW_004955429:15,103,792...15,167,498 JBrowse link
G Rab7b RAB7B, member RAS oncogene family located_in ISO (PMID:20375062)
(MGI:3834524|PMID:17395780), (MGI:4355098|PMID:19587007)		 UniProt PMID:17395780 PMID:19587007 PMID:20375062 MGI:3834524 MGI:4355098 NCBI chrNW_004955406:41,615,302...41,638,157
Ensembl chrNW_004955406:41,615,302...41,638,151 		JBrowse link
G Rab9a RAB9A, member RAS oncogene family located_in ISO (PMID:15078902) MGI PMID:15078902 NCBI chrNW_004955519:4,489,159...4,496,089
Ensembl chrNW_004955519:4,489,159...4,496,089 		JBrowse link
G Rap1a RAP1A, member of RAS oncogene family located_in ISO PMID:17724123 UniProt PMID:17724123 RGD:8554481 NCBI chrNW_004955435:15,090,521...15,171,397
Ensembl chrNW_004955435:15,150,827...15,171,397 		JBrowse link
G Rapgef2 Rap guanine nucleotide exchange factor 2 located_in ISO (PMID:17724123) UniProt PMID:17724123 NCBI chrNW_004955471:12,670,837...12,838,910
Ensembl chrNW_004955471:12,670,764...12,815,430 		JBrowse link
G Rhob ras homolog family member B located_in ISO (PMID:17623777) MGI PMID:17623777 NCBI chrNW_004955469:2,964,968...2,966,998
Ensembl chrNW_004955469:2,965,041...2,965,631 		JBrowse link
G Rilp Rab interacting lysosomal protein located_in ISO (PMID:17010938), (PMID:18272684) UniProt PMID:17010938 PMID:18272684 NCBI chrNW_004955481:1,531,175...1,534,794
Ensembl chrNW_004955481:1,531,574...1,534,443 		JBrowse link
G Rnf128 ring finger protein 128 located_in ISO (PMID:12705856) MGI PMID:12705856 NCBI chrNW_004955490:9,288,482...9,309,571
Ensembl chrNW_004955490:9,287,876...9,309,641 		JBrowse link
G Rubcn rubicon autophagy regulator located_in ISO (PMID:19270696) UniProt PMID:19270696 NCBI chrNW_004955420:12,124,193...12,187,154
Ensembl chrNW_004955420:12,123,450...12,187,154 		JBrowse link
G Rufy1 RUN and FYVE domain containing 1 NOT|located_in ISO (PMID:11172003) MGI PMID:11172003 NCBI chrNW_004955408:946,842...991,717
Ensembl chrNW_004955408:947,317...982,333 		JBrowse link
G Sdf4 stromal cell derived factor 4 located_in ISO PMID:17442889
(MGI:80005|PMID:8609160)		 BHF-UCL PMID:8609160 PMID:17442889 MGI:80005 RGD:2312426 NCBI chrNW_004955486:9,555,773...9,565,310
Ensembl chrNW_004955486:9,555,364...9,567,340 		JBrowse link
G Siglec1 sialic acid binding Ig like lectin 1 located_in ISO (PMID:21359217) AgBase PMID:21359217 NCBI chrNW_004955415:14,539,284...14,560,614
Ensembl chrNW_004955415:14,536,266...14,560,632 		JBrowse link
G Sla2 Src like adaptor 2 located_in ISO (PMID:12024036) MGI PMID:12024036 NCBI chrNW_004955422:24,978,447...25,003,732
Ensembl chrNW_004955422:24,986,028...25,003,732 		JBrowse link
G Slc11a1 solute carrier family 11 member 1 located_in ISO (PMID:17620357)
(PMID:9034150)		 MGI PMID:9034150 PMID:17620357 NCBI chrNW_004955453:14,980,562...14,995,118
Ensembl chrNW_004955453:14,980,562...14,995,608 		JBrowse link
G Slc30a2 solute carrier family 30 member 2 located_in ISO (PMID:17349999) BHF-UCL PMID:17349999 NCBI chrNW_004955452:5,507,614...5,515,669
Ensembl chrNW_004955452:5,504,022...5,516,246 		JBrowse link
G Slc30a3 solute carrier family 30 member 3 located_in ISO (PMID:17349999) BHF-UCL PMID:17349999 NCBI chrNW_004955469:9,235,159...9,254,291
Ensembl chrNW_004955469:9,235,104...9,254,964 		JBrowse link
G Slc30a4 solute carrier family 30 member 4 located_in ISO (PMID:17349999) BHF-UCL PMID:17349999 NCBI chrNW_004955409:7,963,454...7,991,600
Ensembl chrNW_004955409:7,963,454...7,995,027 		JBrowse link
G Slc31a1 solute carrier family 31 member 1 located_in ISO (PMID:24167251) MGI PMID:24167251 NCBI chrNW_004955419:14,221,258...14,264,288
Ensembl chrNW_004955419:14,220,495...14,264,699 		JBrowse link
G Slc31a2 solute carrier family 31 member 2 located_in ISO (PMID:24167251) MGI PMID:24167251 NCBI chrNW_004955419:14,332,749...14,343,363
Ensembl chrNW_004955419:14,332,749...14,343,700 		JBrowse link
G Slc38a9 solute carrier family 38 member 9 located_in ISO (PMID:25561175) UniProt PMID:25561175 NCBI chrNW_004955446:12,042,848...12,132,211
Ensembl chrNW_004955446:12,042,313...12,132,211 		JBrowse link
G Slc9a6 solute carrier family 9 member A6 located_in ISO (PMID:24035762) MGI PMID:24035762 NCBI chrNW_004955489:9,020,719...9,078,375
Ensembl chrNW_004955489:9,019,425...9,078,705 		JBrowse link
G Smo smoothened, frizzled class receptor located_in ISO (PMID:35353806) MGI PMID:35353806 NCBI chrNW_004955479:9,963,377...9,991,670
Ensembl chrNW_004955479:9,964,170...9,993,165 		JBrowse link
G Snx14 sorting nexin 14 located_in ISO (PMID:25848753) UniProt PMID:25848753 NCBI chrNW_004955411:12,967,980...13,048,839
Ensembl chrNW_004955411:12,969,114...13,048,836 		JBrowse link
G Snx16 sorting nexin 16 located_in ISO (PMID:12813048) UniProt PMID:12813048 NCBI chrNW_004955417:159,369...209,166
Ensembl chrNW_004955417:159,312...209,183 		JBrowse link
G Sppl2a signal peptide peptidase like 2A located_in ISO (PMID:16829952) UniProt PMID:16829952 NCBI chrNW_004955409:3,642,113...3,670,779
Ensembl chrNW_004955409:3,645,555...3,670,551 		JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase located_in ISO (PMID:20605918) UniProt PMID:20605918 NCBI chrNW_004955445:19,213,210...19,227,670
Ensembl chrNW_004955445:19,215,161...19,228,695 		JBrowse link
G Stx7 syntaxin 7 located_in ISO (PMID:18980942), (PMID:21438968) UniProt PMID:18980942 PMID:21438968 NCBI chrNW_004955436:12,928,274...12,975,745 JBrowse link
G Stx8 syntaxin 8 located_in
is_active_in		 ISO (PMID:10564279)
(PMID:16760431)		 UniProt
MGI		 PMID:10564279 PMID:16760431 NCBI chrNW_004955467:7,524,223...7,789,630
Ensembl chrNW_004955467:7,523,464...7,792,056 		JBrowse link
G Tcirg1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 located_in ISO (PMID:12672822), (PMID:19549681) MGI PMID:12672822 PMID:19549681 NCBI chrNW_004955422:17,768,469...17,778,976
Ensembl chrNW_004955422:17,768,469...17,779,003 		JBrowse link
G Ticam2 toll like receptor adaptor molecule 2 located_in ISO (PMID:19412184) UniProt PMID:19412184 NCBI chrNW_004955411:31,010,373...31,042,321 JBrowse link
G Tmem192 transmembrane protein 192 located_in ISO (PMID:20370317) UniProt PMID:20370317 NCBI chrNW_004955403:40,202,180...40,211,747
Ensembl chrNW_004955403:40,199,850...40,212,765 		JBrowse link
G Tmem230 transmembrane protein 230 located_in ISO (PMID:27270108) UniProt PMID:27270108 NCBI chrNW_004955415:15,733,134...15,743,078
Ensembl chrNW_004955415:15,733,134...15,742,909 		JBrowse link
G Tmem25 transmembrane protein 25 located_in ISO (MGI:6370252|PMID:31424425) UniProt PMID:31424425 MGI:6370252 NCBI chrNW_004955412:19,690,048...19,695,258
Ensembl chrNW_004955412:19,690,048...19,695,258 		JBrowse link
G Tmem59 transmembrane protein 59 located_in ISO (PMID:23376921) UniProt PMID:23376921 NCBI chrNW_004955464:5,193,173...5,222,089
Ensembl chrNW_004955464:5,193,272...5,222,974 		JBrowse link
G Tmem9 transmembrane protein 9 located_in ISO (PMID:12359240) UniProt PMID:12359240 NCBI chrNW_004955406:37,279,885...37,299,196
Ensembl chrNW_004955406:37,279,694...37,314,251 		JBrowse link
G Trappc9 trafficking protein particle complex subunit 9 NOT|located_in ISO (PMID:20004763) MGI PMID:20004763 NCBI chrNW_004955461:13,498,088...14,130,159
Ensembl chrNW_004955461:13,498,671...14,124,227 		JBrowse link
G Tsg101 tumor susceptibility 101 located_in ISO (PMID:15126635) BHF-UCL PMID:15126635 NCBI chrNW_004955414:33,154,812...33,193,769
Ensembl chrNW_004955414:33,154,812...33,193,769 		JBrowse link
G Ttpa alpha tocopherol transfer protein ISO RGD PMID:14531858 RGD:1600431 NCBI chrNW_004955444:15,877,972...15,891,949
Ensembl chrNW_004955444:15,869,940...15,894,544 		JBrowse link
G Uvrag UV radiation resistance associated located_in ISO (PMID:19270696) UniProt PMID:19270696 NCBI chrNW_004955414:15,733,116...16,043,555
Ensembl chrNW_004955414:15,731,519...16,043,555 		JBrowse link
G Vamp5 vesicle associated membrane protein 5 located_in ISO (MGI:1858282|PMID:9725904) BHF-UCL PMID:9725904 MGI:1858282 NCBI chrNW_004955424:1,911,711...1,912,865
Ensembl chrNW_004955424:1,911,711...1,912,874 		JBrowse link
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog located_in ISO (PMID:19109425) UniProt PMID:19109425 NCBI chrNW_004955438:1,320,862...1,351,344
Ensembl chrNW_004955438:1,321,845...1,347,535 		JBrowse link
G Vopp1 VOPP1 WW domain binding protein located_in ISO (PMID:30285739) UniProt PMID:30285739 NCBI chrNW_004955456:88,525...181,480
Ensembl chrNW_004955456:141,848...179,859 		JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes located_in ISO (PMID:11382755), (PMID:21148287) UniProt PMID:11382755 PMID:21148287 NCBI chrNW_004955412:20,161,520...20,190,141
Ensembl chrNW_004955412:20,177,623...20,190,141 		JBrowse link
G Vps13c vacuolar protein sorting 13 homolog C located_in ISO (PMID:30093493) UniProt PMID:30093493 NCBI chrNW_004955450:13,016,933...13,178,797
Ensembl chrNW_004955450:13,016,950...13,174,990 		JBrowse link
G Vps16 VPS16 core subunit of CORVET and HOPS complexes located_in ISO (PMID:11382755), (PMID:19109425) UniProt PMID:11382755 PMID:19109425 NCBI chrNW_004955415:13,791,611...13,813,500
Ensembl chrNW_004955415:13,791,611...13,813,500 		JBrowse link
G Vps18 VPS18 core subunit of CORVET and HOPS complexes located_in ISO (PMID:11382755) UniProt PMID:11382755 NCBI chrNW_004955416:7,772,653...7,780,408
Ensembl chrNW_004955416:7,772,653...7,782,542 		JBrowse link
G Vps26b VPS26, retromer complex component B located_in ISO (MGI:5607223|PMID:21920005) UniProt PMID:21920005 MGI:5607223 NCBI chrNW_004955412:35,035,730...35,061,441
Ensembl chrNW_004955412:35,035,208...35,061,441 		JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes located_in ISO (PMID:19109425) UniProt PMID:19109425 NCBI chrNW_004955482:6,333,282...6,352,369
Ensembl chrNW_004955482:6,332,366...6,353,834 		JBrowse link
G Vps33b VPS33B late endosome and lysosome associated located_in ISO (PMID:15052268) UniProt PMID:15052268 NCBI chrNW_004955416:15,049,849...15,071,108
Ensembl chrNW_004955416:15,048,106...15,071,102 		JBrowse link
G Vps36 vacuolar protein sorting 36 homolog located_in ISO (PMID:15755741) MGI PMID:15755741 NCBI chrNW_004955431:5,443,050...5,466,577
Ensembl chrNW_004955431:5,443,050...5,463,366 		JBrowse link
G Vps39 VPS39 subunit of HOPS complex located_in ISO (PMID:33422265) UniProt PMID:33422265 NCBI chrNW_004955416:8,893,249...8,936,351
Ensembl chrNW_004955416:8,893,249...8,936,351 		JBrowse link
G Vps41 VPS41 subunit of HOPS complex located_in ISO (PMID:33422265)
(PMID:14668490)		 UniProt
MGI		 PMID:14668490 PMID:33422265 NCBI chrNW_004955460:4,555,870...4,749,154
Ensembl chrNW_004955460:4,555,870...4,749,153 		JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A located_in ISO (PMID:10637304), (PMID:15075231) UniProt PMID:10637304 PMID:15075231 NCBI chrNW_004955484:7,368,938...7,375,964
Ensembl chrNW_004955484:7,368,938...7,375,969 		JBrowse link
G Zfyve26 zinc finger FYVE-type containing 26 located_in ISO (PMID:25365221) MGI PMID:25365221 NCBI chrNW_004955466:2,389,893...2,453,487
Ensembl chrNW_004955466:2,390,527...2,451,664 		JBrowse link
cytoplasmic side of late endosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdip1 cell death inducing p53 target 1 located_in ISO (PMID:27582497) UniProt PMID:27582497 NCBI chrNW_004955442:12,895,403...12,913,517
Ensembl chrNW_004955442:12,895,702...12,913,517 		JBrowse link
G Litaf lipopolysaccharide induced TNF factor located_in ISO (PMID:27582497) UniProt PMID:27582497 NCBI chrNW_004955442:7,054,418...7,084,973
Ensembl chrNW_004955442:7,077,823...7,083,437 		JBrowse link
late endosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb6 ATP binding cassette subfamily B member 6 (LAN blood group) located_in ISO PMID:18160489 UniProt PMID:18160489 RGD:42722002 NCBI chrNW_004955453:14,215,104...14,222,338
Ensembl chrNW_004955453:14,215,408...14,222,172 		JBrowse link
G Abhd6 abhydrolase domain containing 6, acylglycerol lipase located_in ISO (MGI:5700445|PMID:26491015) UniProt PMID:26491015 MGI:5700445 NCBI chrNW_004955430:1,809,969...1,861,441
Ensembl chrNW_004955430:1,808,924...1,861,441 		JBrowse link
G Anxa2 annexin A2 located_in ISO (PMID:23360953) UniProt PMID:23360953 NCBI chrNW_004955450:14,545,586...14,574,161
Ensembl chrNW_004955450:14,512,381...14,574,696 		JBrowse link
G Anxa6 annexin A6 located_in ISO (PMID:23360953) UniProt PMID:23360953 NCBI chrNW_004955408:2,522,027...2,565,862
Ensembl chrNW_004955408:2,522,027...2,570,426 		JBrowse link
G Atp10b ATPase phospholipid transporting 10B (putative) located_in ISO (PMID:26567335) ComplexPortal PMID:26567335 NCBI chrNW_004955408:14,495,165...14,815,648
Ensembl chrNW_004955408:14,492,752...14,595,122 		JBrowse link
G Atp13a2 ATPase cation transporting 13A2 located_in ISO (PMID:29505581) UniProt PMID:29505581 NCBI chrNW_004955527:1,805,854...1,823,623
Ensembl chrNW_004955527:1,806,009...1,823,344 		JBrowse link
G Atp13a3 ATPase 13A3 located_in ISO (PMID:29505581) UniProt PMID:29505581 NCBI chrNW_004955420:14,295,844...14,375,325
Ensembl chrNW_004955420:14,295,768...14,375,325 		JBrowse link
G Atp13a4 ATPase 13A4 located_in ISO (MGI:6141107|PMID:29505581) UniProt PMID:29505581 MGI:6141107 NCBI chrNW_004955420:15,032,370...15,179,190
Ensembl chrNW_004955420:15,032,511...15,174,627 		JBrowse link
G Baiap3 BAI1 associated protein 3 located_in ISO (PMID:28626000) UniProt PMID:28626000 NCBI chrNW_004955442:15,884,034...15,897,894
Ensembl chrNW_004955442:15,884,034...15,898,396 		JBrowse link
G Cd63 CD63 molecule located_in ISO (PMID:23632027) UniProt PMID:23632027 NCBI chrNW_004955458:3,362,511...3,363,916
Ensembl chrNW_004955458:3,362,511...3,363,981 		JBrowse link
G Clcn3 chloride voltage-gated channel 3 located_in ISO (MGI:6414705|PMID:16222710) UniProt PMID:16222710 MGI:6414705 NCBI chrNW_004955403:36,625,871...36,710,201
Ensembl chrNW_004955403:36,625,770...36,710,201 		JBrowse link
G Entrep1 endosomal transmembrane epsin interactor 1 located_in ISO (PMID:34927784) UniProt PMID:34927784 NCBI chrNW_004955434:3,615,284...3,704,014
Ensembl chrNW_004955434:3,615,182...3,704,014 		JBrowse link
G Lamp2 lysosomal associated membrane protein 2 located_in ISO (PMID:21896273) MGI PMID:21896273 NCBI chrNW_004955572:1,423,048...1,464,443
Ensembl chrNW_004955572:1,422,981...1,462,622 		JBrowse link
G Lamtor1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 located_in ISO PMID:19177150 UniProt PMID:19177150 RGD:8553879 NCBI chrNW_004955414:19,228,615...19,235,523
Ensembl chrNW_004955414:19,228,615...19,247,765 		JBrowse link
G Laptm4a lysosomal protein transmembrane 4 alpha located_in ISO (PMID:22096579) UniProt PMID:22096579 NCBI chrNW_004955469:2,604,464...2,626,835
Ensembl chrNW_004955469:2,604,464...2,627,043 		JBrowse link
G Laptm4b lysosomal protein transmembrane 4 beta located_in ISO (PMID:21224396), (PMID:22096579), (PMID:25588945) UniProt PMID:21224396 PMID:22096579 PMID:25588945 NCBI chrNW_004955417:13,574,493...13,625,669
Ensembl chrNW_004955417:13,574,721...13,625,313 		JBrowse link
G LOC102013688 major histocompatibility complex class I-related gene protein located_in ISO (PMID:27043408) UniProt PMID:27043408 NCBI chrNW_004955406:20,098,544...20,117,065
Ensembl chrNW_004955406:20,098,538...20,125,057 		JBrowse link
G LOC102016503 cytochrome b ascorbate-dependent protein 3 located_in ISO (MGI:3695337|PMID:16996694) UniProt PMID:16996694 MGI:3695337 NCBI chrNW_004955511:6,191,644...6,200,099
Ensembl chrNW_004955511:6,191,645...6,200,099 		JBrowse link
G LOC102019320 mamu class II histocompatibility antigen, DR alpha chain located_in ISO (PMID:18305173), (PMID:19117940), (PMID:9075930) UniProt PMID:9075930 PMID:18305173 PMID:19117940 NCBI chrNW_004955437:1,109,735...1,114,742
Ensembl chrNW_004955437:1,109,713...1,114,802 		JBrowse link
G LOC102023521 HLA class II histocompatibility antigen, DM beta chain located_in ISO (PMID:9075930) UniProt PMID:9075930 NCBI chrNW_004955437:1,544,906...1,551,412
Ensembl chrNW_004955437:1,541,491...1,551,159 		JBrowse link
G LOC102023843 HLA class II histocompatibility antigen, DM alpha chain located_in ISO (PMID:9075930) UniProt PMID:9075930 NCBI chrNW_004955437:1,558,806...1,562,294
Ensembl chrNW_004955437:1,558,911...1,562,162 		JBrowse link
G Marchf1 membrane associated ring-CH-type finger 1 located_in ISO (PMID:19117940)
(MGI:4430128|PMID:19880452)		 UniProt PMID:19117940 PMID:19880452 MGI:4430128 NCBI chrNW_004955403:41,187,039...41,484,734
Ensembl chrNW_004955403:41,060,246...41,484,734 		JBrowse link
G Mreg melanoregulin located_in ISO (MGI:6244097|PMID:30174147) UniProt PMID:30174147 MGI:6244097 NCBI chrNW_004955457:9,534...78,617
Ensembl chrNW_004955457:9,493...78,617 		JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 located_in ISO (PMID:27378690) UniProt PMID:27378690 NCBI chrNW_004955402:11,699,434...11,742,899
Ensembl chrNW_004955402:11,699,434...11,742,899 		JBrowse link
G Pip4p1 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1 located_in ISO (PMID:16365287)
(MGI:6144310|PMID:29378918)		 FlyBase
UniProt		 PMID:16365287 PMID:29378918 MGI:6144310 NCBI chrNW_004955550:1,275,921...1,279,262
Ensembl chrNW_004955550:1,275,921...1,279,270 		JBrowse link
G Pip4p2 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 located_in ISO (PMID:16365287)
(MGI:6144310|PMID:29378918)		 FlyBase
UniProt		 PMID:16365287 PMID:29378918 MGI:6144310 NCBI chrNW_004955417:7,769,365...7,825,892
Ensembl chrNW_004955417:7,771,218...7,825,799 		JBrowse link
G Pld3 phospholipase D family member 3 located_in ISO (PMID:29386126)
(MGI:6115966|PMID:28128235)		 UniProt PMID:28128235 PMID:29386126 MGI:6115966 NCBI chrNW_004955578:884,700...905,426
Ensembl chrNW_004955578:884,700...894,433 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family located_in ISO (MGI:5689086|PMID:23708524) GO_Central PMID:23708524 MGI:5689086 NCBI chrNW_004955429:15,103,792...15,167,498 JBrowse link
G Rmc1 regulator of MON1-CCZ1 located_in ISO (PMID:29038162) UniProt PMID:29038162 NCBI chrNW_004955402:11,676,883...11,699,715
Ensembl chrNW_004955402:11,676,671...11,699,709 		JBrowse link
G Rnf13 ring finger protein 13 located_in ISO (MGI:3844769|PMID:19292867) UniProt PMID:19292867 MGI:3844769 NCBI chrNW_004955448:1,053,676...1,195,612 JBrowse link
G Slc11a1 solute carrier family 11 member 1 located_in ISO (MGI:7484270|PMID:9730978) UniProt PMID:9730978 MGI:7484270 NCBI chrNW_004955453:14,980,562...14,995,118
Ensembl chrNW_004955453:14,980,562...14,995,608 		JBrowse link
G Slc29a3 solute carrier family 29 member 3 located_in ISO (PMID:15701636) UniProt PMID:15701636 NCBI chrNW_004955437:20,072,915...20,108,342
Ensembl chrNW_004955437:20,071,742...20,108,558 		JBrowse link
G Slc31a2 solute carrier family 31 member 2 located_in ISO (PMID:17617060) UniProt PMID:17617060 NCBI chrNW_004955419:14,332,749...14,343,363
Ensembl chrNW_004955419:14,332,749...14,343,700 		JBrowse link
G Slc39a14 solute carrier family 39 member 14 located_in ISO (PMID:27703010) UniProt PMID:27703010 NCBI chrNW_004955403:45,828,247...45,867,309
Ensembl chrNW_004955403:45,827,942...45,867,309 		JBrowse link
G Snf8 SNF8 subunit of ESCRT-II located_in ISO (PMID:17010938) UniProt PMID:17010938 NCBI chrNW_004955451:12,396,625...12,406,014
Ensembl chrNW_004955451:12,396,625...12,406,014 		JBrowse link
G Sppl2a signal peptide peptidase like 2A located_in ISO (PMID:21896273) MGI PMID:21896273 NCBI chrNW_004955409:3,642,113...3,670,779
Ensembl chrNW_004955409:3,645,555...3,670,551 		JBrowse link
G Stard3 StAR related lipid transfer domain containing 3 located_in ISO (PMID:24105263), (PMID:28377464) UniProt PMID:24105263 PMID:28377464 NCBI chrNW_004955451:14,395,088...14,412,041
Ensembl chrNW_004955451:14,394,466...14,413,810 		JBrowse link
G Stard3nl STARD3 N-terminal like located_in ISO (PMID:24105263) UniProt PMID:24105263 NCBI chrNW_004955460:5,364,546...5,423,330
Ensembl chrNW_004955460:5,364,552...5,423,381 		JBrowse link
G Stx7 syntaxin 7 ISO RGD PMID:15133481 RGD:4892614 NCBI chrNW_004955436:12,928,274...12,975,745 JBrowse link
G Stx8 syntaxin 8 ISO RGD PMID:15133481 RGD:4892614 NCBI chrNW_004955467:7,524,223...7,789,630
Ensembl chrNW_004955467:7,523,464...7,792,056 		JBrowse link
G Ubxn6 UBX domain protein 6 located_in ISO (PMID:21822278) UniProt PMID:21822278 NCBI chrNW_004955495:4,456,182...4,465,954
Ensembl chrNW_004955495:4,456,308...4,466,254 		JBrowse link
G Vamp7 vesicle associated membrane protein 7 located_in ISO PMID:10459012 RGD
UniProt		 PMID:10459012 PMID:15133481 RGD:4892614 RGD:8554473 NCBI chrNW_004955594:20,496...72,648
Ensembl chrNW_004955594:18,727...72,654 		JBrowse link
G Vamp8 vesicle associated membrane protein 8 located_in ISO (PMID:23217709) RGD
UniProt		 PMID:15133481 PMID:23217709 RGD:4892614 NCBI chrNW_004955424:1,922,830...1,926,844
Ensembl chrNW_004955424:1,923,092...1,926,728 		JBrowse link
G Vps36 vacuolar protein sorting 36 homolog located_in ISO (PMID:17010938) UniProt PMID:17010938 NCBI chrNW_004955431:5,443,050...5,466,577
Ensembl chrNW_004955431:5,443,050...5,463,366 		JBrowse link
G Vps39 VPS39 subunit of HOPS complex located_in ISO (PMID:23167963) UniProt PMID:23167963 NCBI chrNW_004955416:8,893,249...8,936,351
Ensembl chrNW_004955416:8,893,249...8,936,351 		JBrowse link
G Vps41 VPS41 subunit of HOPS complex located_in ISO (PMID:23167963) UniProt PMID:23167963 NCBI chrNW_004955460:4,555,870...4,749,154
Ensembl chrNW_004955460:4,555,870...4,749,153 		JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B located_in ISO (PMID:18033301), (PMID:23217709) UniProt PMID:18033301 PMID:23217709 NCBI chrNW_004955466:2,527,750...2,549,599
Ensembl chrNW_004955466:2,527,753...2,549,568 		JBrowse link
G Wdr81 WD repeat domain 81 located_in ISO (PMID:26783301), (PMID:27126989), (PMID:28404643) UniProt PMID:26783301 PMID:27126989 PMID:28404643 NCBI chrNW_004955481:1,450,127...1,462,564
Ensembl chrNW_004955481:1,449,350...1,462,555 		JBrowse link
G Wdr91 WD repeat domain 91 located_in ISO (PMID:26783301), (PMID:28404643) UniProt PMID:26783301 PMID:28404643 NCBI chrNW_004955494:7,441,880...7,470,174
Ensembl chrNW_004955494:7,441,918...7,468,615 		JBrowse link
Mon1-Ccz1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccz1 CCZ1 homolog, vacuolar protein trafficking and biogenesis associated part_of ISO (PMID:29038162) UniProt PMID:29038162 NCBI chrNW_004955460:13,842,679...13,867,750 JBrowse link
G Mon1a MON1 homolog A, secretory trafficking associated part_of ISO (PMID:29038162) UniProt PMID:29038162 NCBI chrNW_004955532:1,793,233...1,811,675
Ensembl chrNW_004955532:1,790,929...1,812,125 		JBrowse link
G Mon1b MON1 homolog B, secretory trafficking associated part_of ISO (PMID:29038162) UniProt PMID:29038162 NCBI chrNW_004955522:459,961...470,543
Ensembl chrNW_004955522:461,175...468,740 		JBrowse link
G Rmc1 regulator of MON1-CCZ1 part_of ISO (PMID:29038162) UniProt PMID:29038162 NCBI chrNW_004955402:11,676,883...11,699,715
Ensembl chrNW_004955402:11,676,671...11,699,709 		JBrowse link
multivesicular body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acp3 acid phosphatase 3 ISO RGD PMID:977936 RGD:2299977 NCBI chrNW_004955501:6,168,083...6,218,934
Ensembl chrNW_004955501:6,164,152...6,218,967 		JBrowse link
G Atp13a2 ATPase cation transporting 13A2 located_in ISO (PMID:24603074), (PMID:25392495) ParkinsonsUK-UCL PMID:24603074 PMID:25392495 NCBI chrNW_004955527:1,805,854...1,823,623
Ensembl chrNW_004955527:1,806,009...1,823,344 		JBrowse link
G Bace1 beta-secretase 1 located_in ISO (PMID:24612608) UniProt PMID:24612608 NCBI chrNW_004955412:18,596,643...18,620,089
Ensembl chrNW_004955412:18,596,643...18,620,362 		JBrowse link
G Cd74 CD74 molecule located_in ISO (PMID:11854359) MGI PMID:11854359 NCBI chrNW_004955415:4,129,151...4,138,336
Ensembl chrNW_004955415:4,129,254...4,137,826 		JBrowse link
G Cd79a CD79a molecule located_in ISO (PMID:11854359) MGI PMID:11854359 NCBI chrNW_004955555:961,522...965,605
Ensembl chrNW_004955555:961,522...965,605 		JBrowse link
G Crhbp corticotropin releasing hormone binding protein ISO RGD PMID:10524337 RGD:5490549 NCBI chrNW_004955425:23,953,957...23,966,207
Ensembl chrNW_004955425:23,953,912...23,966,352 		JBrowse link
G Crhr1 corticotropin releasing hormone receptor 1 ISO Purkinje cells beginning postnatal day 3 RGD PMID:12911751 RGD:1626245 NCBI chrNW_004955478:10,380,185...10,390,838
Ensembl chrNW_004955478:10,379,287...10,404,825 		JBrowse link
G Cst3 cystatin C ISO RGD PMID:10950881 RGD:2306514 NCBI chrNW_004955415:30,507,972...30,512,109 JBrowse link
G Cst7 cystatin F located_in ISO (PMID:22365146) ARUK-UCL PMID:22365146 NCBI chrNW_004955415:31,082,978...31,086,379
Ensembl chrNW_004955415:31,082,978...31,086,379 		JBrowse link
G Ecpas Ecm29 proteasome adaptor and scaffold located_in ISO (PMID:20682791) UniProt PMID:20682791 NCBI chrNW_004955419:15,775,208...15,886,101
Ensembl chrNW_004955419:15,782,453...15,890,022 		JBrowse link
G Gja1 gap junction protein alpha 1 ISO RGD PMID:16162097 RGD:1582681 NCBI chrNW_004955436:3,612,533...3,618,095
Ensembl chrNW_004955436:3,612,533...3,618,095 		JBrowse link
G Lamp1 lysosomal associated membrane protein 1 located_in ISO (PMID:11854359) RGD
MGI		 PMID:7868367 PMID:11854359 RGD:4892636 NCBI chrNW_004955404:557,090...573,532
Ensembl chrNW_004955404:557,862...573,379 		JBrowse link
G LOC102023843 HLA class II histocompatibility antigen, DM alpha chain located_in ISO (PMID:11854359) MGI PMID:11854359 NCBI chrNW_004955437:1,558,806...1,562,294
Ensembl chrNW_004955437:1,558,911...1,562,162 		JBrowse link
G Lrat lecithin retinol acyltransferase located_in ISO PMID:18544127 RGD
UniProt		 PMID:18544127 RGD:6893660 NCBI chrNW_004955471:2,603,395...2,610,988
Ensembl chrNW_004955471:2,603,678...2,609,079 		JBrowse link
G Prkar1a protein kinase cAMP-dependent type I regulatory subunit alpha located_in ISO (PMID:21502359) MGI PMID:21502359 NCBI chrNW_004955478:4,241,283...4,262,119
Ensembl chrNW_004955478:4,241,283...4,263,087 		JBrowse link
G Prkar1b protein kinase cAMP-dependent type I regulatory subunit beta located_in ISO (PMID:21502359) MGI PMID:21502359 NCBI chrNW_004955460:8,357,890...8,479,875
Ensembl chrNW_004955460:8,357,637...8,460,396 		JBrowse link
G Rab11a RAB11A, member RAS oncogene family located_in ISO (PMID:15634213) UniProt PMID:15634213 NCBI chrNW_004955450:9,638,761...9,656,291
Ensembl chrNW_004955450:9,638,761...9,656,603 		JBrowse link
G Sftpb surfactant protein B ISO RGD PMID:16187065 RGD:4143471 NCBI chrNW_004955424:1,849,313...1,858,087
Ensembl chrNW_004955424:1,849,314...1,858,087 		JBrowse link
G Sftpc surfactant protein C ISO RGD PMID:16187065 RGD:4143471 NCBI chrNW_004955403:45,649,149...45,651,421
Ensembl chrNW_004955403:45,649,122...45,651,837 		JBrowse link
G Sftpd surfactant protein D ISO RGD PMID:16187065 RGD:4143471 NCBI chrNW_004955510:213,468...226,096
Ensembl chrNW_004955510:213,438...225,896 		JBrowse link
G Slc17a8 solute carrier family 17 member 8 ISO RGD PMID:12388773 RGD:625707 NCBI chrNW_004955405:36,063,688...36,115,312
Ensembl chrNW_004955405:36,063,688...36,115,312 		JBrowse link
G Slc2a4 solute carrier family 2 member 4 ISO RGD PMID:1881917 RGD:2306204 NCBI chrNW_004955467:9,630,304...9,636,005
Ensembl chrNW_004955467:9,630,304...9,636,005 		JBrowse link
G Sorl1 sortilin related receptor 1 located_in ISO (PMID:21385844) RGD
UniProt		 PMID:16452683 PMID:21385844 RGD:1581100 NCBI chrNW_004955412:22,421,984...22,576,179
Ensembl chrNW_004955412:22,421,984...22,576,179 		JBrowse link
G Steap3 STEAP3 metalloreductase located_in ISO (PMID:15319436) MGI PMID:15319436 NCBI chrNW_004955459:10,441,906...10,485,235
Ensembl chrNW_004955459:10,441,752...10,485,269 		JBrowse link
G Zp2 zona pellucida glycoprotein 2 located_in ISO (MGI:3690518|PMID:17047254) UniProt PMID:17047254 MGI:3690518 NCBI chrNW_004955493:400,868...412,660
Ensembl chrNW_004955493:400,868...412,596 		JBrowse link
multivesicular body membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb6 ATP binding cassette subfamily B member 6 (LAN blood group) located_in ISO (PMID:25627919) UniProt PMID:25627919 NCBI chrNW_004955453:14,215,104...14,222,338
Ensembl chrNW_004955453:14,215,408...14,222,172 		JBrowse link
G Cd63 CD63 molecule located_in ISO (PMID:26280656) UniProt PMID:26280656 NCBI chrNW_004955458:3,362,511...3,363,916
Ensembl chrNW_004955458:3,362,511...3,363,981 		JBrowse link
G Chmp1a charged multivesicular body protein 1A located_in ISO (PMID:16554368) ComplexPortal PMID:16554368 NCBI chrNW_004955541:3,216,972...3,223,636
Ensembl chrNW_004955541:3,216,972...3,223,634 		JBrowse link
G Chmp1b charged multivesicular body protein 1B located_in ISO (PMID:16554368) ComplexPortal PMID:16554368 NCBI chrNW_004955402:1,196,912...1,199,480 JBrowse link
G Chmp2a charged multivesicular body protein 2A located_in ISO (PMID:16554368) ComplexPortal PMID:16554368 NCBI chrNW_004955584:1,156,828...1,160,056
Ensembl chrNW_004955584:1,156,828...1,160,056 		JBrowse link
G Chmp2b charged multivesicular body protein 2B located_in ISO (PMID:16554368) ComplexPortal PMID:16554368 NCBI chrNW_004955407:6,014,478...6,047,916
Ensembl chrNW_004955407:6,014,478...6,047,916 		JBrowse link
G Chmp4b charged multivesicular body protein 4B located_in ISO (PMID:16554368) ComplexPortal PMID:16554368 NCBI chrNW_004955422:27,482,239...27,526,798
Ensembl chrNW_004955422:27,478,698...27,526,575 		JBrowse link
G Chmp4c charged multivesicular body protein 4C located_in ISO (PMID:16554368) ComplexPortal PMID:16554368 NCBI chrNW_004955417:96,674...135,601
Ensembl chrNW_004955417:96,865...137,739 		JBrowse link
G Chmp6 charged multivesicular body protein 6 located_in ISO (PMID:16554368) ComplexPortal PMID:16554368 NCBI chrNW_004955506:1,987,710...1,994,731
Ensembl chrNW_004955506:1,987,195...1,994,666 		JBrowse link
G Chmp7 charged multivesicular body protein 7 located_in ISO (PMID:16554368) ComplexPortal PMID:16554368 NCBI chrNW_004955403:46,467,463...46,478,897
Ensembl chrNW_004955403:46,467,463...46,478,897 		JBrowse link
G Laptm4b lysosomal protein transmembrane 4 beta located_in ISO (PMID:25588945), (PMID:26280656) UniProt PMID:25588945 PMID:26280656 NCBI chrNW_004955417:13,574,493...13,625,669
Ensembl chrNW_004955417:13,574,721...13,625,313 		JBrowse link
G Nsg2 neuronal vesicle trafficking associated 2 located_in ISO (MGI:70373|PMID:7829526) UniProt PMID:7829526 MGI:70373 NCBI chrNW_004955408:26,664,884...26,724,949
Ensembl chrNW_004955408:26,664,537...26,724,949 		JBrowse link
G Pmel premelanosome protein located_in ISO (PMID:11694580) UniProt PMID:11694580 NCBI chrNW_004955458:3,544,855...3,555,453
Ensembl chrNW_004955458:3,544,961...3,554,619 		JBrowse link
G Rab27a RAB27A, member RAS oncogene family located_in ISO (PMID:19966785) UniProt PMID:19966785 NCBI chrNW_004955409:588,725...621,874
Ensembl chrNW_004955409:588,254...621,874 		JBrowse link
G Rab27b RAB27B, member RAS oncogene family located_in ISO (PMID:19966785) UniProt PMID:19966785 NCBI chrNW_004955402:39,357,500...39,415,530
Ensembl chrNW_004955402:39,357,500...39,415,530 		JBrowse link
G Slc9a8 solute carrier family 9 member A8 located_in ISO (PMID:20719963) UniProt PMID:20719963 NCBI chrNW_004955445:8,308,847...8,384,146
Ensembl chrNW_004955445:8,312,477...8,383,969 		JBrowse link
G Tmem9 transmembrane protein 9 located_in ISO (PMID:30374053) UniProt PMID:30374053 NCBI chrNW_004955406:37,279,885...37,299,196
Ensembl chrNW_004955406:37,279,694...37,314,251 		JBrowse link
multivesicular body, internal vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoe apolipoprotein E located_in ISO (PMID:26387950) UniProt PMID:26387950 NCBI chrNW_004955555:1,998,170...2,002,003
Ensembl chrNW_004955555:1,999,711...2,001,888 		JBrowse link
G Cd63 CD63 molecule located_in ISO (PMID:21962903), (PMID:26280656), (PMID:26387950) UniProt PMID:21962903 PMID:26280656 PMID:26387950 NCBI chrNW_004955458:3,362,511...3,363,916
Ensembl chrNW_004955458:3,362,511...3,363,981 		JBrowse link
G Laptm4b lysosomal protein transmembrane 4 beta located_in ISO (PMID:26280656) UniProt PMID:26280656 NCBI chrNW_004955417:13,574,493...13,625,669
Ensembl chrNW_004955417:13,574,721...13,625,313 		JBrowse link
G Lrrk2 leucine rich repeat kinase 2 located_in ISO (PMID:19640926) ParkinsonsUK-UCL PMID:19640926 NCBI chrNW_004955505:84,324...216,923
Ensembl chrNW_004955505:81,796...216,923 		JBrowse link
G Pmel premelanosome protein located_in ISO (PMID:26387950) UniProt PMID:26387950 NCBI chrNW_004955458:3,544,855...3,555,453
Ensembl chrNW_004955458:3,544,961...3,554,619 		JBrowse link
multivesicular body, internal vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egfr epidermal growth factor receptor located_in ISO (PMID:17714434) UniProt PMID:17714434 NCBI chrNW_004955456:321,222...456,431 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 12554
    cellular anatomical entity 12397
      endomembrane system 3127
        endosome 714
          late endosome 208
            Mon1-Ccz1 complex 4
            late endosome lumen + 0
            late endosome membrane + 65
            multivesicular body + 45
Path 2
Term Annotations click to browse term
  cellular_component 12554
    cellular anatomical entity 12397
      organelle 9788
        membrane-bounded organelle 8925
          vesicle 1619
            intracellular vesicle 1494
              cytoplasmic vesicle 1488
                endosome 714
                  late endosome 208
                    Mon1-Ccz1 complex 4
                    late endosome lumen + 0
                    late endosome membrane + 65
                    multivesicular body + 45
paths to the root