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ONTOLOGY REPORT - ANNOTATIONS


Term:late endosome
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Accession:GO:0005770 term browser browse the term
Definition:A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center.
Synonyms:exact_synonym: prevacuolar compartment
 broad_synonym: PVC
 xref: NIF_Subcellular:nlx_subcell_20090702


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late endosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA5 ATP binding cassette subfamily A member 5 ISO (MGI:MGI:3581349|PMID:15870284) BHF-UCL PMID:15870284 MGI:MGI:3581349 NCBI chr17:63,172,670...63,255,587
Ensembl chr17:68,563,702...68,629,791
JBrowse link
G ANKRD13A ankyrin repeat domain 13A ISO (PMID:22298428) UniProt PMID:22298428 NCBI chr12:107,575,427...107,615,706
Ensembl chr12:110,979,786...111,007,899
JBrowse link
G ANKRD13B ankyrin repeat domain 13B ISO (PMID:22298428) UniProt PMID:22298428 NCBI chr17:27,159,796...27,181,528
Ensembl chr17:27,676,809...27,684,253
JBrowse link
G ANKRD27 ankyrin repeat domain 27 ISO (PMID:24856514) UniProtKB PMID:24856514 NCBI chr19:29,516,853...29,594,519
Ensembl chr19:38,264,485...38,342,604
JBrowse link
G AP5M1 adaptor related protein complex 5 subunit mu 1 ISO (PMID:22022230) UniProtKB PMID:22022230 NCBI chr14:37,839,766...37,869,926
Ensembl chr14:56,110,452...56,131,921
JBrowse link
G APOE apolipoprotein E ISO RGD PMID:7806565 RGD:1626382 NCBI chr19:41,853,669...41,857,252
Ensembl chr19:50,459,906...50,463,490
JBrowse link
G ARF1 ADP ribosylation factor 1 ISO RGD PMID:21421027 RGD:9684860 NCBI chr 1:203,484,803...203,501,395
Ensembl chr 1:208,695,615...208,712,105
JBrowse link
G ATG9A autophagy related 9A ISO (PMID:22456507) RGD
MGI
PMID:16940348, PMID:22456507 RGD:4889884 NCBI chr2B:106,477,007...106,487,249
Ensembl chr2B:225,067,590...225,078,065
JBrowse link
G ATP13A2 ATPase cation transporting 13A2 ISO (PMID:25392495) ParkinsonsUK-UCL PMID:25392495 NCBI chr 1:15,929,613...15,955,631
Ensembl chr 1:16,986,385...17,006,033
Ensembl chr 1:16,986,385...17,006,033
JBrowse link
G ATP7A ATPase copper transporting alpha ISO (PMID:8943055) RGD
UniProtKB
PMID:8943055, PMID:16741141 RGD:1599391 NCBI chr  X:67,093,675...67,231,318
Ensembl chr  X:77,255,312...77,342,756
JBrowse link
G ATP7B ATPase copper transporting beta ISO (PMID:15681833) UniProtKB
RGD
PMID:15681833, PMID:16741141 RGD:1599391 NCBI chr13:33,063,698...33,144,528
Ensembl chr13:51,810,555...51,851,839
JBrowse link
G BACE1 beta-secretase 1 ISO (PMID:16033761), (PMID:23109336), (PMID:24612608), (PMID:27084579), (PMID:27302062) UniProt PMID:16033761, PMID:23109336, PMID:24612608, PMID:27084579, PMID:27302062 NCBI chr11:112,120,950...112,151,505
Ensembl chr11:116,054,303...116,084,812
JBrowse link
G CD1D CD1d molecule ISO (MGI:MGI:3041278|PMID:11754812) MGI PMID:11754812 MGI:MGI:3041278 NCBI chr 1:133,549,258...133,557,752
Ensembl chr 1:137,341,690...137,348,173
JBrowse link
G CD63 CD63 molecule ISO (MGI:MGI:3042340|PMID:14668490), (MGI:MGI:5804716|PMID:27435297) MGI PMID:14668490, PMID:27435297 MGI:MGI:3042340, MGI:MGI:5804716 NCBI chr12:33,181,896...33,186,123
Ensembl chr12:33,906,314...33,910,595
JBrowse link
G CD74 CD74 molecule ISO (MGI:MGI:3054306|PMID:15294975), (MGI:MGI:3691984|PMID:11483509) MGI PMID:11483509, PMID:15294975 MGI:MGI:3054306, MGI:MGI:3691984 NCBI chr 5:145,825,635...145,836,916
Ensembl chr 5:151,830,311...151,841,334
JBrowse link
G CHID1 chitinase domain containing 1 ISO (PMID:16357325) UniProtKB PMID:16357325 NCBI chr11:888,660...930,901
Ensembl chr11:929,278...977,082
JBrowse link
G CHMP2B charged multivesicular body protein 2B colocalizes_with ISO (PMID:16041373) UniProtKB PMID:16041373 NCBI chr 3:87,358,297...87,386,556
Ensembl chr 3:89,471,993...89,501,241
JBrowse link
G CLCN3 chloride voltage-gated channel 3 ISO (PMID:12471024) UniProtKB PMID:12471024 NCBI chr 4:161,838,061...161,943,072
Ensembl chr 4:173,925,474...174,011,681
JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin ISO (PMID:23840424)
(PMID:10332042), (PMID:15471887), (PMID:22261744)
(MGI:MGI:3527911|PMID:15588329)
UniProt
MGI
PMID:10332042, PMID:15471887, PMID:15588329, PMID:22261744, PMID:23840424 MGI:MGI:3527911
G CLTCL1 clathrin heavy chain like 1 ISO (PMID:20065094) UniProtKB PMID:20065094 NCBI chr22:1,934,948...2,050,159
Ensembl chr22:17,613,828...17,726,231
JBrowse link
G CST7 cystatin F ISO (MGI:MGI:6294233|PMID:15212960) ARUK-UCL PMID:15212960 MGI:MGI:6294233 NCBI chr20:24,889,834...24,900,766
Ensembl chr20:25,237,251...25,248,364
JBrowse link
G CTNS cystinosin, lysosomal cystine transporter ISO (PMID:15128704) UniProtKB PMID:15128704 NCBI chr17:3,686,903...3,711,857
Ensembl chr17:3,683,575...3,708,253
JBrowse link
G CTSS cathepsin S ISO (PMID:22365146) ARUK-UCL PMID:22365146 NCBI chr 1:126,084,249...126,118,221
Ensembl chr 1:129,733,996...129,768,318
JBrowse link
G CXCR4 C-X-C motif chemokine receptor 4 ISO (PMID:21540189) UniProtKB PMID:21540189 NCBI chr2B:23,744,271...23,748,106
Ensembl chr2B:140,181,829...140,189,647
JBrowse link
G DDIT3 DNA damage inducible transcript 3 ISO (MGI:MGI:5466421|PMID:23028046) MGI PMID:23028046 MGI:MGI:5466421 NCBI chr12:31,406,332...31,410,293
Ensembl chr12:31,664,743...31,668,701
JBrowse link
G DENND10 DENN domain containing 10 ISO (PMID:30771381) UniProt PMID:30771381 NCBI chr10:115,677,737...115,708,548
Ensembl chr10:119,101,448...119,131,446
JBrowse link
G DERL1 derlin 1 ISO (MGI:MGI:4361100|PMID:19509052) MGI PMID:19509052 MGI:MGI:4361100 NCBI chr 8:119,707,397...119,736,502
Ensembl chr 8:122,463,063...122,492,137
JBrowse link
G DERL2 derlin 2 ISO (MGI:MGI:4361100|PMID:19509052) MGI PMID:19509052 MGI:MGI:4361100 NCBI chr17:5,519,183...5,534,145
Ensembl chr17:5,514,440...5,526,363
JBrowse link
G DYNC1LI1 dynein cytoplasmic 1 light intermediate chain 1 colocalizes_with ISO RGD PMID:21169557 RGD:13207422 NCBI chr 3:32,450,693...32,495,400
Ensembl chr 3:32,758,407...32,804,117
JBrowse link
G DYNC1LI2 dynein cytoplasmic 1 light intermediate chain 2 colocalizes_with ISO RGD PMID:21169557 RGD:13207422 NCBI chr16:47,038,975...47,069,849
Ensembl chr16:66,141,323...66,170,693
JBrowse link
G DYSF dysferlin ISO (PMID:20595382) UniProtKB PMID:20595382 NCBI chr2A:71,495,573...71,730,073
Ensembl chr2A:72,994,888...73,228,846
JBrowse link
G ECPAS Ecm29 proteasome adaptor and scaffold ISO (PMID:15496406) UniProtKB PMID:15496406 NCBI chr 9:82,499,075...82,623,007
Ensembl chr 9:110,662,590...110,786,472
JBrowse link
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 colocalizes_with ISO (PMID:21072319) BHF-UCL PMID:21072319 NCBI chr 1:111,490,488...111,583,703
Ensembl chr 1:110,654,844...110,744,323
JBrowse link
G EXOC8 exocyst complex component 8 ISO (PMID:24344185) UniProtKB PMID:24344185 NCBI chr 1:206,884,334...206,889,753
Ensembl chr 1:211,911,802...211,913,979
JBrowse link
G F2R coagulation factor II thrombin receptor ISO (PMID:24732013) UniProtKB PMID:24732013 NCBI chr 5:38,565,957...38,585,725
Ensembl chr 5:39,110,170...39,129,688
JBrowse link
G FYCO1 FYVE and coiled-coil domain autophagy adaptor 1 ISO (PMID:20100911) UniProtKB PMID:20100911 NCBI chr 3:45,825,670...45,903,595
Ensembl chr 3:46,932,148...47,009,676
JBrowse link
G GJA1 gap junction protein alpha 1 ISO RGD PMID:16162097 RGD:1582681 NCBI chr 6:119,213,513...119,227,617 JBrowse link
G GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 ISO (MGI:MGI:1355569|PMID:10777580) MGI PMID:10777580 MGI:MGI:1355569 NCBI chr14:33,371,603...33,388,098
Ensembl chr14:51,655,182...51,671,619
JBrowse link
G GRIN2B glutamate ionotropic receptor NMDA type subunit 2B ISO (MGI:MGI:6370252|PMID:31424425) UniProt PMID:31424425 MGI:MGI:6370252 NCBI chr12:13,543,104...13,987,437
Ensembl chr12:13,969,387...14,388,799
JBrowse link
G GRN granulin precursor ISO (PMID:26370502) UniProt PMID:26370502 NCBI chr17:13,046,329...13,054,236
Ensembl chr17:13,211,784...13,219,609
JBrowse link
G HSPA8 heat shock protein family A (Hsp70) member 8 ISO (MGI:MGI:5700294|PMID:21238931) ParkinsonsUK-UCL PMID:21238931 MGI:MGI:5700294 NCBI chr11:117,890,545...117,895,262
Ensembl chr11:121,809,800...121,815,773
JBrowse link
G HTT huntingtin ISO (PMID:17704510) UniProtKB PMID:17704510 NCBI chr 4:3,215,081...3,388,587
Ensembl chr 4:3,128,718...3,283,730
JBrowse link
G IGF2R insulin like growth factor 2 receptor ISO (PMID:22456507) RGD
MGI
PMID:19337031, PMID:22456507 RGD:4892338 NCBI chr 6:157,852,565...157,990,049
Ensembl chr 6:162,878,661...162,997,762
JBrowse link
G IRGM immunity related GTPase M ISO (MGI:MGI:3656111|PMID:16888103), (MGI:MGI:4430426|PMID:20072621) UniProtKB PMID:16888103, PMID:20072621 MGI:MGI:3656111, MGI:MGI:4430426 NCBI chr 5:146,274,097...146,329,979
Ensembl chr 5:152,278,581...152,308,182
JBrowse link
G KCNQ1 potassium voltage-gated channel subfamily Q member 1 ISO (PMID:21957902) BHF-UCL PMID:21957902 NCBI chr11:2,469,750...2,874,467 JBrowse link
G KIDINS220 kinase D interacting substrate 220 ISO PMID:17724123 UniProt PMID:17724123 RGD:8554481 NCBI chr2A:8,720,780...8,837,136
Ensembl chr2A:8,892,960...8,992,777
JBrowse link
G LAMP1 lysosomal associated membrane protein 1 ISO (MGI:MGI:2449836|PMID:12446704), (MGI:MGI:3042340|PMID:14668490), (MGI:MGI:3054306|PMID:15294975), (MGI:MGI:3615690|PMID:16415873), (MGI:MGI:3758128|PMID:17620357), (MGI:MGI:3790551|PMID:18477453), (MGI:MGI:5609900|PMID:24841562)
(PMID:15052268), (PMID:15292400), (PMID:15792797), (PMID:16542649), (PMID:18388320), (PMID:18767904)
MGI
UniProtKB
PMID:12446704, PMID:14668490, PMID:15052268, PMID:15292400, PMID:15294975, PMID:15792797, PMID:16415873, PMID:16542649, PMID:17620357, PMID:18388320, PMID:18477453, PMID:18767904, PMID:24841562 MGI:MGI:2449836, MGI:MGI:3042340, MGI:MGI:3054306, MGI:MGI:3615690, MGI:MGI:3758128, MGI:MGI:3790551, MGI:MGI:5609900 NCBI chr13:94,442,507...94,464,061
Ensembl chr13:113,507,401...113,530,457
JBrowse link
G LAMP2 lysosomal associated membrane protein 2 ISO (PMID:15229288)
(MGI:MGI:3042340|PMID:14668490)
MGI PMID:14668490, PMID:15229288 MGI:MGI:3042340 NCBI chr  X:109,700,185...109,743,579
Ensembl chr  X:119,886,982...119,929,896
JBrowse link
G LAMP5 lysosomal associated membrane protein family member 5 ISO (MGI:MGI:5751042|PMID:25592972) MGI PMID:25592972 MGI:MGI:5751042 NCBI chr20:9,487,971...9,503,912
Ensembl chr20:9,489,849...9,506,137
JBrowse link
G LAMTOR2 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 ISO (MGI:MGI:3693387|PMID:15263099), (MGI:MGI:4887551|PMID:19177150), (MGI:MGI:5609900|PMID:24841562) MGI PMID:15263099, PMID:19177150, PMID:24841562 MGI:MGI:3693387, MGI:MGI:4887551, MGI:MGI:5609900 NCBI chr 1:131,396,937...131,400,695
Ensembl chr 1:135,226,400...135,230,167
JBrowse link
G LAMTOR3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 ISO (MGI:MGI:3693387|PMID:15263099), (MGI:MGI:4887551|PMID:19177150), (MGI:MGI:5609900|PMID:24841562) MGI PMID:15263099, PMID:19177150, PMID:24841562 MGI:MGI:3693387, MGI:MGI:4887551, MGI:MGI:5609900 NCBI chr 4:92,304,115...92,317,461
Ensembl chr 4:102,965,111...102,978,205
JBrowse link
G LDLR low density lipoprotein receptor ISO (MGI:MGI:3619161|PMID:11092755)
(PMID:17461796)
MGI
UniProtKB
PMID:11092755, PMID:17461796 MGI:MGI:3619161 NCBI chr19:10,640,225...10,683,728
Ensembl chr19:11,357,311...11,396,791
JBrowse link
G LGMN legumain ISO (MGI:MGI:2673081|PMID:12775715) MGI PMID:12775715 MGI:MGI:2673081 NCBI chr14:73,337,607...73,383,462
Ensembl chr14:92,677,608...92,723,051
JBrowse link
G LIPC lipase C, hepatic type ISO RGD PMID:14701798 RGD:1625029 NCBI chr15:37,363,507...37,537,723
Ensembl chr15:55,814,017...55,847,005
JBrowse link
G LOC100968989 HLA class II histocompatibility antigen, DM alpha chain ISO (MGI:MGI:3033762|PMID:7985028), (MGI:MGI:3033877|PMID:7584146) MGI PMID:7584146, PMID:7985028 MGI:MGI:3033762, MGI:MGI:3033877 NCBI chr 6:32,518,060...32,537,989
Ensembl chr 6:33,634,123...33,637,988
JBrowse link
G LOC100970314 charged multivesicular body protein 3 ISO (PMID:16554368) RGD
ParkinsonsUK-UCL
PMID:16554368, PMID:18076377 RGD:4892661 NCBI chr2A:86,559,695...86,619,615 JBrowse link
G LOC100995326 serotransferrin ISO (PMID:15880641) UniProtKB PMID:15880641 NCBI chr 3:130,799,063...130,830,227
Ensembl chr 3:138,274,159...138,305,476
JBrowse link
G M6PR mannose-6-phosphate receptor, cation dependent ISO (MGI:MGI:2388930|PMID:12388596) MGI PMID:12388596 MGI:MGI:2388930 NCBI chr12:9,025,394...9,034,768
Ensembl chr12:9,256,706...9,266,428
JBrowse link
G MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 ISO PMID:17724123 UniProt PMID:17724123 RGD:8554481 NCBI chr 7:69,943,704...71,395,176
Ensembl chr 7:83,758,512...84,760,872
JBrowse link
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha ISO RGD PMID:19337031 RGD:4892338 NCBI chr20:30,887,345...30,888,986
Ensembl chr20:32,010,284...32,020,411
JBrowse link
G MCOLN1 mucolipin 1 ISO (PMID:21224396) UniProtKB PMID:21224396 NCBI chr19:6,813,498...6,825,153
Ensembl chr19:7,671,704...7,683,093
JBrowse link
G MFSD12 major facilitator superfamily domain containing 12 ISO (PMID:29025994) CACAO PMID:29025994 NCBI chr19:2,570,068...2,583,505
Ensembl chr19:3,520,399...3,532,767
JBrowse link
G MHC-DMB HLA class II histocompatibility antigen, DM beta chain ISO (MGI:MGI:3033877|PMID:7584146) MGI PMID:7584146 MGI:MGI:3033877 NCBI chr 6:32,504,074...32,510,669
Ensembl chr 6:33,619,870...33,625,685
JBrowse link
G MICALL1 MICAL like 1 ISO (PMID:21795389) UniProtKB PMID:21795389 NCBI chr22:18,821,562...18,857,261
Ensembl chr22:36,646,377...36,684,644
JBrowse link
G MTM1 myotubularin 1 ISO (PMID:14722070) UniProtKB PMID:14722070 NCBI chr  X:140,218,742...140,323,495
Ensembl chr  X:150,174,758...150,255,381
JBrowse link
G MVB12B multivesicular body subunit 12B ISO (PMID:22232651) UniProtKB PMID:22232651 NCBI chr 9:97,444,439...97,624,085
Ensembl chr 9:125,953,845...126,133,369
JBrowse link
G MYO5A myosin VA colocalizes_with ISO (PMID:24006491) UniProtKB PMID:24006491 NCBI chr15:31,246,192...31,470,040
Ensembl chr15:49,578,491...49,704,319
JBrowse link
G NBR1 NBR1 autophagy cargo receptor ISO (MGI:MGI:3837054|PMID:19250911) UniProtKB PMID:19250911 MGI:MGI:3837054 NCBI chr17:14,119,638...14,197,827
Ensembl chr17:14,351,229...14,390,597
JBrowse link
G NMNAT2 nicotinamide nucleotide adenylyltransferase 2 ISO (MGI:MGI:4868574|PMID:20943658) MGI PMID:20943658 MGI:MGI:4868574 NCBI chr 1:158,768,949...158,948,711
Ensembl chr 1:162,929,609...163,105,524
JBrowse link
G NSG1 neuronal vesicle trafficking associated 1 ISO PMID:28874679
(MGI:MGI:6094363|PMID:28874679)
UniProt
UniProtKB
PMID:28874679 MGI:MGI:6094363, RGD:13432228 Ensembl chr 4:4,467,234...4,496,088 JBrowse link
G OSBPL1A oxysterol binding protein like 1A ISO (PMID:16176980) UniProtKB PMID:16176980 NCBI chr18:17,414,824...17,669,178
Ensembl chr18:21,037,586...21,270,216
JBrowse link
G PARM1 prostate androgen-regulated mucin-like protein 1 ISO (PMID:18027867) UniProtKB PMID:18027867 NCBI chr 4:49,153,654...49,270,384
Ensembl chr 4:54,987,767...55,104,461
JBrowse link
G PCSK9 proprotein convertase subtilisin/kexin type 9 ISO (PMID:17461796), (PMID:18039658) UniProtKB PMID:17461796, PMID:18039658 NCBI chr 1:54,323,036...54,355,397
Ensembl chr 1:55,911,016...55,936,456
JBrowse link
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 ISO (PMID:14617358) UniProtKB PMID:14617358 NCBI chr18:35,203,896...35,336,512
Ensembl chr18:38,754,789...38,882,037
JBrowse link
G PIK3R4 phosphoinositide-3-kinase regulatory subunit 4 ISO (PMID:14617358) UniProtKB PMID:14617358 NCBI chr 3:127,743,873...127,834,512
Ensembl chr 3:135,089,584...135,157,193
JBrowse link
G PSAP prosaposin ISO (PMID:26370502) UniProt PMID:26370502 NCBI chr10:68,286,359...68,321,349
Ensembl chr10:70,810,881...70,828,781
JBrowse link
G RAB14 RAB14, member RAS oncogene family ISO PMID:15004230 UniProt PMID:15004230 RGD:8554557 NCBI chr 9:92,305,656...92,329,419
Ensembl chr 9:120,654,180...120,666,170
JBrowse link
G RAB27A RAB27A, member RAS oncogene family ISO (PMID:17237785), (PMID:30771381) UniProt PMID:17237785, PMID:30771381 NCBI chr15:34,174,491...34,263,045
Ensembl chr15:52,498,202...52,529,984
JBrowse link
G RAB27B RAB27B, member RAS oncogene family ISO (PMID:30771381) UniProt PMID:30771381 NCBI chr18:48,099,912...48,274,416
Ensembl chr18:51,542,842...51,604,061
JBrowse link
G RAB31 RAB31, member RAS oncogene family colocalizes_with ISO RGD PMID:11746448 RGD:2316821 NCBI chr18:4,424,677...4,578,263
Ensembl chr18:6,710,174...6,859,896
JBrowse link
G RAB34 RAB34, member RAS oncogene family ISO (MGI:MGI:5467668|PMID:23197834) ParkinsonsUK-UCL PMID:23197834 MGI:MGI:5467668 NCBI chr17:28,057,077...28,061,234
Ensembl chr17:28,562,118...28,566,242
JBrowse link
G RAB7A RAB7A, member RAS oncogene family colocalizes_with ISO (MGI:MGI:2387806|PMID:11172003), (MGI:MGI:3527911|PMID:15588329), (MGI:MGI:4361100|PMID:19509052), (MGI:MGI:4868574|PMID:20943658), (MGI:MGI:5466421|PMID:23028046), (MGI:MGI:5515840|PMID:24035762), (MGI:MGI:5565633|PMID:24334765), (MGI:MGI:5571523|PMID:24760869), (MGI:MGI:5751042|PMID:25592972), (MGI:MGI:5883184|PMID:27390154)
(PMID:18272684)
(PMID:14617358), (PMID:15078902), (PMID:17010938)
MGI
RGD
BHF-UCL
UniProtKB
PMID:11172003, PMID:14617358, PMID:15078902, PMID:15588329, PMID:17010938, PMID:18272684, PMID:19337031, PMID:19509052, PMID:20943658, PMID:23028046, PMID:24035762, PMID:24334765, PMID:24760869, PMID:25592972, PMID:27390154 MGI:MGI:2387806, MGI:MGI:3527911, MGI:MGI:4361100, MGI:MGI:4868574, MGI:MGI:5466421, MGI:MGI:5515840, MGI:MGI:5565633, MGI:MGI:5571523, MGI:MGI:5751042, MGI:MGI:5883184, RGD:4892338 NCBI chr 3:125,784,604...125,873,051 JBrowse link
G RAB7B RAB7B, member RAS oncogene family ISO (MGI:MGI:3834524|PMID:17395780), (MGI:MGI:4355098|PMID:19587007)
(PMID:20375062)
UniProtKB PMID:17395780, PMID:19587007, PMID:20375062 MGI:MGI:3834524, MGI:MGI:4355098 NCBI chr 1:181,584,814...181,611,831
Ensembl chr 1:185,867,145...185,894,691
JBrowse link
G RAB9A RAB9A, member RAS oncogene family ISO (PMID:15078902) MGI PMID:15078902 NCBI chr  X:6,296,483...6,317,826
Ensembl chr  X:13,604,454...13,605,059
JBrowse link
G RAP1A RAP1A, member of RAS oncogene family ISO PMID:17724123 UniProt PMID:17724123 RGD:8554481 NCBI chr 1:114,279,255...114,376,977
Ensembl chr 1:125,971,598...125,994,813
JBrowse link
G RAPGEF2 Rap guanine nucleotide exchange factor 2 ISO (PMID:17724123) UniProtKB PMID:17724123 NCBI chr 4:151,419,402...151,680,769
Ensembl chr 4:163,316,396...163,487,495
JBrowse link
G RHOB ras homolog family member B ISO (MGI:MGI:3723332|PMID:17623777) MGI PMID:17623777 MGI:MGI:3723332 NCBI chr2A:20,433,576...20,435,986
Ensembl chr2A:20,549,254...20,549,844
JBrowse link
G RILP Rab interacting lysosomal protein ISO (PMID:17010938), (PMID:18272684) UniProtKB PMID:17010938, PMID:18272684 NCBI chr17:1,631,518...1,635,464 JBrowse link
G RNF128 ring finger protein 128 ISO (MGI:MGI:2656456|PMID:12705856) MGI PMID:12705856 MGI:MGI:2656456 NCBI chr  X:95,796,407...95,898,023
Ensembl chr  X:106,174,269...106,275,992
JBrowse link
G RUBCN rubicon autophagy regulator ISO (PMID:19270696) UniProtKB PMID:19270696 NCBI chr 3:195,088,936...195,166,771
Ensembl chr 3:204,973,968...205,034,011
JBrowse link
G RUFY1 RUN and FYVE domain containing 1 NOT ISO (MGI:MGI:2387806|PMID:11172003) MGI PMID:11172003 MGI:MGI:2387806 NCBI chr 5:174,699,240...174,760,876
Ensembl chr 5:181,978,601...182,039,332
JBrowse link
G SDF4 stromal cell derived factor 4 ISO PMID:17442889
(MGI:MGI:80005|PMID:8609160)
BHF-UCL PMID:8609160, PMID:17442889 MGI:MGI:80005, RGD:2312426
G SIGLEC1 sialic acid binding Ig like lectin 1 ISO (PMID:21359217) AgBase PMID:21359217 NCBI chr20:3,769,118...3,795,678
Ensembl chr20:3,526,791...3,552,309
JBrowse link
G SLA2 Src like adaptor 2 ISO (MGI:MGI:2180273|PMID:12024036) MGI PMID:12024036 MGI:MGI:2180273 NCBI chr20:32,945,409...32,978,966
Ensembl chr20:34,065,385...34,098,581
JBrowse link
G SLC11A1 solute carrier family 11 member 1 ISO (MGI:MGI:3695780|PMID:16905747), (MGI:MGI:3758128|PMID:17620357)
(MGI:MGI:86330|PMID:9034150)
MGI PMID:9034150, PMID:16905747, PMID:17620357 MGI:MGI:3695780, MGI:MGI:3758128, MGI:MGI:86330 NCBI chr2B:105,640,613...105,655,524
Ensembl chr2B:224,238,284...224,252,941
JBrowse link
G SLC11A2 solute carrier family 11 member 2 ISO (PMID:12475959), (PMID:15792797), (PMID:18776082) UniProtKB PMID:12475959, PMID:15792797, PMID:18776082 NCBI chr12:37,726,158...37,774,554
Ensembl chr12:38,629,686...38,677,377
JBrowse link
G SLC30A2 solute carrier family 30 member 2 ISO (PMID:17349999) BHF-UCL PMID:17349999 NCBI chr 1:25,296,643...25,304,751
Ensembl chr 1:26,359,575...26,370,803
JBrowse link
G SLC30A3 solute carrier family 30 member 3 ISO (PMID:17349999) BHF-UCL PMID:17349999 NCBI chr2A:27,255,944...27,276,720
Ensembl chr2A:27,344,045...27,353,543
JBrowse link
G SLC30A4 solute carrier family 30 member 4 ISO (PMID:17349999) BHF-UCL PMID:17349999 NCBI chr15:24,425,816...24,469,085
Ensembl chr15:42,758,455...42,798,815
JBrowse link
G SLC31A1 solute carrier family 31 member 1 ISO (MGI:MGI:5523354|PMID:24167251) MGI PMID:24167251 MGI:MGI:5523354 NCBI chr 9:84,319,304...84,362,288
Ensembl chr 9:112,691,503...112,734,352
JBrowse link
G SLC31A2 solute carrier family 31 member 2 ISO (MGI:MGI:5523354|PMID:24167251) MGI PMID:24167251 MGI:MGI:5523354 NCBI chr 9:84,249,284...84,271,596
Ensembl chr 9:112,622,147...112,635,294
JBrowse link
G SLC38A9 solute carrier family 38 member 9 ISO (PMID:25561175) UniProtKB PMID:25561175 NCBI chr 5:58,312,101...58,397,365
Ensembl chr 5:59,944,034...60,020,769
JBrowse link
G SLC9A6 solute carrier family 9 member A6 ISO (MGI:MGI:5515840|PMID:24035762) MGI PMID:24035762 MGI:MGI:5515840 NCBI chr  X:125,099,378...125,171,161
Ensembl chr  X:135,378,094...135,439,781
JBrowse link
G SNX14 sorting nexin 14 ISO (PMID:25848753) UniProtKB PMID:25848753 NCBI chr 6:83,389,608...83,477,859
Ensembl chr 6:86,671,608...86,759,118
JBrowse link
G SNX16 sorting nexin 16 ISO (PMID:12813048) UniProtKB PMID:12813048 NCBI chr 8:78,324,407...78,367,143
Ensembl chr 8:79,944,729...79,987,430
JBrowse link
G SPPL2A signal peptide peptidase like 2A ISO (PMID:16829952) UniProtKB PMID:16829952 NCBI chr15:29,660,190...29,718,477
Ensembl chr15:47,997,304...48,055,239
JBrowse link
G SRC SRC proto-oncogene, non-receptor tyrosine kinase ISO (PMID:20605918) UniProtKB PMID:20605918 NCBI chr20:33,667,614...33,727,126
Ensembl chr20:34,822,271...34,839,634
JBrowse link
G STX7 syntaxin 7 ISO (PMID:18980942), (PMID:21438968) UniProtKB PMID:18980942, PMID:21438968 NCBI chr 6:130,232,041...130,289,326
Ensembl chr 6:134,342,304...134,398,215
JBrowse link
G STX8 syntaxin 8 ISO (PMID:10564279) UniProtKB PMID:10564279 NCBI chr17:42,076,600...42,403,334
Ensembl chr17:46,816,859...47,141,816
JBrowse link
G TCIRG1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 ISO (MGI:MGI:2664004|PMID:12672822), (MGI:MGI:3850356|PMID:19549681) MGI PMID:12672822, PMID:19549681 MGI:MGI:2664004, MGI:MGI:3850356 NCBI chr11:63,120,913...63,132,831
Ensembl chr11:66,429,435...66,441,327
JBrowse link
G TICAM2 toll like receptor adaptor molecule 2 ISO (PMID:19412184) UniProtKB PMID:19412184 NCBI chr 5:110,935,649...110,960,019
Ensembl chr 5:116,734,092...116,734,799
JBrowse link
G TMEM192 transmembrane protein 192 ISO (PMID:20370317) UniProtKB PMID:20370317 NCBI chr 4:157,269,816...157,304,743
Ensembl chr 4:169,318,179...169,427,945
JBrowse link
G TMEM230 transmembrane protein 230 ISO (PMID:27270108) UniProtKB PMID:27270108 NCBI chr20:5,119,775...5,133,079
Ensembl chr20:4,882,980...4,925,869
JBrowse link
G TMEM25 transmembrane protein 25 ISO (MGI:MGI:6370252|PMID:31424425) UniProt PMID:31424425 MGI:MGI:6370252 NCBI chr11:113,368,595...113,384,290
Ensembl chr11:117,299,183...117,314,494
JBrowse link
G TMEM59 transmembrane protein 59 ISO (PMID:23376921) UniProtKB PMID:23376921 NCBI chr 1:53,305,154...53,326,975
Ensembl chr 1:54,899,026...54,920,478
JBrowse link
G TMEM9 transmembrane protein 9 ISO (PMID:12359240) UniProtKB PMID:12359240 NCBI chr 1:176,734,640...176,771,476
Ensembl chr 1:181,037,050...181,056,841
JBrowse link
G TRAPPC9 trafficking protein particle complex 9 NOT ISO (MGI:MGI:4438815|PMID:20004763) MGI PMID:20004763 MGI:MGI:4438815 NCBI chr 8:136,402,736...137,180,507
Ensembl chr 8:139,644,041...140,214,782
JBrowse link
G TSG101 tumor susceptibility 101 ISO (PMID:15126635) BHF-UCL PMID:15126635 NCBI chr11:18,518,110...18,564,814
Ensembl chr11:18,189,868...18,248,149
JBrowse link
G TTPA alpha tocopherol transfer protein ISO RGD PMID:14531858 RGD:1600431 NCBI chr 8:59,591,592...59,619,658
Ensembl chr 8:61,266,954...61,293,699
JBrowse link
G UVRAG UV radiation resistance associated ISO (PMID:19270696) UniProtKB PMID:19270696 NCBI chr11:70,870,341...71,197,559
Ensembl chr11:74,172,919...74,496,046
JBrowse link
G VAMP5 vesicle associated membrane protein 5 ISO (MGI:MGI:1858282|PMID:9725904) BHF-UCL PMID:9725904 MGI:MGI:1858282 NCBI chr2A:85,634,555...85,646,120
Ensembl chr2A:87,187,569...87,196,532
JBrowse link
G VIPAS39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog ISO (PMID:19109425) UniProtKB PMID:19109425 NCBI chr14:57,982,041...58,013,037
Ensembl chr14:77,183,185...77,213,382
JBrowse link
G VPS11 VPS11 core subunit of CORVET and HOPS complexes colocalizes_with ISO (PMID:21148287)
(PMID:11382755)
UniProtKB PMID:11382755, PMID:21148287 NCBI chr11:113,905,989...113,920,163
Ensembl chr11:117,835,557...117,849,389
JBrowse link
G VPS16 VPS16 core subunit of CORVET and HOPS complexes ISO (PMID:11382755), (PMID:19109425) UniProtKB PMID:11382755, PMID:19109425 NCBI chr20:2,931,553...2,956,604
Ensembl chr20:2,695,335...2,720,030
JBrowse link
G VPS18 VPS18 core subunit of CORVET and HOPS complexes ISO (PMID:11382755) UniProtKB PMID:11382755 NCBI chr15:19,836,707...19,846,231
Ensembl chr15:38,086,518...38,095,835
JBrowse link
G VPS26B VPS26, retromer complex component B ISO (MGI:MGI:5607223|PMID:21920005) UniProtKB PMID:21920005 MGI:MGI:5607223 NCBI chr11:129,077,964...129,100,936
Ensembl chr11:132,936,077...132,958,364
JBrowse link
G VPS33A VPS33A core subunit of CORVET and HOPS complexes ISO (PMID:19109425) UniProtKB PMID:19109425 NCBI chr12:119,831,693...119,868,132 JBrowse link
G VPS33B VPS33B late endosome and lysosome associated ISO (PMID:15052268) UniProtKB PMID:15052268 NCBI chr15:69,691,717...69,715,617 JBrowse link
G VPS36 vacuolar protein sorting 36 homolog ISO (MGI:MGI:3582124|PMID:15755741) MGI PMID:15755741 MGI:MGI:3582124 NCBI chr13:33,398,165...33,436,615
Ensembl chr13:52,336,484...52,372,851
JBrowse link
G VPS41 VPS41 subunit of HOPS complex ISO (MGI:MGI:3042340|PMID:14668490) MGI PMID:14668490 MGI:MGI:3042340 NCBI chr 7:39,355,578...39,543,281
Ensembl chr 7:39,590,587...39,776,937
JBrowse link
G VPS4A vacuolar protein sorting 4 homolog A ISO (PMID:10637304), (PMID:15075231) UniProtKB PMID:10637304, PMID:15075231 NCBI chr16:49,685,827...49,699,542 JBrowse link
G ZC3HAV1 zinc finger CCCH-type containing, antiviral 1 ISO (MGI:MGI:5499037|PMID:23776219) MGI PMID:23776219 MGI:MGI:5499037 NCBI chr 7:131,002,580...131,068,513
Ensembl chr 7:143,489,750...143,555,438
JBrowse link
cytoplasmic side of late endosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDIP1 cell death inducing p53 target 1 ISO (PMID:27582497) UniProtKB PMID:27582497 NCBI chr16:3,437,414...3,464,989
Ensembl chr16:4,604,954...4,632,724
JBrowse link
G LITAF lipopolysaccharide induced TNF factor ISO (PMID:27582497) UniProtKB PMID:27582497 NCBI chr16:10,488,738...10,527,843
Ensembl chr16:11,714,325...11,750,521
JBrowse link
late endosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABHD6 abhydrolase domain containing 6, acylglycerol lipase ISO (MGI:MGI:5700445|PMID:26491015) UniProt PMID:26491015 MGI:MGI:5700445 NCBI chr 3:58,172,334...58,227,531
Ensembl chr 3:59,586,573...59,641,824
JBrowse link
G ANXA2 annexin A2 ISO (PMID:23360953) UniProtKB PMID:23360953 NCBI chr15:39,322,303...39,371,565
Ensembl chr15:57,625,425...57,674,250
JBrowse link
G ANXA6 annexin A6 ISO (PMID:23360953) UniProtKB PMID:23360953 NCBI chr 5:146,528,446...146,585,186
Ensembl chr 5:152,530,445...152,652,231
JBrowse link
G BAIAP3 BAI1 associated protein 3 ISO (PMID:28626000) UniProtKB PMID:28626000 Ensembl chr16:1,390,160...1,403,978 JBrowse link
G CD63 CD63 molecule ISO (PMID:23632027) UniProtKB PMID:23632027 NCBI chr12:33,181,896...33,186,123
Ensembl chr12:33,906,314...33,910,595
JBrowse link
G CLCN3 chloride voltage-gated channel 3 ISO (MGI:MGI:6414705|PMID:16222710) UniProt PMID:16222710 MGI:MGI:6414705 NCBI chr 4:161,838,061...161,943,072
Ensembl chr 4:173,925,474...174,011,681
JBrowse link
G LAMP2 lysosomal associated membrane protein 2 ISO (PMID:21896273)
(MGI:MGI:5291841|PMID:21896273)
MGI PMID:21896273 MGI:MGI:5291841 NCBI chr  X:109,700,185...109,743,579
Ensembl chr  X:119,886,982...119,929,896
JBrowse link
G LAMTOR1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 ISO PMID:19177150 UniProt PMID:19177150 RGD:8553879 NCBI chr11:67,177,580...67,183,631
Ensembl chr11:70,390,141...70,407,246
JBrowse link
G LAPTM4A lysosomal protein transmembrane 4 alpha ISO (PMID:22096579) UniProtKB PMID:22096579 NCBI chr2A:20,019,774...20,038,289
Ensembl chr2A:20,135,960...20,154,667
JBrowse link
G LAPTM4B lysosomal protein transmembrane 4 beta ISO (PMID:21224396), (PMID:22096579), (PMID:25588945) UniProtKB PMID:21224396, PMID:22096579, PMID:25588945 NCBI chr 8:94,414,275...94,491,483 JBrowse link
G LOC100972084 major histocompatibility complex class I-related gene protein ISO (PMID:27043408) UniProt PMID:27043408 NCBI chr 1:156,510,588...156,538,447
Ensembl chr 1:160,178,106...160,198,420
JBrowse link
G LOC100974743 cytochrome b ascorbate-dependent protein 3 ISO (MGI:MGI:3695337|PMID:16996694) UniProtKB PMID:16996694 MGI:MGI:3695337 NCBI chr11:56,648,322...56,661,758
Ensembl chr11:60,013,043...60,026,207
JBrowse link
G LOC100987081 HLA class II histocompatibility antigen, DR alpha chain ISO (PMID:18305173), (PMID:19117940) UniProtKB PMID:18305173, PMID:19117940 NCBI chr 6:32,105,421...32,110,579
Ensembl chr 6:32,982,228...32,987,417
JBrowse link
G MARCHF1 membrane associated ring-CH-type finger 1 ISO (MGI:MGI:4430128|PMID:19880452)
(PMID:19117940)
UniProtKB PMID:19117940, PMID:19880452 MGI:MGI:4430128 NCBI chr 4:155,791,599...156,639,456 JBrowse link
G MREG melanoregulin ISO (MGI:MGI:6244097|PMID:30174147) UniProt PMID:30174147 MGI:MGI:6244097 NCBI chr2B:103,204,959...103,296,122
Ensembl chr2B:221,809,123...221,877,814
JBrowse link
G PIP4P1 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1 ISO (PMID:16365287)
(MGI:MGI:6144310|PMID:29378918)
FlyBase
UniProt
PMID:16365287, PMID:29378918 MGI:MGI:6144310 NCBI chr14:1,332,403...1,336,157
Ensembl chr14:19,384,634...19,388,140
JBrowse link
G PIP4P2 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 ISO (PMID:16365287)
(MGI:MGI:6144310|PMID:29378918)
FlyBase
UniProt
PMID:16365287, PMID:29378918 MGI:MGI:6144310 NCBI chr 8:87,657,202...87,704,355
Ensembl chr 8:89,611,726...89,639,419
JBrowse link
G PLD3 phospholipase D family member 3 ISO (MGI:MGI:6115966|PMID:28128235)
(PMID:29386126)
UniProt PMID:28128235, PMID:29386126 MGI:MGI:6115966 NCBI chr19:37,396,475...37,426,425
Ensembl chr19:45,910,035...45,939,343
JBrowse link
G RAB7A RAB7A, member RAS oncogene family ISO (MGI:MGI:5689086|PMID:23708524) GO_Central PMID:23708524 MGI:MGI:5689086 NCBI chr 3:125,784,604...125,873,051 JBrowse link
G RMC1 regulator of MON1-CCZ1 ISO (PMID:29038162) UniProtKB PMID:29038162 NCBI chr18:16,754,469...16,783,381
Ensembl chr18:20,380,579...20,409,314
JBrowse link
G RNF13 ring finger protein 13 ISO (MGI:MGI:3844769|PMID:19292867) UniProtKB PMID:19292867 MGI:MGI:3844769 NCBI chr 3:146,828,951...146,983,613
Ensembl chr 3:154,408,822...154,563,298
JBrowse link
G SLC11A2 solute carrier family 11 member 2 ISO (PMID:10751401) BHF-UCL
RGD
PMID:10751401, PMID:16449358 RGD:1580424 NCBI chr12:37,726,158...37,774,554
Ensembl chr12:38,629,686...38,677,377
JBrowse link
G SLC39A14 solute carrier family 39 member 14 ISO (PMID:27703010) UniProt PMID:27703010 NCBI chr 8:21,617,529...21,672,726
Ensembl chr 8:18,555,895...18,621,510
JBrowse link
G SNF8 SNF8 subunit of ESCRT-II ISO (PMID:17010938) UniProtKB PMID:17010938 NCBI chr17:8,595,647...8,609,730
Ensembl chr17:8,578,050...8,794,480
JBrowse link
G SPAAR small regulatory polypeptide of amino acid response ISO (PMID:28024296) UniProtKB PMID:28024296 NCBI chr 9:35,760,064...35,762,224
Ensembl chr 9:36,563,148...36,563,420
JBrowse link
G SPPL2A signal peptide peptidase like 2A ISO (MGI:MGI:5291841|PMID:21896273) MGI PMID:21896273 MGI:MGI:5291841 NCBI chr15:29,660,190...29,718,477
Ensembl chr15:47,997,304...48,055,239
JBrowse link
G STARD3 StAR related lipid transfer domain containing 3 ISO (PMID:24105263), (PMID:28377464) UniProtKB PMID:24105263, PMID:28377464 NCBI chr17:17,625,390...17,651,765 JBrowse link
G STARD3NL STARD3 N-terminal like ISO (PMID:24105263) UniProtKB PMID:24105263 NCBI chr 7:38,811,588...38,864,042
Ensembl chr 7:39,032,337...39,084,789
JBrowse link
G STX7 syntaxin 7 ISO RGD PMID:15133481 RGD:4892614 NCBI chr 6:130,232,041...130,289,326
Ensembl chr 6:134,342,304...134,398,215
JBrowse link
G STX8 syntaxin 8 ISO RGD PMID:15133481 RGD:4892614 NCBI chr17:42,076,600...42,403,334
Ensembl chr17:46,816,859...47,141,816
JBrowse link
G UBXN6 UBX domain protein 6 ISO (PMID:21822278) UniProtKB PMID:21822278 NCBI chr19:3,463,259...3,475,428
Ensembl chr19:4,410,952...4,423,092
JBrowse link
G VAMP7 vesicle associated membrane protein 7 ISO PMID:10459012 RGD
UniProt
PMID:10459012, PMID:15133481 RGD:4892614, RGD:8554473 NCBI chr  X:145,362,432...145,425,097
Ensembl chr  X:155,257,185...155,320,215
JBrowse link
G VAMP8 vesicle associated membrane protein 8 ISO (PMID:23217709) UniProtKB
RGD
PMID:15133481, PMID:23217709 RGD:4892614 NCBI chr2A:85,627,678...85,632,205
Ensembl chr2A:87,180,681...87,185,195
JBrowse link
G VPS36 vacuolar protein sorting 36 homolog ISO (PMID:17010938) UniProtKB PMID:17010938 NCBI chr13:33,398,165...33,436,615
Ensembl chr13:52,336,484...52,372,851
JBrowse link
G VPS39 VPS39 subunit of HOPS complex ISO (PMID:23167963) UniProtKB PMID:23167963 NCBI chr15:21,113,047...21,162,738
Ensembl chr15:39,273,546...39,323,196
JBrowse link
G VPS41 VPS41 subunit of HOPS complex ISO (PMID:23167963) UniProtKB PMID:23167963 NCBI chr 7:39,355,578...39,543,281
Ensembl chr 7:39,590,587...39,776,937
JBrowse link
G VTI1B vesicle transport through interaction with t-SNAREs 1B ISO (PMID:18033301), (PMID:23217709) UniProtKB PMID:18033301, PMID:23217709 NCBI chr14:48,227,203...48,254,990
Ensembl chr14:67,105,160...67,134,351
JBrowse link
G WDR81 WD repeat domain 81 ISO (PMID:26783301), (PMID:27126989), (PMID:28404643) UniProtKB PMID:26783301, PMID:27126989, PMID:28404643 NCBI chr17:1,708,119...1,722,405
Ensembl chr17:1,594,162...1,616,138
JBrowse link
G WDR91 WD repeat domain 91 ISO (PMID:26783301), (PMID:28404643) UniProtKB PMID:26783301, PMID:28404643 NCBI chr 7:127,150,041...127,176,376
Ensembl chr 7:139,653,864...139,680,199
JBrowse link
Mon1-Ccz1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCZ1 CCZ1 homolog, vacuolar protein trafficking and biogenesis associated ISO (PMID:29038162) UniProtKB PMID:29038162 NCBI chr 7:6,129,292...6,150,646 JBrowse link
G CCZ1B CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated ISO (PMID:29038162) UniProtKB PMID:29038162 NCBI chr 7:6,589,572...6,617,072 JBrowse link
G MON1A MON1 homolog A, secretory trafficking associated ISO (PMID:29038162) UniProtKB PMID:29038162 NCBI chr 3:49,840,824...49,862,101
Ensembl chr 3:51,077,398...51,099,498
JBrowse link
G MON1B MON1 homolog B, secretory trafficking associated ISO (PMID:29038162) UniProtKB PMID:29038162 NCBI chr16:57,765,901...57,774,639
Ensembl chr16:77,112,238...77,120,937
JBrowse link
G RMC1 regulator of MON1-CCZ1 ISO (PMID:29038162) UniProtKB PMID:29038162 NCBI chr18:16,754,469...16,783,381
Ensembl chr18:20,380,579...20,409,314
JBrowse link
multivesicular body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACP3 acid phosphatase 3 ISO RGD PMID:977936 RGD:2299977 NCBI chr 3:129,392,396...129,465,962
Ensembl chr 3:136,713,816...136,764,655
JBrowse link
G ATP13A2 ATPase cation transporting 13A2 ISO (PMID:24603074), (PMID:25392495) ParkinsonsUK-UCL PMID:24603074, PMID:25392495 NCBI chr 1:15,929,613...15,955,631
Ensembl chr 1:16,986,385...17,006,033
Ensembl chr 1:16,986,385...17,006,033
JBrowse link
G BACE1 beta-secretase 1 ISO (PMID:24612608) UniProtKB PMID:24612608 NCBI chr11:112,120,950...112,151,505
Ensembl chr11:116,054,303...116,084,812
JBrowse link
G BST2 bone marrow stromal cell antigen 2 ISO (PMID:22072966) CACAO PMID:22072966 NCBI chr19:16,890,257...16,892,989
Ensembl chr19:17,863,991...17,866,728
JBrowse link
G CD74 CD74 molecule ISO (MGI:MGI:3033879|PMID:11854359) MGI PMID:11854359 MGI:MGI:3033879 NCBI chr 5:145,825,635...145,836,916
Ensembl chr 5:151,830,311...151,841,334
JBrowse link
G CD79A CD79a molecule ISO (MGI:MGI:3033879|PMID:11854359) MGI PMID:11854359 MGI:MGI:3033879 NCBI chr19:38,765,067...38,769,556
Ensembl chr19:47,270,377...47,274,711
JBrowse link
G CRHBP corticotropin releasing hormone binding protein ISO RGD PMID:10524337 RGD:5490549 NCBI chr 5:38,327,305...38,343,901
Ensembl chr 5:38,845,925...38,869,549
JBrowse link
G CRHR1 corticotropin releasing hormone receptor 1 ISO Purkinje cells beginning postnatal day 3 RGD PMID:12911751 RGD:1626245 NCBI chr17:11,261,435...11,313,630 JBrowse link
G CST3 cystatin C ISO RGD PMID:10950881 RGD:2306514 NCBI chr20:23,583,043...23,587,399
Ensembl chr20:23,935,942...23,940,425
JBrowse link
G CST7 cystatin F ISO (PMID:22365146) ARUK-UCL PMID:22365146 NCBI chr20:24,889,834...24,900,766
Ensembl chr20:25,237,251...25,248,364
JBrowse link
G CTSL cathepsin L ISO (PMID:22365146) ARUK-UCL PMID:22365146 NCBI chr 9:58,851,899...58,857,170
Ensembl chr 9:86,903,006...86,908,303
JBrowse link
G ECPAS Ecm29 proteasome adaptor and scaffold ISO (PMID:20682791) UniProtKB PMID:20682791 NCBI chr 9:82,499,075...82,623,007
Ensembl chr 9:110,662,590...110,786,472
JBrowse link
G GJA1 gap junction protein alpha 1 ISO RGD PMID:16162097 RGD:1582681 NCBI chr 6:119,213,513...119,227,617 JBrowse link
G LAMP1 lysosomal associated membrane protein 1 ISO (MGI:MGI:3033879|PMID:11854359) RGD
MGI
PMID:7868367, PMID:11854359 MGI:MGI:3033879, RGD:4892636 NCBI chr13:94,442,507...94,464,061
Ensembl chr13:113,507,401...113,530,457
JBrowse link
G LOC100968989 HLA class II histocompatibility antigen, DM alpha chain ISO (MGI:MGI:3033879|PMID:11854359) MGI PMID:11854359 MGI:MGI:3033879 NCBI chr 6:32,518,060...32,537,989
Ensembl chr 6:33,634,123...33,637,988
JBrowse link
G LOC100972994 HLA class II histocompatibility antigen, DQ beta 1 chain ISO (MGI:MGI:3033879|PMID:11854359) MGI PMID:11854359 MGI:MGI:3033879 NCBI chr 6:32,237,395...32,244,201
Ensembl chr 6:33,353,599...33,360,272
JBrowse link
G LRAT lecithin retinol acyltransferase ISO RGD PMID:18544127 RGD:6893660 NCBI chr 4:147,110,568...147,119,706
Ensembl chr 4:158,928,607...158,937,747
JBrowse link
G MHC-DMB HLA class II histocompatibility antigen, DM beta chain ISO (MGI:MGI:3033879|PMID:11854359) MGI PMID:11854359 MGI:MGI:3033879 NCBI chr 6:32,504,074...32,510,669
Ensembl chr 6:33,619,870...33,625,685
JBrowse link
G PRKAR1A protein kinase cAMP-dependent type I regulatory subunit alpha ISO (MGI:MGI:5293291|PMID:21502359) MGI PMID:21502359 MGI:MGI:5293291 NCBI chr17:62,448,718...62,488,493
Ensembl chr17:67,838,484...67,877,943
JBrowse link
G PRKAR1B protein kinase cAMP-dependent type I regulatory subunit beta ISO (MGI:MGI:5293291|PMID:21502359) MGI PMID:21502359 MGI:MGI:5293291 NCBI chr 7:700,691...876,497
Ensembl chr 7:923,668...1,097,456
JBrowse link
G RAB11A RAB11A, member RAS oncogene family ISO (PMID:15634213) UniProtKB PMID:15634213 NCBI chr15:44,810,880...44,833,438
Ensembl chr15:63,088,084...63,108,077
JBrowse link
G SFTPA1 surfactant protein A1 ISO RGD PMID:16187065 RGD:4143471 NCBI chr10:76,571,312...76,575,820 JBrowse link
G SFTPB surfactant protein B ISO RGD PMID:16187065 RGD:4143471 NCBI chr2A:85,708,485...85,718,120
Ensembl chr2A:87,257,244...87,268,332
JBrowse link
G SFTPC surfactant protein C ISO RGD PMID:16187065 RGD:4143471 NCBI chr 8:21,402,060...21,409,438
Ensembl chr 8:18,345,940...18,348,764
JBrowse link
G SFTPD surfactant protein D ISO RGD PMID:16187065 RGD:4143471 NCBI chr10:76,275,147...76,318,952
Ensembl chr10:78,965,252...78,974,181
JBrowse link
G SLC17A8 solute carrier family 17 member 8 ISO RGD PMID:12388773 RGD:625707 NCBI chr12:97,935,177...98,001,240
Ensembl chr12:101,342,113...101,405,844
JBrowse link
G SLC2A4 solute carrier family 2 member 4 ISO RGD PMID:1881917 RGD:2306204 NCBI chr17:7,312,605...7,319,430
Ensembl chr17:7,299,966...7,306,344
JBrowse link
G SORL1 sortilin related receptor 1 ISO (PMID:21385844) RGD
UniProt
PMID:16452683, PMID:21385844 RGD:1581100 NCBI chr11:116,297,014...116,477,399
Ensembl chr11:120,222,491...120,402,432
JBrowse link
G STEAP3 STEAP3 metalloreductase ISO (PMID:15319436) MGI PMID:15319436 NCBI chr2B:6,166,296...6,208,338
Ensembl chr2B:119,752,363...119,787,051
JBrowse link
G TPT1 tumor protein, translationally-controlled 1 ISO (PMID:15319436) MGI PMID:15319436 NCBI chr13:26,504,747...26,509,160
Ensembl chr 3:197,562,788...197,567,290
JBrowse link
G ZP2 zona pellucida glycoprotein 2 ISO (MGI:MGI:3690518|PMID:17047254) UniProtKB PMID:17047254 MGI:MGI:3690518 NCBI chr16:17,193,632...17,210,667
Ensembl chr16:21,227,285...21,244,316
JBrowse link
multivesicular body membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD63 CD63 molecule ISO (PMID:26280656) UniProtKB PMID:26280656 NCBI chr12:33,181,896...33,186,123
Ensembl chr12:33,906,314...33,910,595
JBrowse link
G LAPTM4B lysosomal protein transmembrane 4 beta ISO (PMID:25588945), (PMID:26280656) UniProtKB PMID:25588945, PMID:26280656 NCBI chr 8:94,414,275...94,491,483 JBrowse link
G PMEL premelanosome protein ISO (PMID:11694580) UniProtKB PMID:11694580 NCBI chr12:32,946,951...32,958,205
Ensembl chr12:33,196,040...33,207,610
JBrowse link
G RAB27A RAB27A, member RAS oncogene family ISO (PMID:19966785) UniProtKB PMID:19966785 NCBI chr15:34,174,491...34,263,045
Ensembl chr15:52,498,202...52,529,984
JBrowse link
G RAB27B RAB27B, member RAS oncogene family ISO (PMID:19966785) UniProtKB PMID:19966785 NCBI chr18:48,099,912...48,274,416
Ensembl chr18:51,542,842...51,604,061
JBrowse link
G TMEM9 transmembrane protein 9 ISO (PMID:30374053) UniProt PMID:30374053 NCBI chr 1:176,734,640...176,771,476
Ensembl chr 1:181,037,050...181,056,841
JBrowse link
multivesicular body, internal vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD63 CD63 molecule ISO (PMID:21962903), (PMID:26280656) UniProtKB PMID:21962903, PMID:26280656 NCBI chr12:33,181,896...33,186,123
Ensembl chr12:33,906,314...33,910,595
JBrowse link
G LAPTM4B lysosomal protein transmembrane 4 beta ISO (PMID:26280656) UniProtKB PMID:26280656 NCBI chr 8:94,414,275...94,491,483 JBrowse link
G LRRK2 leucine rich repeat kinase 2 ISO (PMID:19640926) ParkinsonsUK-UCL PMID:19640926 NCBI chr12:48,343,621...48,488,337
Ensembl chr12:49,205,930...49,350,462
JBrowse link
multivesicular body, internal vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EGFR epidermal growth factor receptor ISO (PMID:17714434) UniProtKB PMID:17714434 NCBI chr 7:55,614,042...55,807,285
Ensembl chr 7:56,046,296...56,111,615
JBrowse link
Ragulator complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMTOR1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 ISO (PMID:20381137) UniProtKB PMID:20381137 NCBI chr11:67,177,580...67,183,631
Ensembl chr11:70,390,141...70,407,246
JBrowse link
G LAMTOR2 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 ISO (PMID:20381137) UniProtKB PMID:20381137 NCBI chr 1:131,396,937...131,400,695
Ensembl chr 1:135,226,400...135,230,167
JBrowse link
G LAMTOR3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 ISO (PMID:20381137) UniProtKB PMID:20381137 NCBI chr 4:92,304,115...92,317,461
Ensembl chr 4:102,965,111...102,978,205
JBrowse link
G LAMTOR4 late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 ISO (PMID:22980980) UniProtKB PMID:22980980 NCBI chr 7:92,183,617...92,188,967 JBrowse link
G LAMTOR5 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 ISO (PMID:22980980) UniProtKB PMID:22980980 NCBI chr 1:113,050,671...113,057,368
Ensembl chr 1:127,285,553...127,292,233
JBrowse link
G SLC38A9 solute carrier family 38 member 9 colocalizes_with ISO (PMID:25561175), (PMID:25567906) UniProtKB PMID:25561175, PMID:25567906 NCBI chr 5:58,312,101...58,397,365
Ensembl chr 5:59,944,034...60,020,769
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 12666
    cellular anatomical entity 12562
      endomembrane system 3064
        endosome 678
          late endosome 194
            Mon1-Ccz1 complex 5
            late endosome lumen + 0
            late endosome membrane + 50
            multivesicular body + 39
Path 2
Term Annotations click to browse term
  cellular_component 12666
    cellular anatomical entity 12562
      organelle 9741
        membrane-bounded organelle 8648
          vesicle 1591
            intracellular vesicle 1458
              cytoplasmic vesicle 1453
                endosome 678
                  late endosome 194
                    Mon1-Ccz1 complex 5
                    late endosome lumen + 0
                    late endosome membrane + 50
                    multivesicular body + 39
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.