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ONTOLOGY REPORT - ANNOTATIONS


Term:late endosome
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Accession:GO:0005770 term browser browse the term
Definition:A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center.
Synonyms:exact_synonym: prevacuolar compartment
 broad_synonym: PVC
 xref: NIF_Subcellular:nlx_subcell_20090702


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late endosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07037545.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:23,416,395...23,417,122 JBrowse link
G Abca5 ATP binding cassette subfamily A member 5 ISO
IBA
IEA
(MGI:MGI:3581349|PMID:15870284)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:15870284, PMID:21873635 GO_REF:0000107, MGI:MGI:3581349, RGD:13792537 NCBI chr10:98,573,226...98,645,028
Ensembl chr10:98,576,039...98,644,938
JBrowse link
G Ankrd13a ankyrin repeat domain 13a ISO (PMID:22298428) RGD PMID:22298428 NCBI chr12:47,558,587...47,588,486
Ensembl chr12:47,558,590...47,588,335
JBrowse link
G Ankrd13b ankyrin repeat domain 13B ISO (PMID:22298428) RGD PMID:22298428 NCBI chr10:62,674,416...62,691,949
Ensembl chr10:62,674,561...62,690,845
JBrowse link
G Ankrd13d ankyrin repeat domain 13D IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:219,520,316...219,532,718
Ensembl chr 1:219,520,075...219,532,609
JBrowse link
G Ankrd27 ankyrin repeat domain 27 ISO
IBA
(PMID:24856514)
PMID:21873635
RGD PMID:24856514, PMID:21873635 RGD:13792537 NCBI chr 1:91,857,048...91,958,763
Ensembl chr 1:91,857,057...91,958,763
JBrowse link
G Ap5m1 adaptor related protein complex 5 subunit mu 1 ISO
IBA
ISS
(PMID:22022230)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:22022230, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr15:25,933,483...25,955,745
Ensembl chr15:25,933,483...25,955,745
JBrowse link
G Ap5s1 adaptor related protein complex 5 subunit sigma 1 ISO
IBA
(PMID:22022230)
PMID:21873635
RGD PMID:22022230, PMID:21873635 RGD:13792537 NCBI chr 3:123,754,035...123,757,349
Ensembl chr 3:123,754,057...123,757,359
JBrowse link
G Apoa5 apolipoprotein A5 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:50,559,079...50,561,720
Ensembl chr 8:50,559,126...50,561,736
JBrowse link
G Apoe apolipoprotein E IDA RGD PMID:7806565 RGD:1626382 NCBI chr 1:80,612,894...80,616,820
Ensembl chr 1:80,612,895...80,617,057
JBrowse link
G Arf1 ADP-ribosylation factor 1 IDA RGD PMID:21421027 RGD:9684860 NCBI chr10:45,562,700...45,579,214
Ensembl chr10:45,563,547...45,579,029
JBrowse link
G Atg9a autophagy related 9A IDA
ISO
(PMID:22456507) RGD PMID:22456507, PMID:16940348 RGD:4889884 NCBI chr 9:82,382,800...82,393,429
Ensembl chr 9:82,382,800...82,393,382
JBrowse link
G Atp13a2 ATPase cation transporting 13A2 ISO (PMID:25392495) RGD PMID:25392495 NCBI chr 5:159,512,208...159,531,631
Ensembl chr 5:159,512,285...159,531,637
JBrowse link
G Atp7a ATPase copper transporting alpha IDA
ISO
(PMID:8943055) RGD PMID:8943055, PMID:16741141 RGD:1599391 NCBI chr  X:77,076,085...77,193,644
Ensembl chr  X:77,076,106...77,193,644
JBrowse link
G Atp7b ATPase copper transporting beta IDA
ISO
IEA
(PMID:15681833)
GO_REF:0000107
RGD
Ensembl
PMID:15681833, PMID:16741141 GO_REF:0000107, RGD:1599391 NCBI chr16:74,865,516...74,944,935
Ensembl chr16:74,865,516...74,945,286
JBrowse link
G Bace1 beta-secretase 1 ISS
ISO
GO_REF:0000024
(PMID:16033761), (PMID:23109336), (PMID:24612608), (PMID:27084579), (PMID:27302062)
UniProt
RGD
PMID:16033761, PMID:23109336, PMID:24612608, PMID:27084579, PMID:27302062 GO_REF:0000024 NCBI chr 8:50,140,092...50,162,388
Ensembl chr 8:50,139,997...50,162,361
JBrowse link
G Cd1d1 CD1d1 molecule ISO (MGI:MGI:3041278|PMID:11754812) RGD PMID:11754812 MGI:MGI:3041278 NCBI chr 2:186,330,298...186,333,805
Ensembl chr 2:186,330,298...186,333,805
JBrowse link
G Cd63 Cd63 molecule ISO (MGI:MGI:3042340|PMID:14668490), (MGI:MGI:5804716|PMID:27435297) RGD PMID:14668490, PMID:27435297 MGI:MGI:3042340, MGI:MGI:5804716 NCBI chr 7:3,320,250...3,335,583
Ensembl chr 7:3,320,103...3,335,582
JBrowse link
G Cd74 CD74 molecule ISS
ISO
GO_REF:0000024
(MGI:MGI:3054306|PMID:15294975), (MGI:MGI:3691984|PMID:11483509)
UniProt
RGD
PMID:11483509, PMID:15294975 GO_REF:0000024, MGI:MGI:3054306, MGI:MGI:3691984 NCBI chr18:56,071,420...56,080,851
Ensembl chr18:56,071,478...56,080,849
JBrowse link
G Chid1 chitinase domain containing 1 ISO (PMID:16357325) RGD PMID:16357325 NCBI chr 1:214,476,418...214,511,569
Ensembl chr 1:214,476,387...214,511,529
JBrowse link
G Chmp2b charged multivesicular body protein 2B colocalizes_with ISO (PMID:16041373) RGD PMID:16041373 NCBI chr11:2,666,405...2,692,213
Ensembl chr11:2,665,285...2,692,198
JBrowse link
G Chmp3 charged multivesicular body protein 3 IDA
ISO
(PMID:16554368) RGD PMID:16554368, PMID:18076377 RGD:4892661 NCBI chr 4:99,449,213...99,496,156
Ensembl chr 4:99,449,111...99,494,423
JBrowse link
G Clcn3 chloride voltage-gated channel 3 ISO
ISS
(PMID:12471024)
GO_REF:0000024
RGD
UniProt
PMID:12471024 GO_REF:0000024 NCBI chr16:32,448,821...32,520,649
Ensembl chr16:32,449,116...32,519,148
JBrowse link
G Clec16a C-type lectin domain containing 16A colocalizes_with IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:5,002,196...5,196,914
Ensembl chr10:5,009,826...5,196,892
JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin ISO (MGI:MGI:3527911|PMID:15588329)
(PMID:10332042), (PMID:15471887), (PMID:22261744), (PMID:23840424)
RGD PMID:10332042, PMID:15471887, PMID:15588329, PMID:22261744, PMID:23840424 MGI:MGI:3527911 NCBI chr 1:197,986,384...197,999,726
Ensembl chr 1:197,986,385...197,997,664
JBrowse link
G Cst7 cystatin F ISO
IBA
(MGI:MGI:6294233|PMID:15212960)
PMID:21873635
RGD PMID:15212960, PMID:21873635 MGI:MGI:6294233, RGD:13792537 NCBI chr 3:146,363,913...146,373,365
Ensembl chr 3:146,365,092...146,373,365
JBrowse link
G Ctns cystinosin, lysosomal cystine transporter ISO (PMID:15128704) RGD PMID:15128704 NCBI chr10:59,749,250...59,772,475
Ensembl chr10:59,749,256...59,764,868
JBrowse link
G Ctss cathepsin S ISO
IEA
(PMID:22365146)
GO_REF:0000107
RGD
Ensembl
PMID:22365146 GO_REF:0000107 NCBI chr 2:197,655,780...197,679,768
Ensembl chr 2:197,655,786...197,679,458
JBrowse link
G Cxcr4 C-X-C motif chemokine receptor 4 ISO
IEA
ISS
(PMID:21540189)
GO_REF:0000044
GO_REF:0000024
RGD
UniProt
PMID:21540189 GO_REF:0000024, GO_REF:0000044 NCBI chr13:45,314,952...45,318,856
Ensembl chr13:45,314,933...45,318,878
JBrowse link
G Ddit3 DNA-damage inducible transcript 3 ISO
IEA
(MGI:MGI:5466421|PMID:23028046)
GO_REF:0000107
RGD
Ensembl
PMID:23028046 GO_REF:0000107, MGI:MGI:5466421 NCBI chr 7:70,578,564...70,585,074
Ensembl chr 7:70,580,198...70,585,084
JBrowse link
G Dennd10 DENN domain containing 10 ISO (PMID:30771381) RGD PMID:30771381 NCBI chr 1:282,188,080...282,211,588
Ensembl chr 1:282,188,110...282,210,580
JBrowse link
G Derl1 derlin 1 ISO (MGI:MGI:4361100|PMID:19509052) RGD PMID:19509052 MGI:MGI:4361100 NCBI chr 7:97,737,176...97,759,852
Ensembl chr 7:97,737,178...97,759,852
JBrowse link
G Derl2 derlin 2 ISO (MGI:MGI:4361100|PMID:19509052) RGD PMID:19509052 MGI:MGI:4361100 NCBI chr10:57,641,682...57,653,554
Ensembl chr10:57,644,207...57,653,359
JBrowse link
G Dync1li1 dynein cytoplasmic 1 light intermediate chain 1 colocalizes_with IDA RGD PMID:21169557 RGD:13207422 NCBI chr 8:122,743,274...122,776,801
Ensembl chr 8:122,743,189...122,776,806
JBrowse link
G Dync1li2 dynein, cytoplasmic 1 light intermediate chain 2 colocalizes_with IDA RGD PMID:21169557 RGD:13207422 NCBI chr19:740,007...762,897
Ensembl chr19:740,028...762,897
JBrowse link
G Dysf dysferlin ISO (PMID:20595382) RGD PMID:20595382 NCBI chr 4:115,700,942...115,901,873
Ensembl chr 4:115,712,850...115,901,873
JBrowse link
G Ecpas Ecm29 proteasome adaptor and scaffold ISO (PMID:15496406) RGD PMID:15496406 NCBI chr 5:75,928,510...76,040,771
Ensembl chr 5:75,931,293...76,039,760
JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 colocalizes_with ISO
IEA
(PMID:21072319)
GO_REF:0000107
RGD
Ensembl
PMID:21072319 GO_REF:0000107 NCBI chr 2:211,243,398...211,323,283
Ensembl chr 2:211,246,068...211,322,719
JBrowse link
G Exoc8 exocyst complex component 8 ISO (PMID:24344185) RGD PMID:24344185 NCBI chr19:57,647,305...57,649,794
Ensembl chr19:57,647,291...57,649,827
JBrowse link
G F2r coagulation factor II (thrombin) receptor ISO
IEA
(PMID:24732013)
GO_REF:0000107
RGD
Ensembl
PMID:24732013 GO_REF:0000107 NCBI chr 2:26,118,760...26,135,340
Ensembl chr 2:26,118,760...26,135,340
JBrowse link
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 ISO
IBA
(PMID:20100911)
PMID:21873635
RGD PMID:20100911, PMID:21873635 RGD:13792537 NCBI chr 8:132,844,042...132,910,905
Ensembl chr 8:132,844,043...132,911,193
JBrowse link
G Gja1 gap junction protein, alpha 1 IDA RGD PMID:16162097 RGD:1582681 NCBI chr20:37,876,650...37,889,097
Ensembl chr20:37,876,650...37,889,089
JBrowse link
G Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 ISO (MGI:MGI:1355569|PMID:10777580) RGD PMID:10777580 MGI:MGI:1355569 NCBI chr15:19,721,292...19,734,032
Ensembl chr15:19,721,293...19,733,967
JBrowse link
G Grin2b glutamate ionotropic receptor NMDA type subunit 2B ISS
ISO
GO_REF:0000024
(MGI:MGI:6370252|PMID:31424425)
UniProt
RGD
PMID:31424425 GO_REF:0000024, MGI:MGI:6370252 NCBI chr 4:169,541,620...170,000,216
Ensembl chr 4:169,560,387...169,999,873
JBrowse link
G Grn granulin precursor ISS
ISO
IEA
GO_REF:0000024
(PMID:26370502)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:26370502 GO_REF:0000024, GO_REF:0000107 NCBI chr10:90,377,103...90,383,207
Ensembl chr10:90,376,933...90,383,205
JBrowse link
G Hap1 huntingtin-associated protein 1 TAS RGD PMID:12021262 RGD:625566 NCBI chr10:88,257,975...88,266,210
Ensembl chr10:88,257,976...88,266,210
JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 ISO (MGI:MGI:5700294|PMID:21238931) RGD PMID:21238931 MGI:MGI:5700294 NCBI chr 8:44,989,401...44,993,261
Ensembl chr 8:44,990,014...44,993,179
JBrowse link
G Htt huntingtin IEA
ISO
GO_REF:0000107
(PMID:17704510)
Ensembl
RGD
PMID:17704510 GO_REF:0000107 NCBI chr14:81,105,139...81,254,637
Ensembl chr14:81,105,139...81,254,637
JBrowse link
G Igf2r insulin-like growth factor 2 receptor IDA
IBA
ISO
PMID:21873635
(PMID:22456507)
RGD PMID:22456507, PMID:19337031, PMID:21873635 RGD:4892338, RGD:13792537 NCBI chr 1:48,176,095...48,264,482
Ensembl chr 1:48,176,106...48,264,477
JBrowse link
G Insr insulin receptor IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:1,682,527...1,816,414
Ensembl chr12:1,680,957...1,816,414
JBrowse link
G Irgm immunity-related GTPase M ISO (MGI:MGI:3656111|PMID:16888103), (MGI:MGI:4430426|PMID:20072621) RGD PMID:16888103, PMID:20072621 MGI:MGI:3656111, MGI:MGI:4430426 NCBI chr10:34,213,885...34,221,968
Ensembl chr10:34,213,936...34,221,928
JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 ISO
IEA
(PMID:21957902)
GO_REF:0000107
RGD
Ensembl
PMID:21957902 GO_REF:0000107 NCBI chr 1:216,293,087...216,630,339
Ensembl chr 1:216,293,087...216,630,339
JBrowse link
G Kidins220 kinase D-interacting substrate 220 IDA PMID:17724123 UniProt PMID:17724123 RGD:8554481 NCBI chr 6:44,225,142...44,322,938
Ensembl chr 6:44,225,233...44,322,938
JBrowse link
G Lamp1 lysosomal-associated membrane protein 1 ISO (PMID:15052268), (PMID:15292400), (PMID:15792797), (PMID:16542649), (PMID:18388320), (PMID:18767904)
(MGI:MGI:2449836|PMID:12446704), (MGI:MGI:3042340|PMID:14668490), (MGI:MGI:3054306|PMID:15294975), (MGI:MGI:3615690|PMID:16415873), (MGI:MGI:3758128|PMID:17620357), (MGI:MGI:3790551|PMID:18477453), (MGI:MGI:5609900|PMID:24841562)
RGD PMID:12446704, PMID:14668490, PMID:15052268, PMID:15292400, PMID:15294975, PMID:15792797, PMID:16415873, PMID:16542649, PMID:17620357, PMID:18388320, PMID:18477453, PMID:18767904, PMID:24841562 MGI:MGI:2449836, MGI:MGI:3042340, MGI:MGI:3054306, MGI:MGI:3615690, MGI:MGI:3758128, MGI:MGI:3790551, MGI:MGI:5609900 NCBI chr16:81,689,576...81,714,341
Ensembl chr16:81,689,335...81,714,419
JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 ISO (PMID:15229288)
(MGI:MGI:3042340|PMID:14668490)
RGD PMID:14668490, PMID:15229288 MGI:MGI:3042340 NCBI chr  X:124,722,628...124,766,079
Ensembl chr  X:124,722,628...124,766,044
JBrowse link
G Lamp5 lysosomal-associated membrane protein family, member 5 ISO (MGI:MGI:5751042|PMID:25592972) RGD PMID:25592972 MGI:MGI:5751042 NCBI chr 3:129,012,677...129,031,522
Ensembl chr 3:129,018,592...129,031,521
JBrowse link
G Lamtor2 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 ISO (MGI:MGI:3693387|PMID:15263099), (MGI:MGI:4887551|PMID:19177150), (MGI:MGI:5609900|PMID:24841562) RGD PMID:15263099, PMID:19177150, PMID:24841562 MGI:MGI:3693387, MGI:MGI:4887551, MGI:MGI:5609900 NCBI chr 2:187,911,530...187,914,930
Ensembl chr 2:187,911,533...187,915,596
JBrowse link
G Lamtor3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 ISO (MGI:MGI:3693387|PMID:15263099), (MGI:MGI:4887551|PMID:19177150), (MGI:MGI:5609900|PMID:24841562) RGD PMID:15263099, PMID:19177150, PMID:24841562 MGI:MGI:3693387, MGI:MGI:4887551, MGI:MGI:5609900 NCBI chr 2:243,160,821...243,173,057
Ensembl chr 2:243,160,917...243,173,048
JBrowse link
G Ldlr low density lipoprotein receptor IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:17461796)
(MGI:MGI:3619161|PMID:11092755)
Ensembl
UniProt
RGD
PMID:11092755, PMID:17461796 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3619161 NCBI chr 8:22,750,425...22,773,305
Ensembl chr 8:22,750,336...22,774,903
JBrowse link
G Lgmn legumain ISO
IEA
(MGI:MGI:2673081|PMID:12775715)
GO_REF:0000107
RGD
Ensembl
PMID:12775715 GO_REF:0000107, MGI:MGI:2673081 NCBI chr 6:126,282,246...126,308,207
Ensembl chr 6:126,282,233...126,320,726
JBrowse link
G Lipc lipase C, hepatic type IDA RGD PMID:14701798 RGD:1625029 NCBI chr 8:77,272,582...77,398,485
Ensembl chr 8:77,272,570...77,398,248
JBrowse link
G LOC100909593 class II histocompatibility antigen, M alpha chain-like ISO (MGI:MGI:3033762|PMID:7985028), (MGI:MGI:3033877|PMID:7584146) RGD PMID:7584146, PMID:7985028 MGI:MGI:3033762, MGI:MGI:3033877 NCBI chr20:3,935,501...3,938,915 JBrowse link
G M6pr mannose-6-phosphate receptor, cation dependent ISO (MGI:MGI:2388930|PMID:12388596) RGD PMID:12388596 MGI:MGI:2388930 NCBI chr 4:155,084,755...155,093,896
Ensembl chr 4:155,088,317...155,092,827
JBrowse link
G Magi2 membrane associated guanylate kinase, WW and PDZ domain containing 2 IDA PMID:17724123 UniProt PMID:17724123 RGD:8554481 NCBI chr 4:10,995,241...12,472,423
Ensembl chr 4:10,995,234...11,610,518
JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha IDA RGD PMID:19337031 RGD:4892338 NCBI chr 3:150,801,289...150,802,935
Ensembl chr 3:150,801,289...150,802,935
JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 TAS PMID:19565474 UniProt PMID:19565474 RGD:8553538 NCBI chr 8:69,134,218...69,722,573
Ensembl chr 8:69,134,223...69,164,758
JBrowse link
G Map2k2 mitogen activated protein kinase kinase 2 TAS PMID:19565474 UniProt PMID:19565474 RGD:8553538 NCBI chr 7:11,458,971...11,478,520
Ensembl chr 7:11,458,967...11,478,489
JBrowse link
G Mapk1 mitogen activated protein kinase 1 TAS PMID:19565474 UniProt PMID:19565474 RGD:8553538 NCBI chr11:88,203,863...88,273,301
Ensembl chr11:88,211,599...88,273,254
JBrowse link
G Mapk3 mitogen activated protein kinase 3 TAS PMID:19565474 UniProt PMID:19565474 RGD:8553538 NCBI chr 1:198,192,773...198,198,975
Ensembl chr 1:198,192,773...198,198,975
JBrowse link
G Mcoln1 mucolipin 1 ISO (PMID:21224396) RGD PMID:21224396 NCBI chr12:2,054,629...2,068,682
Ensembl chr12:2,054,680...2,068,682
JBrowse link
G Mfsd12 major facilitator superfamily domain containing 12 ISO (PMID:29025994) RGD PMID:29025994 NCBI chr 7:11,214,832...11,223,713
Ensembl chr 7:11,216,975...11,223,649
JBrowse link
G Micall1 MICAL-like 1 ISO
ISS
(PMID:21795389)
GO_REF:0000024
RGD
UniProt
PMID:21795389 GO_REF:0000024 NCBI chr 7:120,343,900...120,375,151
Ensembl chr 7:120,345,180...120,375,156
JBrowse link
G Mtm1 myotubularin 1 ISO
IEA
ISS
(PMID:14722070)
GO_REF:0000044
GO_REF:0000024
RGD
UniProt
PMID:14722070 GO_REF:0000024, GO_REF:0000044 NCBI chr 6:18,821,821...18,840,449
Ensembl chr 6:18,821,815...18,839,409
JBrowse link
G Mvb12b multivesicular body subunit 12B ISO
IBA
(PMID:22232651)
PMID:21873635
RGD PMID:22232651, PMID:21873635 RGD:13792537 NCBI chr 3:12,780,196...12,944,542
Ensembl chr 3:12,780,100...12,944,494
JBrowse link
G Myo5a myosin VA colocalizes_with ISO
IEA
(PMID:24006491)
GO_REF:0000107
RGD
Ensembl
PMID:24006491 GO_REF:0000107 NCBI chr 8:82,038,966...82,156,507
Ensembl chr 8:82,037,977...82,156,617
JBrowse link
G Nbr1 NBR1, autophagy cargo receptor IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:3837054|PMID:19250911)
Ensembl
UniProt
RGD
PMID:19250911 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3837054 NCBI chr10:89,455,202...89,483,791
Ensembl chr10:89,459,650...89,484,080
JBrowse link
G Nmnat2 nicotinamide nucleotide adenylyltransferase 2 ISO
IEA
(MGI:MGI:4868574|PMID:20943658)
GO_REF:0000107
RGD
Ensembl
PMID:20943658 GO_REF:0000107, MGI:MGI:4868574 NCBI chr13:70,379,346...70,559,311
Ensembl chr13:70,379,346...70,559,458
JBrowse link
G Nsg1 neuronal vesicle trafficking associated 1 IDA
ISO
PMID:28874679
(MGI:MGI:6094363|PMID:28874679)
RGD PMID:28874679, PMID:28874679 MGI:MGI:6094363, RGD:13432228 NCBI chr14:77,380,264...77,402,007
Ensembl chr14:77,380,262...77,401,996
JBrowse link
G Nsg2 neuronal vesicle trafficking associated 2 IDA PMID:28874679 UniProt PMID:28874679 RGD:13432228 NCBI chr10:15,867,885...15,928,169
Ensembl chr10:15,867,887...15,928,169
JBrowse link
G Ntrk1 neurotrophic receptor tyrosine kinase 1 IDA
ISO
PMID:17724123
(MGI:MGI:5571523|PMID:24760869)
RGD PMID:24760869, PMID:17724123 MGI:MGI:5571523, RGD:8554481 NCBI chr 2:187,143,568...187,160,373
Ensembl chr 2:187,143,568...187,160,373
JBrowse link
G Osbpl1a oxysterol binding protein-like 1A IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:16176980)
Ensembl
UniProt
RGD
PMID:16176980 GO_REF:0000024, GO_REF:0000107 NCBI chr18:4,097,011...4,294,136
Ensembl chr18:4,097,012...4,294,136
JBrowse link
G Parm1 prostate androgen-regulated mucin-like protein 1 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:18027867)
Ensembl
UniProt
RGD
PMID:18027867, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr14:17,972,914...18,076,870
Ensembl chr14:17,969,219...18,076,907
JBrowse link
G Pcsk9 proprotein convertase subtilisin/kexin type 9 ISS
ISO
GO_REF:0000024
(PMID:17461796), (PMID:18039658)
UniProt
RGD
PMID:17461796, PMID:18039658 GO_REF:0000024 NCBI chr 5:126,031,368...126,053,726
Ensembl chr 5:126,031,368...126,053,726
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 ISO
ISS
(PMID:14617358)
GO_REF:0000024
RGD
UniProt
PMID:14617358 GO_REF:0000024 NCBI chr18:22,964,121...23,047,896
Ensembl chr18:22,964,210...23,047,895
JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 ISO
IBA
ISS
(PMID:14617358)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:14617358, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 8:114,300,248...114,350,686
Ensembl chr 8:114,300,257...114,350,681
JBrowse link
G Psap prosaposin ISS
ISO
IEA
GO_REF:0000024
(PMID:26370502)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:26370502 GO_REF:0000024, GO_REF:0000107 NCBI chr20:29,831,302...29,856,876
Ensembl chr20:29,831,314...29,856,875
JBrowse link
G Rab14 RAB14, member RAS oncogene family IDA PMID:15004230 UniProt PMID:15004230 RGD:8554557 NCBI chr 3:14,373,270...14,395,357
Ensembl chr 3:14,373,275...14,395,362
JBrowse link
G Rab27a RAB27A, member RAS oncogene family ISO
ISS
(PMID:17237785), (PMID:30771381)
GO_REF:0000024
RGD
UniProt
PMID:17237785, PMID:30771381 GO_REF:0000024 NCBI chr 8:79,722,334...79,776,228
Ensembl chr 8:79,722,334...79,776,221
JBrowse link
G Rab27b RAB27B, member RAS oncogene family ISO
ISS
(PMID:30771381)
GO_REF:0000024
RGD
UniProt
PMID:30771381 GO_REF:0000024 NCBI chr18:68,486,006...68,644,595
Ensembl chr18:68,488,942...68,551,558
JBrowse link
G Rab31 RAB31, member RAS oncogene family colocalizes_with IDA RGD PMID:11746448 RGD:2316821 NCBI chr 9:113,370,072...113,504,606
Ensembl chr 9:113,370,033...113,504,605
JBrowse link
G Rab34 RAB34, member RAS oncogene family ISO (MGI:MGI:5467668|PMID:23197834) RGD PMID:23197834 MGI:MGI:5467668 NCBI chr10:65,448,111...65,452,178
Ensembl chr10:65,448,950...65,452,177
JBrowse link
G Rab7a RAB7A, member RAS oncogene family colocalizes_with TAS
IBA
ISO
IDA
PMID:21873635
(MGI:MGI:2387806|PMID:11172003), (MGI:MGI:3527911|PMID:15588329), (MGI:MGI:4361100|PMID:19509052), (MGI:MGI:4868574|PMID:20943658), (MGI:MGI:5466421|PMID:23028046), (MGI:MGI:5515840|PMID:24035762), (MGI:MGI:5565633|PMID:24334765), (MGI:MGI:5571523|PMID:24760869), (MGI:MGI:5751042|PMID:25592972), (MGI:MGI:5883184|PMID:27390154)
(PMID:14617358), (PMID:15078902), (PMID:17010938)
(PMID:18272684)
RGD PMID:11172003, PMID:14617358, PMID:15078902, PMID:15588329, PMID:17010938, PMID:18272684, PMID:19509052, PMID:20943658, PMID:23028046, PMID:24035762, PMID:24334765, PMID:24760869, PMID:25592972, PMID:27390154, PMID:11514537, PMID:21873635, PMID:19337031 MGI:MGI:2387806, MGI:MGI:3527911, MGI:MGI:4361100, MGI:MGI:4868574, MGI:MGI:5466421, MGI:MGI:5515840, MGI:MGI:5565633, MGI:MGI:5571523, MGI:MGI:5751042, MGI:MGI:5883184, RGD:729760, RGD:13792537, RGD:4892338 NCBI chr 4:119,910,461...119,963,065
Ensembl chr 4:119,910,478...119,959,173
JBrowse link
G Rab7b Rab7b, member RAS oncogene family ISO
IBA
(PMID:20375062)
PMID:21873635
(MGI:MGI:3834524|PMID:17395780), (MGI:MGI:4355098|PMID:19587007)
RGD PMID:17395780, PMID:19587007, PMID:20375062, PMID:21873635 MGI:MGI:3834524, MGI:MGI:4355098, RGD:13792537 NCBI chr13:48,456,143...48,483,714
Ensembl chr13:48,455,923...48,482,138
JBrowse link
G Rab9a RAB9A, member RAS oncogene family ISO
IBA
(PMID:15078902)
PMID:21873635
RGD PMID:15078902, PMID:21873635 RGD:13792537 NCBI chr  X:29,525,256...29,547,295
Ensembl chr  X:29,525,256...29,547,294
JBrowse link
G Rab9b RAB9B, member RAS oncogene family IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:107,531,404...107,542,510
Ensembl chr  X:107,531,404...107,542,510
JBrowse link
G Rap1a RAP1A, member of RAS oncogene family IDA PMID:17724123 UniProt PMID:17724123 RGD:8554481 NCBI chr 2:208,193,950...208,215,186
Ensembl chr 2:208,193,954...208,215,187
JBrowse link
G Rapgef2 Rap guanine nucleotide exchange factor 2 ISO
IEA
ISS
(PMID:17724123)
GO_REF:0000044
GO_REF:0000024
RGD
UniProt
PMID:17724123 GO_REF:0000024, GO_REF:0000044 NCBI chr 2:177,836,191...178,057,378
Ensembl chr 2:177,836,202...178,057,157
JBrowse link
G Rhob ras homolog family member B ISO (MGI:MGI:3723332|PMID:17623777) RGD PMID:17623777 MGI:MGI:3723332 NCBI chr 6:33,689,127...33,691,301
Ensembl chr 6:33,689,127...33,691,301
JBrowse link
G Rilp Rab interacting lysosomal protein ISO (PMID:17010938), (PMID:18272684) RGD PMID:17010938, PMID:18272684 NCBI chr10:63,658,451...63,662,428
Ensembl chr10:63,659,085...63,662,050
JBrowse link
G Rnf128 ring finger protein 128 ISO
IBA
(MGI:MGI:2656456|PMID:12705856)
PMID:21873635
RGD PMID:12705856, PMID:21873635 MGI:MGI:2656456, RGD:13792537 NCBI chr  X:110,789,061...110,877,964
Ensembl chr  X:110,789,269...110,877,978
JBrowse link
G Rnf133 ring finger protein 133 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:50,681,843...50,686,216 JBrowse link
G Rnf148 ring finger protein 148 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:50,687,159...50,693,869
Ensembl chr 4:50,687,311...50,693,869
JBrowse link
G RT1-DMa RT1 class II, locus DMa ISO (MGI:MGI:3033762|PMID:7985028), (MGI:MGI:3033877|PMID:7584146) RGD PMID:7584146, PMID:7985028 MGI:MGI:3033762, MGI:MGI:3033877 NCBI chr20:3,935,512...3,938,915
Ensembl chr20:5,240,975...5,244,386
JBrowse link
G RT1-DMb RT1 class II, locus DMb ISO (MGI:MGI:3033877|PMID:7584146) RGD PMID:7584146 MGI:MGI:3033877 NCBI chr20:3,945,383...3,952,838
Ensembl chr20:5,227,045...5,234,290
JBrowse link
G Rubcn rubicon autophagy regulator ISO
IBA
(PMID:19270696)
PMID:21873635
RGD PMID:19270696, PMID:21873635 RGD:13792537 NCBI chr11:71,150,506...71,199,254
Ensembl chr11:71,151,132...71,197,035
JBrowse link
G Rufy1 RUN and FYVE domain containing 1 NOT ISO (MGI:MGI:2387806|PMID:11172003) RGD PMID:11172003 MGI:MGI:2387806 NCBI chr10:35,882,805...35,927,268
Ensembl chr10:35,882,805...35,927,268
JBrowse link
G Sdf4 stromal cell derived factor 4 IDA
ISS
IEA
ISO
PMID:17442889
GO_REF:0000024
GO_REF:0000107
(MGI:MGI:80005|PMID:8609160)
BHF-UCL
Ensembl
RGD
PMID:8609160, PMID:17442889 GO_REF:0000024, GO_REF:0000107, MGI:MGI:80005, RGD:2312426 NCBI chr 5:173,425,922...173,444,478
Ensembl chr 5:173,425,907...173,444,620
JBrowse link
G Siglec1 sialic acid binding Ig like lectin 1 ISO
IBA
(PMID:21359217)
PMID:21873635
RGD PMID:21359217, PMID:21873635 RGD:13792537 NCBI chr 3:123,612,067...123,631,718
Ensembl chr 3:123,612,067...123,631,109
JBrowse link
G Sla2 Src-like-adaptor 2 ISO (MGI:MGI:2180273|PMID:12024036) RGD PMID:12024036 MGI:MGI:2180273 NCBI chr 3:152,942,838...153,004,047
Ensembl chr 3:152,944,452...153,001,309
JBrowse link
G Slc11a1 solute carrier family 11 member 1 IEA
ISO
GO_REF:0000107
(MGI:MGI:3695780|PMID:16905747), (MGI:MGI:3758128|PMID:17620357), (MGI:MGI:86330|PMID:9034150)
Ensembl
RGD
PMID:9034150, PMID:16905747, PMID:17620357 GO_REF:0000107, MGI:MGI:3695780, MGI:MGI:3758128, MGI:MGI:86330 NCBI chr 9:81,655,590...81,666,697
Ensembl chr 9:81,655,629...81,666,706
JBrowse link
G Slc11a2 solute carrier family 11 member 2 ISO (PMID:12475959), (PMID:15792797), (PMID:18776082) RGD PMID:12475959, PMID:15792797, PMID:18776082 NCBI chr 7:142,025,812...142,062,892
Ensembl chr 7:142,025,815...142,063,212
JBrowse link
G Slc30a2 solute carrier family 30 member 2 ISO
IEA
(PMID:17349999)
GO_REF:0000107
RGD
Ensembl
PMID:17349999 GO_REF:0000107 NCBI chr 5:152,559,577...152,571,800
Ensembl chr 5:152,559,577...152,571,799
JBrowse link
G Slc30a3 solute carrier family 30 member 3 ISO (PMID:17349999) RGD PMID:17349999 NCBI chr 6:26,629,752...26,650,106
Ensembl chr 6:26,642,783...26,650,105
JBrowse link
G Slc30a4 solute carrier family 30 member 4 ISO
IEA
(PMID:17349999)
GO_REF:0000107
RGD
Ensembl
PMID:17349999 GO_REF:0000107 NCBI chr 3:114,805,919...114,828,154
Ensembl chr 3:114,805,922...114,828,154
JBrowse link
G Slc31a1 solute carrier family 31 member 1 ISO (MGI:MGI:5523354|PMID:24167251) RGD PMID:24167251 MGI:MGI:5523354 NCBI chr 5:78,222,504...78,249,358
Ensembl chr 5:78,222,504...78,249,358
JBrowse link
G Slc31a2 solute carrier family 31 member 2 ISO (MGI:MGI:5523354|PMID:24167251) RGD PMID:24167251 MGI:MGI:5523354 NCBI chr 5:78,120,606...78,131,111
Ensembl chr 5:78,120,607...78,131,114
JBrowse link
G Slc38a9 solute carrier family 38, member 9 ISO
ISS
(PMID:25561175)
GO_REF:0000024
RGD
UniProt
PMID:25561175 GO_REF:0000024 NCBI chr 2:44,512,556...44,592,793
Ensembl chr 2:44,512,895...44,592,053
JBrowse link
G Slc9a6 solute carrier family 9 member A6 ISO (MGI:MGI:5515840|PMID:24035762) RGD PMID:24035762 MGI:MGI:5515840 NCBI chr  X:158,979,081...159,045,019
Ensembl chr  X:158,978,755...159,045,044
JBrowse link
G Snx14 sorting nexin 14 ISO (PMID:25848753) RGD PMID:25848753 NCBI chr 8:96,018,943...96,088,405
Ensembl chr 8:96,023,445...96,088,405
JBrowse link
G Snx16 sorting nexin 16 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:12813048)
Ensembl
UniProt
RGD
PMID:12813048, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr 2:93,518,796...93,541,056
Ensembl chr 2:93,518,806...93,540,328
JBrowse link
G Sppl2a signal peptide peptidase-like 2A ISO (PMID:16829952) RGD PMID:16829952 NCBI chr 3:119,361,651...119,405,453
Ensembl chr 3:119,361,655...119,405,453
JBrowse link
G Sqstm1 sequestosome 1 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:35,704,728...35,716,316
Ensembl chr10:35,704,730...35,716,294
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase ISO (PMID:20605918) RGD PMID:20605918 NCBI chr 3:153,547,807...153,595,643
Ensembl chr 3:153,580,861...153,595,642
JBrowse link
G Stx7 syntaxin 7 ISO (PMID:18980942), (PMID:21438968) RGD PMID:18980942, PMID:21438968 NCBI chr 1:22,241,655...22,281,850
Ensembl chr 1:22,241,661...22,281,788
JBrowse link
G Stx8 syntaxin 8 ISO (PMID:10564279) RGD PMID:10564279 NCBI chr10:54,512,922...54,753,302
Ensembl chr10:54,512,983...54,753,302
JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 ISO (MGI:MGI:2664004|PMID:12672822), (MGI:MGI:3850356|PMID:19549681) RGD PMID:12672822, PMID:19549681 MGI:MGI:2664004, MGI:MGI:3850356 NCBI chr 1:219,126,687...219,139,466
Ensembl chr 1:219,127,602...219,139,464
JBrowse link
G Tf transferrin ISO (PMID:15880641) RGD PMID:15880641 NCBI chr 8:111,694,570...111,721,275
Ensembl chr 8:111,673,547...111,721,333
JBrowse link
G Ticam2 toll-like receptor adaptor molecule 2 ISO (PMID:19412184) RGD PMID:19412184 NCBI chr18:40,555,106...40,572,569
Ensembl chr18:40,555,106...40,572,241
JBrowse link
G Tmem192 transmembrane protein 192 ISO
IBA
(PMID:20370317)
PMID:21873635
RGD PMID:20370317, PMID:21873635 RGD:13792537 NCBI chr16:26,620,525...26,642,537
Ensembl chr16:26,619,598...26,633,796
JBrowse link
G Tmem230 transmembrane protein 230 ISO
ISS
(PMID:27270108)
GO_REF:0000024
RGD
UniProt
PMID:27270108 GO_REF:0000024 NCBI chr 3:124,870,867...124,879,274
Ensembl chr 3:124,870,869...124,879,216
JBrowse link
G Tmem25 transmembrane protein 25 ISO (MGI:MGI:6370252|PMID:31424425) RGD PMID:31424425 MGI:MGI:6370252 NCBI chr 8:49,100,759...49,106,258
Ensembl chr 8:49,100,759...49,106,177
JBrowse link
G Tmem59 transmembrane protein 59 ISO
IBA
(PMID:23376921)
PMID:21873635
RGD PMID:23376921, PMID:21873635 RGD:13792537 NCBI chr 5:126,783,061...126,804,177
Ensembl chr 5:126,783,061...126,804,175
JBrowse link
G Tmem9 transmembrane protein 9 ISO (PMID:12359240) RGD PMID:12359240 NCBI chr13:52,854,031...52,871,300
Ensembl chr13:52,854,031...52,871,297
JBrowse link
G Trappc9 trafficking protein particle complex 9 NOT ISO (MGI:MGI:4438815|PMID:20004763) RGD PMID:20004763 MGI:MGI:4438815 NCBI chr 7:113,986,363...114,309,090
Ensembl chr 7:113,681,793...114,305,896
JBrowse link
G Tsg101 tumor susceptibility 101 ISO (PMID:15126635) RGD PMID:15126635 NCBI chr 1:102,941,151...102,971,017
Ensembl chr 1:102,941,231...102,970,950
JBrowse link
G Ttpa alpha tocopherol transfer protein IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:14531858, PMID:21873635 RGD:1600431, RGD:13792537 NCBI chr 5:34,007,926...34,029,315
Ensembl chr 5:34,007,920...34,028,452
JBrowse link
G Unc13d unc-13 homolog D IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:104,613,907...104,628,664
Ensembl chr10:104,613,928...104,628,676
JBrowse link
G Uvrag UV radiation resistance associated ISO (PMID:19270696) RGD PMID:19270696 NCBI chr 1:163,844,804...164,101,568
Ensembl chr 1:163,844,818...164,101,578
JBrowse link
G Vamp5 vesicle-associated membrane protein 5 ISO (MGI:MGI:1858282|PMID:9725904) RGD PMID:9725904 MGI:MGI:1858282 NCBI chr 4:100,231,561...100,232,560
Ensembl chr 4:100,231,561...100,232,559
JBrowse link
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog IEA
ISO
GO_REF:0000107
(PMID:19109425)
Ensembl
RGD
PMID:19109425 GO_REF:0000107 NCBI chr 6:111,271,283...111,296,013
Ensembl chr 6:111,271,240...111,295,994
JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes colocalizes_with ISO (PMID:11382755)
(PMID:21148287)
RGD PMID:11382755, PMID:21148287 NCBI chr 8:48,677,492...48,692,295
Ensembl chr 8:48,677,492...48,692,295
JBrowse link
G Vps16 VPS16 core subunit of CORVET and HOPS complexes ISO (PMID:11382755), (PMID:19109425) RGD PMID:11382755, PMID:19109425 NCBI chr 3:122,947,887...122,969,543
Ensembl chr 3:122,947,913...122,969,541
JBrowse link
G Vps18 VPS18 core subunit of CORVET and HOPS complexes ISO (PMID:11382755) RGD PMID:11382755 NCBI chr 3:111,097,352...111,108,206
Ensembl chr 3:111,097,326...111,108,295
JBrowse link
G Vps26b VPS26 retromer complex component B ISO (MGI:MGI:5607223|PMID:21920005) RGD PMID:21920005 MGI:MGI:5607223 NCBI chr 8:28,054,407...28,075,514
Ensembl chr 8:28,054,407...28,075,514
JBrowse link
G Vps29 VPS29 retromer complex component IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:39,690,069...39,699,114
Ensembl chr12:39,690,069...39,699,113
JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes ISO (PMID:19109425) RGD PMID:19109425 NCBI chr12:38,459,816...38,482,903
Ensembl chr12:38,459,832...38,484,512
JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated ISO (PMID:15052268) RGD PMID:15052268 NCBI chr 1:142,060,955...142,083,955
Ensembl chr 1:142,060,955...142,083,953
JBrowse link
G Vps35 VPS35 retromer complex component IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:27,464,937...27,500,636
Ensembl chr19:27,464,937...27,500,636
JBrowse link
G Vps36 vacuolar protein sorting 36 homolog ISO (MGI:MGI:3582124|PMID:15755741) RGD PMID:15755741 MGI:MGI:3582124 NCBI chr16:74,719,642...74,743,921
Ensembl chr16:74,719,553...74,743,927
JBrowse link
G Vps41 VPS41 subunit of HOPS complex ISO
IBA
(MGI:MGI:3042340|PMID:14668490)
PMID:21873635
RGD PMID:14668490, PMID:21873635 MGI:MGI:3042340, RGD:13792537 NCBI chr17:48,643,754...48,810,633
Ensembl chr17:48,648,879...48,810,991
JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A ISO (PMID:10637304), (PMID:15075231) RGD PMID:10637304, PMID:15075231 NCBI chr19:39,230,050...39,243,298
Ensembl chr19:39,229,754...39,243,496
JBrowse link
G Washc1 WASH complex subunit 1 IEA
ISO
GO_REF:0000107
(MGI:MGI:5883184|PMID:27390154)
Ensembl
RGD
PMID:27390154 GO_REF:0000107, MGI:MGI:5883184 NCBI chr 9:113,918,914...113,936,861
Ensembl chr 9:113,918,858...113,936,860
JBrowse link
G Wdr48 WD repeat domain 48 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:128,577,080...128,610,287
Ensembl chr 8:128,577,080...128,610,287
JBrowse link
G Zc3hav1 zinc finger CCCH-type containing, antiviral 1 ISO (MGI:MGI:5499037|PMID:23776219) RGD PMID:23776219 MGI:MGI:5499037 NCBI chr 4:66,012,111...66,062,160
Ensembl chr 4:66,011,915...66,062,089
JBrowse link
cytoplasmic side of late endosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdip1 cell death-inducing p53 target 1 ISO
ISS
(PMID:27582497)
GO_REF:0000024
RGD
UniProt
PMID:27582497 GO_REF:0000024 NCBI chr10:10,966,819...10,989,937
Ensembl chr10:10,967,658...10,989,936
JBrowse link
G Litaf lipopolysaccharide-induced TNF factor ISO
ISS
(PMID:27582497)
GO_REF:0000024
RGD
UniProt
PMID:27582497 GO_REF:0000024 NCBI chr10:4,753,546...4,763,272
Ensembl chr10:4,719,713...4,763,510
JBrowse link
late endosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca5 ATP binding cassette subfamily A member 5 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:98,573,226...98,645,028
Ensembl chr10:98,576,039...98,644,938
JBrowse link
G Abhd6 abhydrolase domain containing 6, acylglycerol lipase ISS
ISO
GO_REF:0000024
(MGI:MGI:5700445|PMID:26491015)
UniProt
RGD
PMID:26491015 GO_REF:0000024, MGI:MGI:5700445 NCBI chr15:18,647,903...18,695,133
Ensembl chr15:18,647,844...18,695,133
JBrowse link
G Anxa2 annexin A2 ISO (PMID:23360953) RGD PMID:23360953 NCBI chr 8:75,687,134...75,723,589
Ensembl chr 8:75,687,100...75,723,594
JBrowse link
G Anxa6 annexin A6 IEA
ISO
GO_REF:0000107
(PMID:23360953)
Ensembl
RGD
PMID:23360953 GO_REF:0000107 NCBI chr10:40,320,581...40,375,605
Ensembl chr10:40,320,581...40,375,605
JBrowse link
G Anxa8 annexin A8 ISO (PMID:18923148) RGD PMID:18923148 NCBI chr16:10,417,174...10,432,388
Ensembl chr16:10,417,185...10,432,393
JBrowse link
G Ap5m1 adaptor related protein complex 5 subunit mu 1 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr15:25,933,483...25,955,745
Ensembl chr15:25,933,483...25,955,745
JBrowse link
G Arl8b ADP-ribosylation factor like GTPase 8B IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:140,837,745...140,881,866
Ensembl chr 4:140,837,745...140,881,865
JBrowse link
G Atg9a autophagy related 9A IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:82,382,800...82,393,429
Ensembl chr 9:82,382,800...82,393,382
JBrowse link
G Baiap3 BAI1-associated protein 3 ISO (PMID:28626000) RGD PMID:28626000 NCBI chr10:14,601,133...14,613,881
Ensembl chr10:14,599,197...14,613,878
JBrowse link
G Cd63 Cd63 molecule ISO
ISS
(PMID:23632027)
GO_REF:0000024
RGD
UniProt
PMID:23632027 GO_REF:0000024 NCBI chr 7:3,320,250...3,335,583
Ensembl chr 7:3,320,103...3,335,582
JBrowse link
G Cd68 Cd68 molecule IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:56,268,726...56,270,605
Ensembl chr10:56,268,720...56,270,640
JBrowse link
G Chmp3 charged multivesicular body protein 3 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:99,449,213...99,496,156
Ensembl chr 4:99,449,111...99,494,423
JBrowse link
G Chmp4c charged multivesicular body protein 4C IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:93,574,554...93,641,497
Ensembl chr 2:93,574,559...93,641,497
JBrowse link
G Clcn3 chloride voltage-gated channel 3 IEA
ISO
GO_REF:0000044
(MGI:MGI:6414705|PMID:16222710)
UniProt
RGD
PMID:16222710 GO_REF:0000044, MGI:MGI:6414705 NCBI chr16:32,448,821...32,520,649
Ensembl chr16:32,449,116...32,519,148
JBrowse link
G Clcn4 chloride voltage-gated channel 4 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:25,016,177...25,082,563
Ensembl chr  X:25,016,401...25,080,410
JBrowse link
G Cyb561a3 cytochrome b561 family, member A3 ISO
ISS
(MGI:MGI:3695337|PMID:16996694)
GO_REF:0000024
RGD
UniProt
PMID:16996694 GO_REF:0000024, MGI:MGI:3695337 NCBI chr 1:226,620,933...226,642,246
Ensembl chr 1:226,634,009...226,642,243
JBrowse link
G Gosr2 golgi SNAP receptor complex member 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:91,735,772...91,756,123
Ensembl chr10:91,736,780...91,756,081
JBrowse link
G Ifitm3 interferon induced transmembrane protein 3 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:213,810,712...213,811,821
Ensembl chr 1:213,810,696...213,811,901
JBrowse link
G Lamp1 lysosomal-associated membrane protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:81,689,576...81,714,341
Ensembl chr16:81,689,335...81,714,419
JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 ISO
IBA
(PMID:21896273)
PMID:21873635
(MGI:MGI:5291841|PMID:21896273)
RGD PMID:21896273, PMID:21873635 MGI:MGI:5291841, RGD:13792537 NCBI chr  X:124,722,628...124,766,079
Ensembl chr  X:124,722,628...124,766,044
JBrowse link
G Lamp3 lysosomal-associated membrane protein 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:84,930,965...85,000,694
Ensembl chr11:84,972,132...85,000,681
JBrowse link
G Lamp5 lysosomal-associated membrane protein family, member 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:129,012,677...129,031,522
Ensembl chr 3:129,018,592...129,031,521
JBrowse link
G Lamtor1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 IDA PMID:19177150 UniProt PMID:19177150 RGD:8553879 NCBI chr 1:166,991,474...166,997,045
Ensembl chr 1:166,991,474...166,997,045
JBrowse link
G Laptm4a lysosomal protein transmembrane 4 alpha ISO
ISS
(PMID:22096579)
GO_REF:0000024
RGD
UniProt
PMID:22096579 GO_REF:0000024 NCBI chr 6:34,042,132...34,059,960
Ensembl chr 6:34,028,936...34,059,961
JBrowse link
G Laptm4b lysosomal protein transmembrane 4 beta ISS
ISO
GO_REF:0000024
(PMID:21224396), (PMID:22096579), (PMID:25588945)
UniProt
RGD
PMID:21224396, PMID:22096579, PMID:25588945 GO_REF:0000024 NCBI chr 7:72,924,911...72,968,099
Ensembl chr 7:72,924,799...72,968,101
JBrowse link
G LOC100361543 RhoA activator C11orf59-like IDA PMID:19177150 UniProt PMID:19177150 RGD:8553879 NCBI chr  X:37,261,428...37,262,470
Ensembl chr 1:166,991,474...166,997,045
JBrowse link
G Marchf1 membrane associated ring-CH-type finger 1 ISO
IBA
(PMID:19117940)
PMID:21873635
(MGI:MGI:4430128|PMID:19880452)
RGD PMID:19117940, PMID:19880452, PMID:21873635 MGI:MGI:4430128, RGD:13792537 NCBI chr16:24,998,709...25,856,327
Ensembl chr16:25,001,666...25,192,675
JBrowse link
G Marchf8 membrane associated ring-CH-type finger 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:148,285,467...148,398,148
Ensembl chr 4:148,286,853...148,398,148
JBrowse link
G Micall1 MICAL-like 1 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:120,343,900...120,375,151
Ensembl chr 7:120,345,180...120,375,156
JBrowse link
G Mitd1 microtubule interacting and trafficking domain containing 1 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:44,472,364...44,483,723
Ensembl chr 9:44,472,365...44,560,837
JBrowse link
G Mmd monocyte to macrophage differentiation-associated IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:77,687,964...77,783,737
Ensembl chr10:77,755,216...77,783,779
JBrowse link
G Mr1 major histocompatibility complex, class I-related ISO
IEA
(PMID:27043408)
GO_REF:0000107
RGD
Ensembl
PMID:27043408 GO_REF:0000107 NCBI chr13:72,771,992...72,789,861
Ensembl chr13:72,771,984...72,789,841
JBrowse link
G Mreg melanoregulin ISO (MGI:MGI:6244097|PMID:30174147) RGD PMID:30174147 MGI:MGI:6244097 NCBI chr 9:79,490,058...79,559,768
Ensembl chr 9:79,490,050...79,545,024
JBrowse link
G Mvb12a multivesicular body subunit 12A IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr16:19,973,611...19,978,479
Ensembl chr16:19,973,636...19,978,478
JBrowse link
G Mvb12b multivesicular body subunit 12B IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:12,780,196...12,944,542
Ensembl chr 3:12,780,100...12,944,494
JBrowse link
G Ntrk1 neurotrophic receptor tyrosine kinase 1 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:187,143,568...187,160,373
Ensembl chr 2:187,143,568...187,160,373
JBrowse link
G Pip4p1 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1 ISO
ISS
(PMID:16365287)
(MGI:MGI:6144310|PMID:29378918)
GO_REF:0000024
RGD
UniProt
PMID:16365287, PMID:29378918 GO_REF:0000024, MGI:MGI:6144310 NCBI chr15:27,852,152...27,855,999
Ensembl chr15:27,852,154...27,855,999
JBrowse link
G Pip4p2 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 ISO
ISS
(PMID:16365287)
(MGI:MGI:6144310|PMID:29378918)
GO_REF:0000024
RGD
UniProt
PMID:16365287, PMID:29378918 GO_REF:0000024, MGI:MGI:6144310 NCBI chr 5:28,395,517...28,442,924
Ensembl chr 5:28,395,296...28,442,924
JBrowse link
G Pld1 phospholipase D1 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:113,651,967...113,849,403
Ensembl chr 2:113,652,348...113,849,403
JBrowse link
G Pld3 phospholipase D family, member 3 ISS
ISO
GO_REF:0000024
(MGI:MGI:6115966|PMID:28128235)
(PMID:29386126)
UniProt
RGD
PMID:28128235, PMID:29386126 GO_REF:0000024, MGI:MGI:6115966 NCBI chr 1:84,339,269...84,361,686
Ensembl chr 1:84,339,261...84,353,725
JBrowse link
G Rab7a RAB7A, member RAS oncogene family ISO
ISS
(MGI:MGI:5689086|PMID:23708524)
GO_REF:0000024
RGD
GO_Central
PMID:23708524 GO_REF:0000024, MGI:MGI:5689086 NCBI chr 4:119,910,461...119,963,065
Ensembl chr 4:119,910,478...119,959,173
JBrowse link
G RGD1566265 similar to RIKEN cDNA 2610002M06 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:78,870,964...78,911,601
Ensembl chr  X:78,870,964...78,911,601
JBrowse link
G Rhob ras homolog family member B IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:33,689,127...33,691,301
Ensembl chr 6:33,689,127...33,691,301
JBrowse link
G Rmc1 regulator of MON1-CCZ1 ISO
IBA
(PMID:29038162)
PMID:21873635
RGD PMID:29038162, PMID:21873635 RGD:13792537 NCBI chr18:3,597,210...3,617,160
Ensembl chr18:3,597,240...3,617,283
JBrowse link
G Rnf13 ring finger protein 13 ISO
ISS
(MGI:MGI:3844769|PMID:19292867)
GO_REF:0000024
RGD
UniProt
PMID:19292867 GO_REF:0000024, MGI:MGI:3844769 NCBI chr 2:147,853,423...147,948,277
Ensembl chr 2:147,853,423...148,039,132
JBrowse link
G RT1-Da RT1 class II, locus Da ISO (PMID:18305173), (PMID:19117940) RGD PMID:18305173, PMID:19117940 NCBI chr20:4,127,644...4,132,616
Ensembl chr20:4,127,644...4,132,616
JBrowse link
G RT1-Db1 RT1 class II, locus Db1 ISO (PMID:18305173) RGD PMID:18305173 NCBI chr20:4,087,621...4,097,190
Ensembl chr20:4,087,618...4,097,190
JBrowse link
G Slc11a2 solute carrier family 11 member 2 IDA
IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:10751401)
Ensembl
RGD
PMID:10751401, PMID:16449358, PMID:21873635 GO_REF:0000107, RGD:1580424, RGD:13792537 NCBI chr 7:142,025,812...142,062,892
Ensembl chr 7:142,025,815...142,063,212
JBrowse link
G Slc1a1 solute carrier family 1 member 1 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:246,955,017...247,035,159
Ensembl chr 1:246,954,980...247,037,056
JBrowse link
G Slc29a3 solute carrier family 29 member 3 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr20:30,289,527...30,327,343
Ensembl chr20:30,287,424...30,327,361
JBrowse link
G Slc30a3 solute carrier family 30 member 3 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:26,629,752...26,650,106
Ensembl chr 6:26,642,783...26,650,105
JBrowse link
G Slc30a4 solute carrier family 30 member 4 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:114,805,919...114,828,154
Ensembl chr 3:114,805,922...114,828,154
JBrowse link
G Slc39a14 solute carrier family 39 member 14 ISO (PMID:27703010) RGD PMID:27703010 NCBI chr15:51,982,872...52,029,841
Ensembl chr15:51,982,982...52,029,816
JBrowse link
G Snf8 SNF8 subunit of ESCRT-II ISO (PMID:17010938) RGD PMID:17010938 NCBI chr10:83,856,331...83,868,621
Ensembl chr10:83,856,280...83,868,598
JBrowse link
G Snx16 sorting nexin 16 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:93,518,796...93,541,056
Ensembl chr 2:93,518,806...93,540,328
JBrowse link
G Sppl2a signal peptide peptidase-like 2A ISO (MGI:MGI:5291841|PMID:21896273) RGD PMID:21896273 MGI:MGI:5291841 NCBI chr 3:119,361,651...119,405,453
Ensembl chr 3:119,361,655...119,405,453
JBrowse link
G Stard3 StAR-related lipid transfer domain containing 3 ISO (PMID:24105263), (PMID:28377464) RGD PMID:24105263, PMID:28377464 NCBI chr10:86,313,430...86,335,868
Ensembl chr10:86,313,383...86,335,923
JBrowse link
G Stard3nl STARD3 N-terminal like ISO (PMID:24105263) RGD PMID:24105263 NCBI chr17:47,662,553...47,696,453
Ensembl chr17:47,662,532...47,696,444
JBrowse link
G Stx7 syntaxin 7 IDA RGD PMID:15133481 RGD:4892614 NCBI chr 1:22,241,655...22,281,850
Ensembl chr 1:22,241,661...22,281,788
JBrowse link
G Stx8 syntaxin 8 IDA RGD PMID:15133481 RGD:4892614 NCBI chr10:54,512,922...54,753,302
Ensembl chr10:54,512,983...54,753,302
JBrowse link
G Tmem106b transmembrane protein 106B IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:39,517,679...39,534,491
Ensembl chr 4:39,517,548...39,535,169
JBrowse link
G Tmem165 transmembrane protein 165 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:34,503,037...34,528,262
Ensembl chr14:34,503,038...34,528,262
JBrowse link
G Tsg101 tumor susceptibility 101 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:102,941,151...102,971,017
Ensembl chr 1:102,941,231...102,970,950
JBrowse link
G Ubxn6 UBX domain protein 6 ISO (PMID:21822278) RGD PMID:21822278 NCBI chr 9:10,995,516...11,000,643
Ensembl chr 9:10,995,198...11,000,642
JBrowse link
G Vamp7 vesicle-associated membrane protein 7 IDA PMID:10459012 RGD
UniProt
PMID:15133481, PMID:10459012 RGD:4892614, RGD:8554473 NCBI chr12:18,996,566...19,033,714
Ensembl chr12:18,996,591...19,030,381
JBrowse link
G Vamp8 vesicle-associated membrane protein 8 IDA
ISO
IEA
(PMID:23217709)
GO_REF:0000107
RGD
Ensembl
PMID:23217709, PMID:15133481 GO_REF:0000107, RGD:4892614 NCBI chr 4:100,250,301...100,252,756
Ensembl chr 4:100,250,301...100,252,755
JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:48,677,492...48,692,295
Ensembl chr 8:48,677,492...48,692,295
JBrowse link
G Vps16 VPS16 core subunit of CORVET and HOPS complexes IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:122,947,887...122,969,543
Ensembl chr 3:122,947,913...122,969,541
JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:38,459,816...38,482,903
Ensembl chr12:38,459,832...38,484,512
JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:142,060,955...142,083,955
Ensembl chr 1:142,060,955...142,083,953
JBrowse link
G Vps36 vacuolar protein sorting 36 homolog IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:17010938)
Ensembl
RGD
PMID:17010938, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr16:74,719,642...74,743,921
Ensembl chr16:74,719,553...74,743,927
JBrowse link
G Vps37a VPS37A subunit of ESCRT-I IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr16:54,860,811...54,899,410
Ensembl chr16:54,860,868...54,899,347
JBrowse link
G Vps37b VPS37B subunit of ESCRT-I IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:37,984,790...38,023,369
Ensembl chr12:37,984,790...38,023,368
JBrowse link
G Vps37c VPS37C subunit of ESCRT-I IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:226,742,267...226,774,109
Ensembl chr 1:226,742,343...226,767,868
JBrowse link
G Vps37d VPS37D subunit of ESCRT-I IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:24,651,342...24,656,793
Ensembl chr12:24,651,314...24,656,793
JBrowse link
G Vps39 VPS39 subunit of HOPS complex ISO (PMID:23167963) RGD PMID:23167963 NCBI chr 3:112,087,213...112,125,307
Ensembl chr 3:112,087,677...112,125,318
JBrowse link
G Vps41 VPS41 subunit of HOPS complex ISO (PMID:23167963) RGD PMID:23167963 NCBI chr17:48,643,754...48,810,633
Ensembl chr17:48,648,879...48,810,991
JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr19:39,230,050...39,243,298
Ensembl chr19:39,229,754...39,243,496
JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:276,310,072...276,508,635
Ensembl chr 1:276,309,927...276,490,602
JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B ISS
IBA
IEA
ISO
GO_REF:0000024
PMID:21873635
GO_REF:0000107
(PMID:18033301), (PMID:23217709)
UniProt
Ensembl
RGD
PMID:18033301, PMID:23217709, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr 6:102,340,261...102,353,612
Ensembl chr 6:102,339,857...102,353,403
JBrowse link
G Wdr81 WD repeat domain 81 ISS
ISO
GO_REF:0000024
(PMID:26783301), (PMID:27126989), (PMID:28404643)
UniProt
RGD
PMID:26783301, PMID:27126989, PMID:28404643 GO_REF:0000024 NCBI chr10:62,273,817...62,287,213
Ensembl chr10:62,273,800...62,287,189
JBrowse link
G Wdr91 WD repeat domain 91 ISS
ISO
GO_REF:0000024
(PMID:26783301), (PMID:28404643)
UniProt
RGD
PMID:26783301, PMID:28404643 GO_REF:0000024 NCBI chr 4:62,398,073...62,438,958
Ensembl chr 4:62,398,797...62,438,958
JBrowse link
G Yipf1 Yip1 domain family, member 1 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:126,932,730...126,968,110
Ensembl chr 5:126,932,760...126,968,190
JBrowse link
G Yipf2 Yip1 domain family, member 2 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:22,621,758...22,625,959
Ensembl chr 8:22,621,782...22,625,959
JBrowse link
Mon1-Ccz1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccz1b CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated ISO (PMID:29038162) RGD PMID:29038162 NCBI chr12:12,638,849...12,662,371
Ensembl chr12:12,638,864...12,662,371
JBrowse link
G Mon1a MON1 homolog A, secretory trafficking associated ISO (PMID:29038162) RGD PMID:29038162 NCBI chr 8:116,657,345...116,682,172
Ensembl chr 8:116,657,371...116,682,178
JBrowse link
G Mon1b MON1 homolog B, secretory trafficking associated ISO (PMID:29038162) RGD PMID:29038162 NCBI chr19:45,938,433...45,946,647
Ensembl chr19:45,938,915...45,945,741
JBrowse link
G Rmc1 regulator of MON1-CCZ1 ISO
IBA
(PMID:29038162)
PMID:21873635
RGD PMID:29038162, PMID:21873635 RGD:13792537 NCBI chr18:3,597,210...3,617,160
Ensembl chr18:3,597,240...3,617,283
JBrowse link
multivesicular body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07006691.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:248,428,099...248,463,139 JBrowse link
G Acp3 acid phosphatase 3 IDA RGD PMID:977936 RGD:2299977 NCBI chr 8:112,838,574...112,884,062
Ensembl chr 8:112,834,707...112,884,077
JBrowse link
G Atp13a2 ATPase cation transporting 13A2 ISO (PMID:24603074), (PMID:25392495) RGD PMID:24603074, PMID:25392495 NCBI chr 5:159,512,208...159,531,631
Ensembl chr 5:159,512,285...159,531,637
JBrowse link
G Bace1 beta-secretase 1 ISO (PMID:24612608) RGD PMID:24612608 NCBI chr 8:50,140,092...50,162,388
Ensembl chr 8:50,139,997...50,162,361
JBrowse link
G Bst2 bone marrow stromal cell antigen 2 ISO (PMID:22072966) RGD PMID:22072966 NCBI chr16:19,938,781...19,942,353
Ensembl chr16:19,938,784...19,942,353
JBrowse link
G Cd74 CD74 molecule ISO (MGI:MGI:3033879|PMID:11854359) RGD PMID:11854359 MGI:MGI:3033879 NCBI chr18:56,071,420...56,080,851
Ensembl chr18:56,071,478...56,080,849
JBrowse link
G Cd79a CD79a molecule ISO (MGI:MGI:3033879|PMID:11854359) RGD PMID:11854359 MGI:MGI:3033879 NCBI chr 1:81,763,609...81,768,039
Ensembl chr 1:81,763,614...81,767,980
JBrowse link
G Chmp1a charged multivesicular body protein 1A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:56,001,724...56,010,004
Ensembl chr19:56,001,724...56,010,004
JBrowse link
G Chmp2a charged multivesicular body protein 2A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:65,540,808...65,543,708
Ensembl chr 1:65,541,322...65,543,707
JBrowse link
G Chmp2b charged multivesicular body protein 2B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:2,666,405...2,692,213
Ensembl chr11:2,665,285...2,692,198
JBrowse link
G Chmp3 charged multivesicular body protein 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:99,449,213...99,496,156
Ensembl chr 4:99,449,111...99,494,423
JBrowse link
G Chmp4b charged multivesicular body protein 4B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:150,188,275...150,227,453
Ensembl chr 3:150,188,455...150,227,405
JBrowse link
G Chmp4bl1 chromatin modifying protein 4B-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:67,059,939...67,060,988
Ensembl chr 4:67,059,939...67,060,974
JBrowse link
G Chmp4c charged multivesicular body protein 4C IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:93,574,554...93,641,497
Ensembl chr 2:93,574,559...93,641,497
JBrowse link
G Chmp5 charged multivesicular body protein 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:57,267,312...57,284,455
Ensembl chr 5:57,267,312...57,284,448
JBrowse link
G Chmp6 charged multivesicular body protein 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:109,073,678...109,079,348
Ensembl chr10:109,073,678...109,079,348
JBrowse link
G Chmp7 charged multivesicular body protein 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:51,385,373...51,400,606
Ensembl chr15:51,385,386...51,400,606
JBrowse link
G Crhbp corticotropin releasing hormone binding protein IDA RGD PMID:10524337 RGD:5490549 NCBI chr 2:25,141,471...25,153,334
Ensembl chr 2:25,141,471...25,153,334
JBrowse link
G Crhr1 corticotropin releasing hormone receptor 1 IDA Purkinje cells beginning postnatal day 3 RGD PMID:12911751 RGD:1626245 NCBI chr10:92,191,473...92,233,662
Ensembl chr10:92,191,718...92,232,645
JBrowse link
G Cst3 cystatin C IDA RGD PMID:10950881 RGD:2306514 NCBI chr 3:143,219,671...143,223,544
Ensembl chr 3:143,219,686...143,223,615
JBrowse link
G Cst7 cystatin F ISO (PMID:22365146) RGD PMID:22365146 NCBI chr 3:146,363,913...146,373,365
Ensembl chr 3:146,365,092...146,373,365
JBrowse link
G Ctsl cathepsin L ISO (PMID:22365146) RGD PMID:22365146 NCBI chr17:1,873,105...1,879,266
Ensembl chr17:1,872,848...1,879,279
JBrowse link
G Ecpas Ecm29 proteasome adaptor and scaffold ISO (PMID:20682791) RGD PMID:20682791 NCBI chr 5:75,928,510...76,040,771
Ensembl chr 5:75,931,293...76,039,760
JBrowse link
G Gfra1 GDNF family receptor alpha 1 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:279,203,046...279,572,789 JBrowse link
G Gja1 gap junction protein, alpha 1 IDA RGD PMID:16162097 RGD:1582681 NCBI chr20:37,876,650...37,889,097
Ensembl chr20:37,876,650...37,889,089
JBrowse link
G Lamp1 lysosomal-associated membrane protein 1 IDA
ISO
(MGI:MGI:3033879|PMID:11854359) RGD PMID:11854359, PMID:7868367 MGI:MGI:3033879, RGD:4892636 NCBI chr16:81,689,576...81,714,341
Ensembl chr16:81,689,335...81,714,419
JBrowse link
G LOC100909593 class II histocompatibility antigen, M alpha chain-like ISO (MGI:MGI:3033879|PMID:11854359) RGD PMID:11854359 MGI:MGI:3033879 NCBI chr20:3,935,501...3,938,915 JBrowse link
G Lrat lecithin retinol acyltransferase IDA RGD PMID:18544127 RGD:6893660 NCBI chr 2:181,896,304...181,905,366
Ensembl chr 2:181,896,305...181,905,300
JBrowse link
G Prkar1a protein kinase cAMP-dependent type I regulatory subunit alpha ISO (MGI:MGI:5293291|PMID:21502359) RGD PMID:21502359 MGI:MGI:5293291 NCBI chr10:97,940,705...97,959,199
Ensembl chr10:97,940,705...97,957,336
JBrowse link
G Prkar1b protein kinase cAMP-dependent type I regulatory subunit beta ISO
IEA
(MGI:MGI:5293291|PMID:21502359)
GO_REF:0000107
RGD
Ensembl
PMID:21502359 GO_REF:0000107, MGI:MGI:5293291 NCBI chr12:17,614,536...17,713,567
Ensembl chr12:17,614,632...17,712,373
JBrowse link
G Rab11a RAB11a, member RAS oncogene family ISO (PMID:15634213) RGD PMID:15634213 NCBI chr 8:70,192,975...70,215,719
Ensembl chr 8:70,192,975...70,215,719
JBrowse link
G RGD1566265 similar to RIKEN cDNA 2610002M06 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:78,870,964...78,911,601
Ensembl chr  X:78,870,964...78,911,601
JBrowse link
G RT1-Bb RT1 class II, locus Bb ISO
IEA
(MGI:MGI:3033879|PMID:11854359)
GO_REF:0000107
RGD
Ensembl
PMID:11854359 GO_REF:0000107, MGI:MGI:3033879 NCBI chr20:4,043,726...4,049,367
Ensembl chr20:4,039,413...4,049,711
JBrowse link
G RT1-DMa RT1 class II, locus DMa ISO (MGI:MGI:3033879|PMID:11854359) RGD PMID:11854359 MGI:MGI:3033879 NCBI chr20:3,935,512...3,938,915
Ensembl chr20:5,240,975...5,244,386
JBrowse link
G RT1-DMb RT1 class II, locus DMb ISO (MGI:MGI:3033879|PMID:11854359) RGD PMID:11854359 MGI:MGI:3033879 NCBI chr20:3,945,383...3,952,838
Ensembl chr20:5,227,045...5,234,290
JBrowse link
G Sftpa1 surfactant protein A1 IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:16187065, PMID:21873635 RGD:4143471, RGD:13792537 NCBI chr16:18,716,019...18,719,404
Ensembl chr16:18,716,019...18,719,403
JBrowse link
G Sftpb surfactant protein B IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:16187065, PMID:21873635 RGD:4143471, RGD:13792537 NCBI chr 4:100,166,855...100,175,941
Ensembl chr 4:100,166,863...100,175,938
JBrowse link
G Sftpc surfactant protein C IDA RGD PMID:16187065 RGD:4143471 NCBI chr15:52,211,538...52,214,480
Ensembl chr15:52,211,544...52,214,616
JBrowse link
G Sftpd surfactant protein D IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:16187065, PMID:21873635 RGD:4143471, RGD:13792537 NCBI chr16:18,753,535...18,766,100
Ensembl chr16:18,745,458...18,766,174
JBrowse link
G Slc17a8 solute carrier family 17 member 8 IDA RGD PMID:12388773 RGD:625707 NCBI chr 7:30,215,231...30,274,993
Ensembl chr 7:30,216,104...30,274,984
JBrowse link
G Slc2a4 solute carrier family 2 member 4 IDA RGD PMID:1881917 RGD:2306204 NCBI chr10:56,552,921...56,558,562
Ensembl chr10:56,552,983...56,558,487
JBrowse link
G Sorl1 sortilin related receptor 1 IDA
ISO
(PMID:21385844) RGD PMID:21385844, PMID:16452683 RGD:1581100 NCBI chr 8:46,228,077...46,287,171 JBrowse link
G Steap3 STEAP3 metalloreductase ISO
IEA
(PMID:15319436)
GO_REF:0000107
RGD
Ensembl
PMID:15319436 GO_REF:0000107 NCBI chr13:36,257,220...36,274,144
Ensembl chr13:36,257,112...36,290,531
JBrowse link
G Tpt1 tumor protein, translationally-controlled 1 ISO (PMID:15319436) RGD PMID:15319436 NCBI chr15:57,891,680...57,894,504
Ensembl chr15:57,891,680...57,894,504
JBrowse link
G Vta1 vesicle trafficking 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:8,830,405...8,878,191
Ensembl chr 1:8,830,411...8,878,244
JBrowse link
G Zp2 zona pellucida glycoprotein 2 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:3690518|PMID:17047254)
Ensembl
UniProt
RGD
PMID:17047254 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3690518 NCBI chr 1:189,899,906...189,911,650
Ensembl chr 1:189,899,892...189,911,650
JBrowse link
multivesicular body membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd63 Cd63 molecule IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:26280656)
Ensembl
UniProt
RGD
PMID:26280656 GO_REF:0000024, GO_REF:0000107 NCBI chr 7:3,320,250...3,335,583
Ensembl chr 7:3,320,103...3,335,582
JBrowse link
G Gimap5 GTPase, IMAP family member 5 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:78,377,228...78,386,683
Ensembl chr 4:78,378,144...78,385,577
JBrowse link
G Hgs hepatocyte growth factor-regulated tyrosine kinase substrate IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:109,638,944...109,657,460
Ensembl chr10:109,638,767...109,657,456
JBrowse link
G Laptm4b lysosomal protein transmembrane 4 beta ISS
ISO
GO_REF:0000024
(PMID:25588945), (PMID:26280656)
UniProt
RGD
PMID:25588945, PMID:26280656 GO_REF:0000024 NCBI chr 7:72,924,911...72,968,099
Ensembl chr 7:72,924,799...72,968,101
JBrowse link
G Nsg1 neuronal vesicle trafficking associated 1 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:77,380,264...77,402,007
Ensembl chr14:77,380,262...77,401,996
JBrowse link
G Nsg2 neuronal vesicle trafficking associated 2 ISO
ISS
(MGI:MGI:70373|PMID:7829526)
GO_REF:0000024
RGD
UniProt
PMID:7829526 GO_REF:0000024, MGI:MGI:70373 NCBI chr10:15,867,885...15,928,169
Ensembl chr10:15,867,887...15,928,169
JBrowse link
G Pmel premelanosome protein ISO (PMID:11694580) RGD PMID:11694580 NCBI chr 7:3,133,347...3,143,827
Ensembl chr 7:3,133,506...3,143,911
JBrowse link
G Rab27a RAB27A, member RAS oncogene family ISO (PMID:19966785) RGD PMID:19966785 NCBI chr 8:79,722,334...79,776,228
Ensembl chr 8:79,722,334...79,776,221
JBrowse link
G Rab27b RAB27B, member RAS oncogene family ISO (PMID:19966785) RGD PMID:19966785 NCBI chr18:68,486,006...68,644,595
Ensembl chr18:68,488,942...68,551,558
JBrowse link
G Sorl1 sortilin related receptor 1 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:46,228,077...46,287,171 JBrowse link
G Tmem9 transmembrane protein 9 ISO (PMID:30374053) RGD PMID:30374053 NCBI chr13:52,854,031...52,871,300
Ensembl chr13:52,854,031...52,871,297
JBrowse link
multivesicular body, internal vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd63 Cd63 molecule IEA
ISO
ISS
GO_REF:0000107
(PMID:21962903), (PMID:26280656)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:21962903, PMID:26280656 GO_REF:0000024, GO_REF:0000107 NCBI chr 7:3,320,250...3,335,583
Ensembl chr 7:3,320,103...3,335,582
JBrowse link
G Laptm4b lysosomal protein transmembrane 4 beta ISO
ISS
(PMID:26280656)
GO_REF:0000024
RGD
UniProt
PMID:26280656 GO_REF:0000024 NCBI chr 7:72,924,911...72,968,099
Ensembl chr 7:72,924,799...72,968,101
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 ISO (PMID:19640926) RGD PMID:19640926 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584
JBrowse link
multivesicular body, internal vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egfr epidermal growth factor receptor ISO (PMID:17714434) RGD PMID:17714434 NCBI chr14:99,919,485...100,104,136
Ensembl chr14:99,919,485...100,098,796
JBrowse link
Ragulator complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamtor1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 ISO
IBA
ISS
(PMID:20381137)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:20381137, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:166,991,474...166,997,045
Ensembl chr 1:166,991,474...166,997,045
JBrowse link
G Lamtor2 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 ISO
IBA
(PMID:20381137)
PMID:21873635
RGD PMID:20381137, PMID:21873635 RGD:13792537 NCBI chr 2:187,911,530...187,914,930
Ensembl chr 2:187,911,533...187,915,596
JBrowse link
G Lamtor3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 ISO
IBA
ISS
(PMID:20381137)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:20381137, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 2:243,160,821...243,173,057
Ensembl chr 2:243,160,917...243,173,048
JBrowse link
G Lamtor4 late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 ISO
IBA
(PMID:22980980)
PMID:21873635
RGD PMID:22980980, PMID:21873635 RGD:13792537 NCBI chr12:19,573,909...19,577,625
Ensembl chr12:19,573,909...19,577,624
JBrowse link
G Lamtor5 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 ISO
IBA
(PMID:22980980)
PMID:21873635
RGD PMID:22980980, PMID:21873635 RGD:13792537 NCBI chr 2:210,034,095...210,039,451
Ensembl chr 2:210,034,095...210,039,451
JBrowse link
G LOC100361543 RhoA activator C11orf59-like ISS
IBA
GO_REF:0000024
PMID:21873635
UniProt PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr  X:37,261,428...37,262,470
Ensembl chr 1:166,991,474...166,997,045
JBrowse link
G Slc38a9 solute carrier family 38, member 9 colocalizes_with ISS
ISO
GO_REF:0000024
(PMID:25561175), (PMID:25567906)
UniProt
RGD
PMID:25561175, PMID:25567906 GO_REF:0000024 NCBI chr 2:44,512,556...44,592,793
Ensembl chr 2:44,512,895...44,592,053
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20610
    cellular anatomical entity 20359
      endomembrane system 4005
        endosome 868
          late endosome 253
            Mon1-Ccz1 complex 4
            late endosome lumen + 0
            late endosome membrane + 100
            multivesicular body + 58
Path 2
Term Annotations click to browse term
  cellular_component 20610
    cellular anatomical entity 20359
      organelle 13271
        membrane-bounded organelle 11457
          vesicle 2065
            intracellular vesicle 1906
              cytoplasmic vesicle 1900
                endosome 868
                  late endosome 253
                    Mon1-Ccz1 complex 4
                    late endosome lumen + 0
                    late endosome membrane + 100
                    multivesicular body + 58
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.