Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:secondary lysosome
go back to main search page
Accession:GO:0005767 term browser browse the term
Definition:Vacuole formed by the fusion of a lysosome with an organelle (autosome) or with a primary phagosome.
Synonyms:xref: NIF_Subcellular:sao1549842807

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
secondary lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crhbp corticotropin releasing hormone binding protein ISO RGD PMID:10524337 RGD:5490549 NCBI chrNW_004936549:64,866...78,272
Ensembl chrNW_004936549:64,866...78,272 		JBrowse link
autolysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:11,955,334...11,967,338
Ensembl chrNW_004936501:11,955,184...11,967,436 		JBrowse link
G Fth1 ferritin heavy chain 1 located_in ISO (PMID:25327288) MGI PMID:25327288 NCBI chrNW_004936581:1,118,905...1,120,592 JBrowse link
G Ftl ferritin light chain located_in ISO (PMID:25327288) MGI PMID:25327288 NCBI chrNW_004936664:2,976,325...2,977,878
Ensembl chrNW_004936664:2,976,314...2,977,877 		JBrowse link
G Lamp1 lysosomal associated membrane protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936472:377,359...389,121
Ensembl chrNW_004936472:378,173...389,381 		JBrowse link
G Lamp2 lysosomal associated membrane protein 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:9,584,221...9,622,330
Ensembl chrNW_004936479:9,584,221...9,610,420 		JBrowse link
G LOC101972667 immunity related GTPase M located_in ISO (MGI:3656111|PMID:16888103) UniProt PMID:16888103 MGI:3656111 NCBI chrNW_004936504:4,055,091...4,056,089 JBrowse link
G Lrrk2 leucine rich repeat kinase 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936607:628,469...761,117
Ensembl chrNW_004936607:626,991...761,123 		JBrowse link
G Map1lc3a microtubule associated protein 1 light chain 3 alpha located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:6,104,748...6,106,348
Ensembl chrNW_004936561:6,104,742...6,106,699 		JBrowse link
G Ncoa4 nuclear receptor coactivator 4 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936728:376,915...402,539
Ensembl chrNW_004936728:376,852...402,539 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936517:4,009,938...4,145,518
Ensembl chrNW_004936517:4,033,247...4,145,422 		JBrowse link
G Plekhm1 pleckstrin homology and RUN domain containing M1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:1,685,902...1,732,361
Ensembl chrNW_004936541:1,685,923...1,732,420 		JBrowse link
G Sqstm1 sequestosome 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936739:943,080...955,296
Ensembl chrNW_004936739:938,745...955,263 		JBrowse link
autolysosome lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gaa alpha glucosidase is_active_in ISO (PMID:9668092) MGI PMID:9668092 NCBI chrNW_004936594:4,125,595...4,142,261 JBrowse link
phagolysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam8 ADAM metallopeptidase domain 8 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:19,389,925...19,403,577
Ensembl chrNW_004936486:19,391,324...19,402,332 		JBrowse link
G Pla2g5 phospholipase A2 group V located_in ISO (MGI:3639848|PMID:16407308) UniProt PMID:16407308 MGI:3639848 NCBI chrNW_004936474:6,131,915...6,150,810
Ensembl chrNW_004936474:6,131,884...6,150,819 		JBrowse link
phagolysosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamp1 lysosomal associated membrane protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936472:377,359...389,121
Ensembl chrNW_004936472:378,173...389,381 		JBrowse link
G Mpeg1 macrophage expressed 1 located_in
is_active_in		 IEA
ISO		 (PMID:31537793) Ensembl
UniProt		 PMID:31537793 GO_REF:0000107 NCBI chrNW_004936581:3,428,515...3,436,877
Ensembl chrNW_004936581:3,421,256...3,431,706 		JBrowse link
G Slc48a1 solute carrier family 48 member 1 located_in
is_active_in		 IEA
ISO		 (PMID:23395172) Ensembl
MGI		 PMID:23395172 GO_REF:0000107 NCBI chrNW_004936512:5,672,952...5,680,502
Ensembl chrNW_004936512:5,672,952...5,684,113 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 16767
    cellular anatomical entity 16677
      cytoplasm 10264
        vacuole 564
          lytic vacuole 462
            lysosome 462
              secondary lysosome 18
                autolysosome + 13
                phagolysosome + 5
Path 2
Term Annotations click to browse term
  cellular_component 16767
    cellular anatomical entity 16677
      organelle 11970
        membrane-bounded organelle 10943
          intracellular membrane-bounded organelle 10429
            vacuole 564
              lytic vacuole 462
                lysosome 462
                  secondary lysosome 18
                    autolysosome + 13
                    phagolysosome + 5
paths to the root