Welcome
{{ username}}
Message Center
{{ messageCount }} Messages
Go to Message Center
Watched Genes
{{$index + 1}}.
{{ watchedObject.symbol }} (RGD ID:{{watchedObject.rgdId}})
Modify Subscription
Unsubscribe
Watched Ontology Terms
{{$index + 1}}.
{{ watchedTerm.term }} ({{watchedTerm.accId}})
Modify Subscription
Unsubscribe
{{gene.symbol}}:
{{ gene.description }}
×
Save List to My RGD
Create Name:
Description:
You must be logged in to use this feature
{{ loginError }}
{{ watchLinkText }}
Select categories you would like to watch. Updates to this gene will be sent to {{ username }}
{{geneWatchAttr}}
Analyze
Gene
Strain
QTL
List
×
Gene Annotator (Functional Annotation)
unavailable
Gene Annotator (Annotation Distribution)
unavailable
Variant Visualizer (Genomic Variants)
unavailble
Variant Visualizer (Genomic Variants)
unavailable
Gene Annotator (Functional Annotation)
Gene Annotator (Annotation Distribution)
Variant Visualizer (Genomic Variants)
InterViewer (Protein-Protein Interactions)
unavailable
Gviewer (Genome Viewer)
unavailable
Variant Visualizer (Damaging Variants) unavailble
Variant Visualizer (Damaging Variants)
unavailable
InterViewer (Protein-Protein Interactions)
GViewer (Genome Viewer)
Variant Visualizer (Damaging Variants)
Gene Annotator (Annotation Comparison)
unavailable
OLGA (Gene List Generator)
unavailable
Gene Annotator (Annotation Comparison)
OLGA (Gene List Generator)
Excel (Download)
MOET (Multi-Ontology Enrichement)
unavailable
GOLF (Gene-Ortholog Location Finder)
unavailable
MOET (Multi-Ontology Enrichement)
GOLF (Gene-Ortholog Location Finder)
x
Send Message
x
Send us a Message
Your email
Message
Send
Submit Data
|
Help
|
Video Tutorials
|
News
|
Publications
|
Download
|
REST API
|
Citing RGD
|
Contact
Home
Search RGD
Grant Resources
Citing RGD
About Us
Contact Us
Data
Genes
Variants
Community Projects
QTLs
Strains
Markers
Genome Information
Ontologies
Cell Lines
References
Download
Submit Data
Analysis & Visualization
OntoMate (Literature Search)
JBrowse (Genome Browser)
Synteny Browser (VCMap)
Variant Visualizer
Multi-Ontology Enrichment (MOET)
Gene-Ortholog Location Finder (GOLF)
InterViewer (Protein-Protein Interactions)
PhenoMiner (Quatitative Phenotypes)
Gene Annotator
OLGA (Gene List Generator)
AllianceMine
GViewer (Genome Viewer)
Diseases
Aging & Age-Related Disease
Cancer & Neoplastic Disease
Cardiovascular Disease
Coronavirus Disease
Developmental Disease
Diabetes
Hematologic Disease
Immune & Inflammatory Disease
Infectious Disease
Liver Disease
Neurological Disease
Obesity & Metabolic Syndrome
Renal Disease
Respiratory Disease
Sensory Organ Disease
Phenotypes & Models
Find Models
Genetic Models
Autism Models
Rat PhenoMiner (Quantitative Phenotypes)
Chinchilla PhenoMiner
Expected Ranges (Quantitative Phenotype)
PhenoMiner Term Comparison
Hybrid Rat Diversity Panel
Phenotypes
Phenotypes in Other Animal Models
Animal Husbandry
Strain Medical Records
Phylogenetics
Strain Availability
Calendar
Rats 101
Submissions
Photo Archive
Pathways
Community
Rat Community Forum
Directory of Rat Laboratories
Video Tutorials
News
RGD Publications
RGD Presentations Archive
Nomenclature Guidelines
Resource Links
Laboratory Resources
Employment Resources
Advanced Search (OLGA)
ONTOLOGY REPORT - ANNOTATIONS
{{ watchLinkText }}
Term:
cytoplasm
go back to main search page
Accession:
GO:0005737
browse the term
Definition:
The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Synonyms:
xref:
Wikipedia:Cytoplasm
show annotations for term's descendants Sort by:
symbol
object name
position
reference
evidence
↑ asc
↓ desc
Rat (11892)
Mouse (12045)
Human (12855)
Chinchilla (8447)
Bonobo (10868)
Dog (10376)
Squirrel (10314)
Pig (10469)
Green Monkey (11123)
Naked Mole-rat (9845)
All
Genes (10376)
Your selection has 10376 annotated objects. The maximum number of objects that can be shown is 2000. The list is too large to display.
Select a more specific term using the term browser
Download the entire list for this term
Display annotations for this term only (exclude descendants)
Term paths to the root
one shortest
all shortest
one longest
all longest
one shortest and longest
all
Path 1
Term
Annotations
cellular_component
18216
cellular anatomical structure
17948
cytoplasm
10376
Atg1/ULK1 kinase complex
8
Atg12-Atg5-Atg16 complex
6
CUGBP1-eIF2 complex
0
Cvt complex
0
FHF complex
5
G-protein beta/gamma-Btk complex
0
G-protein beta/gamma-Raf-1 complex
0
G-protein beta/gamma-subunit complex
2
Golgi apparatus
+
1316
HSP90-CDC37 chaperone complex
3
Myo2p-Vac17p-Vac8p transport complex
0
N-terminal protein acetyltransferase complex
+
11
PAN complex
2
Par3-APC-KIF3A complex
0
RAVE complex
0
Rab-protein geranylgeranyltransferase complex
4
RasGAP-Fyn-Lyn-Yes complex
0
SCAR complex
10
SMN-Sm protein complex
+
18
SNARE complex
+
34
Scrib-APC complex
0
Scrib-APC-beta-catenin complex
3
Sid2-Mob1 complex
0
Ski complex
3
UFD1-NPL4 complex
2
VCP-NSFL1C complex
2
WASH complex
11
acetolactate synthase complex
0
acetyl-CoA carboxylase complex
+
0
acidocalcisome
+
0
alkyl hydroperoxide reductase complex
0
alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)
0
anaerobic ribonucleoside-triphosphate reductase complex
0
anammoxosome
0
anthranilate synthase complex
0
apical cytoplasm
+
6
basolateral cytoplasm
+
0
calpain complex
2
carbamoyl-phosphate synthase complex
0
cell cortex
+
288
cell plate
0
contractile muscle fiber
+
251
crystalloid
0
cysteine synthase complex
0
cytoplasmic U snRNP body
0
cytoplasmic cyclin-dependent protein kinase holoenzyme complex
2
cytoplasmic exosome (RNase complex)
+
6
cytoplasmic microtubule
+
116
cytoplasmic microtubule bundle
1
cytoplasmic origin of replication recognition complex
0
cytoplasmic region
+
296
cytoplasmic replication fork
+
0
cytoplasmic ribonucleoprotein granule
+
222
cytoplasmic ubiquitin ligase complex
+
9
cytoplasmic vesicle
+
1795
cytosol
+
3541
dense body
6
dynein axonemal particle
12
electron transfer flavoprotein complex
+
3
endoplasmic reticulum
+
1630
endoplasmic reticulum-Golgi intermediate compartment
+
76
endosperm protein body
0
eukaryotic translation elongation factor 1 complex
5
eukaryotic translation initiation factor 2 complex
5
eukaryotic translation initiation factor 2B complex
5
eukaryotic translation initiation factor 3 complex
+
17
eukaryotic translation initiation factor 4F complex
4
fusome
0
glutamate-cysteine ligase complex
2
glutamate-tRNA ligase complex
0
glycerol-3-phosphate dehydrogenase (FAD) complex
0
glycine reductase complex
0
glycine-tRNA ligase complex
0
glycogen granule
8
glycolate oxidase complex
0
goblet cell theca
0
histone mRNA stem-loop binding complex
2
homodimeric polyprenyl diphosphate synthase complex
0
homomeric SMAD protein complex
2
hydrogenosome
+
0
hydroxyisourate hydrolase complex
0
imidazoleglycerol-phosphate synthase complex
0
keratohyalin granule
2
membrane coat
+
100
methane-oxidizing organelle
0
methionyl glutamyl tRNA synthetase complex
0
methylosome
15
microbody
+
141
mitochondrial cloud
0
mitochondrion
+
1809
mitosome
0
mitotic spindle assembly checkpoint MAD1-MAD2 complex
2
monolayer-surrounded lipid storage body outer lipid monolayer
0
multi-eIF complex
2
nascent polypeptide-associated complex
3
neurofilament
13
ooplasm
6
pICln-Sm protein complex
9
paraferritin complex
1
perinuclear region of cytoplasm
+
742
periphagosomal region of cytoplasm
0
phagophore
0
phagophore assembly site
+
29
phenylalanine-tRNA ligase complex
2
phosphoenolpyruvate-dependent sugar phosphotransferase complex
0
phosphopantothenoylcysteine decarboxylase complex
0
phosphoribosylaminoimidazole carboxylase complex
0
phosphorylase kinase complex
5
phragmoplast
0
phragmosome
0
pirellulosome
0
plasma membrane-derived chromatophore
+
0
plasma membrane-derived photosystem I
0
plasma membrane-derived thylakoid photosystem II
0
plastid
+
0
pole plasm
+
16
polkadots
2
polyhydroxyalkanoate granule
0
polyketide synthase complex
+
0
preprophase band
0
procentriole
3
procentriole replication complex
6
proteasome storage granule
0
protein farnesyltransferase complex
2
protein phosphatase type 1 complex
+
14
pyruvate dehydrogenase (lipoamide) phosphatase complex
+
0
ribulose bisphosphate carboxylase complex
+
0
sarcoplasm
+
96
sarcosine oxidase complex
0
scintillon
0
serine-pyruvate aminotransferase complex
1
signal recognition particle
+
12
spectrosome
0
subsynaptic reticulum
0
sulfate adenylyltransferase complex (ATP)
0
translation initiation complex
+
1
translation initiation ternary complex
1
translation preinitiation complex
+
18
translation release factor complex
2
transnitrosylase complex
+
0
tricarboxylic acid cycle heteromeric enzyme complex
+
13
type I site-specific deoxyribonuclease complex
0
type II site-specific deoxyribonuclease complex
0
type III site-specific deoxyribonuclease complex
0
type IV site-specific deoxyribonuclease complex
0
urease complex
0
vacuole
+
572
yolk
+
1
Path 2
Term
Annotations
cellular_component
18216
cellular anatomical structure
17948
intracellular anatomical structure
13558
cytoplasm
10376
Atg1/ULK1 kinase complex
8
Atg12-Atg5-Atg16 complex
6
CUGBP1-eIF2 complex
0
Cvt complex
0
FHF complex
5
G-protein beta/gamma-Btk complex
0
G-protein beta/gamma-Raf-1 complex
0
G-protein beta/gamma-subunit complex
2
Golgi apparatus
+
1316
HSP90-CDC37 chaperone complex
3
Myo2p-Vac17p-Vac8p transport complex
0
N-terminal protein acetyltransferase complex
+
11
PAN complex
2
Par3-APC-KIF3A complex
0
RAVE complex
0
Rab-protein geranylgeranyltransferase complex
4
RasGAP-Fyn-Lyn-Yes complex
0
SCAR complex
10
SMN-Sm protein complex
+
18
SNARE complex
+
34
Scrib-APC complex
0
Scrib-APC-beta-catenin complex
3
Sid2-Mob1 complex
0
Ski complex
3
UFD1-NPL4 complex
2
VCP-NSFL1C complex
2
WASH complex
11
acetolactate synthase complex
0
acetyl-CoA carboxylase complex
+
0
acidocalcisome
+
0
alkyl hydroperoxide reductase complex
0
alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)
0
anaerobic ribonucleoside-triphosphate reductase complex
0
anammoxosome
0
anthranilate synthase complex
0
apical cytoplasm
+
6
basolateral cytoplasm
+
0
calpain complex
2
carbamoyl-phosphate synthase complex
0
cell cortex
+
288
cell plate
0
contractile muscle fiber
+
251
crystalloid
0
cysteine synthase complex
0
cytoplasmic U snRNP body
0
cytoplasmic cyclin-dependent protein kinase holoenzyme complex
2
cytoplasmic exosome (RNase complex)
+
6
cytoplasmic microtubule
+
116
cytoplasmic microtubule bundle
1
cytoplasmic origin of replication recognition complex
0
cytoplasmic region
+
296
cytoplasmic replication fork
+
0
cytoplasmic ribonucleoprotein granule
+
222
cytoplasmic ubiquitin ligase complex
+
9
cytoplasmic vesicle
+
1795
cytosol
+
3541
dense body
6
dynein axonemal particle
12
electron transfer flavoprotein complex
+
3
endoplasmic reticulum
+
1630
endoplasmic reticulum-Golgi intermediate compartment
+
76
endosperm protein body
0
eukaryotic translation elongation factor 1 complex
5
eukaryotic translation initiation factor 2 complex
5
eukaryotic translation initiation factor 2B complex
5
eukaryotic translation initiation factor 3 complex
+
17
eukaryotic translation initiation factor 4F complex
4
fusome
0
glutamate-cysteine ligase complex
2
glutamate-tRNA ligase complex
0
glycerol-3-phosphate dehydrogenase (FAD) complex
0
glycine reductase complex
0
glycine-tRNA ligase complex
0
glycogen granule
8
glycolate oxidase complex
0
goblet cell theca
0
histone mRNA stem-loop binding complex
2
homodimeric polyprenyl diphosphate synthase complex
0
homomeric SMAD protein complex
2
hydrogenosome
+
0
hydroxyisourate hydrolase complex
0
imidazoleglycerol-phosphate synthase complex
0
keratohyalin granule
2
membrane coat
+
100
methane-oxidizing organelle
0
methionyl glutamyl tRNA synthetase complex
0
methylosome
15
microbody
+
141
mitochondrial cloud
0
mitochondrion
+
1809
mitosome
0
mitotic spindle assembly checkpoint MAD1-MAD2 complex
2
monolayer-surrounded lipid storage body outer lipid monolayer
0
multi-eIF complex
2
nascent polypeptide-associated complex
3
neurofilament
13
ooplasm
6
pICln-Sm protein complex
9
paraferritin complex
1
perinuclear region of cytoplasm
+
742
periphagosomal region of cytoplasm
0
phagophore
0
phagophore assembly site
+
29
phenylalanine-tRNA ligase complex
2
phosphoenolpyruvate-dependent sugar phosphotransferase complex
0
phosphopantothenoylcysteine decarboxylase complex
0
phosphoribosylaminoimidazole carboxylase complex
0
phosphorylase kinase complex
5
phragmoplast
0
phragmosome
0
pirellulosome
0
plasma membrane-derived chromatophore
+
0
plasma membrane-derived photosystem I
0
plasma membrane-derived thylakoid photosystem II
0
plastid
+
0
pole plasm
+
16
polkadots
2
polyhydroxyalkanoate granule
0
polyketide synthase complex
+
0
preprophase band
0
procentriole
3
procentriole replication complex
6
proteasome storage granule
0
protein farnesyltransferase complex
2
protein phosphatase type 1 complex
+
14
pyruvate dehydrogenase (lipoamide) phosphatase complex
+
0
ribulose bisphosphate carboxylase complex
+
0
sarcoplasm
+
96
sarcosine oxidase complex
0
scintillon
0
serine-pyruvate aminotransferase complex
1
signal recognition particle
+
12
spectrosome
0
subsynaptic reticulum
0
sulfate adenylyltransferase complex (ATP)
0
translation initiation complex
+
1
translation initiation ternary complex
1
translation preinitiation complex
+
18
translation release factor complex
2
transnitrosylase complex
+
0
tricarboxylic acid cycle heteromeric enzyme complex
+
13
type I site-specific deoxyribonuclease complex
0
type II site-specific deoxyribonuclease complex
0
type III site-specific deoxyribonuclease complex
0
type IV site-specific deoxyribonuclease complex
0
urease complex
0
vacuole
+
572
yolk
+
1