perichromatin fibrils - Ontology Report - Rat Genome Database

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS	{{ watchLinkText }}

Term:	perichromatin fibrils	go back to main search page
Accession:	GO:0005726	browse the term
Definition:	Structures of variable diameter visible in the nucleoplasm by electron microscopy, mainly observed near the border of condensed chromatin. The fibrils are enriched in RNA, and are believed to be sites of pre-mRNA splicing and polyadenylylation representing the in situ form of nascent transcripts.

show annotations for term's descendants Sort by:
Rat (8) Mouse (8) Human (8) Chinchilla (8) Bonobo (8) Dog (8) Squirrel (8) Pig (8) Green Monkey (8) Naked Mole-rat (8) All
Genes (8)

perichromatin fibrils

term browser

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

G

clock circadian regulator

RGD

NCBI chr14:31,908,542...31,992,673
Ensembl chr14:31,908,566...31,990,400

G

cleavage and polyadenylation specific factor 6

located_in

(PMID:17267687)

NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122

G

DExH-box helicase 9

located_in

(PMID:10198287)

NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069

G

nuclear FMR1 interacting protein 1

located_in

(PMID:12941608)

NCBI chr15:51,429,518...51,460,308
Ensembl chr15:51,429,549...51,460,310

G

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4

located_in

(MGI:1339222|PMID:10318760)

NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975

G

serine and arginine rich splicing factor 2

MMO:0000663

RGD

NCBI chr10:102,052,158...102,055,365
Ensembl chr10:102,052,314...102,055,338

G

TAR DNA binding protein

RGD

NCBI chr 5:159,050,518...159,062,218
Ensembl chr 5:159,051,799...159,062,055

G

tripartite motif-containing 24

located_in

(MGI:1339222|PMID:10318760)

NCBI chr 4:66,664,864...66,717,244
Ensembl chr 4:66,566,686...66,717,241

Term paths to the root

Path 1
Term	Annotations
cellular_component	20534
cellular anatomical entity	20291
perichromatin fibrils	8
Path 2
Term	Annotations
cellular_component	20534
cellular anatomical entity	20291
intracellular anatomical structure	14784
intracellular organelle	13141
intracellular membrane-bounded organelle	11565
nucleus	7215
nuclear lumen	4015
nuclear chromosome	248
perichromatin fibrils	8

paths to the root