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ONTOLOGY REPORT - ANNOTATIONS


Term:perichromatin fibrils
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Accession:GO:0005726 term browser browse the term
Definition:Structures of variable diameter visible in the nucleoplasm by electron microscopy, mainly observed near the border of condensed chromatin. The fibrils are enriched in RNA, and are believed to be sites of pre-mRNA splicing and polyadenylylation representing the in situ form of nascent transcripts.



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perichromatin fibrils term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clock clock circadian regulator IDA RGD PMID:16208722 RGD:10401943 NCBI chr14:31,908,542...31,992,673
Ensembl chr14:31,908,566...31,990,400
JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 located_in ISO (PMID:17267687) RGD PMID:17267687 NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122
JBrowse link
G Dhx9 DExH-box helicase 9 located_in ISO (PMID:10198287) RGD PMID:10198287 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069
JBrowse link
G Nufip1 nuclear FMR1 interacting protein 1 located_in ISO (PMID:12941608) RGD PMID:12941608 NCBI chr15:51,429,518...51,460,308
Ensembl chr15:51,429,549...51,460,310
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 located_in ISO (MGI:1339222|PMID:10318760) RGD PMID:10318760 MGI:1339222 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
G Srsf2 serine and arginine rich splicing factor 2 IDA MMO:0000663 RGD PMID:19321046 RGD:150429709 NCBI chr10:102,052,158...102,055,365
Ensembl chr10:102,052,314...102,055,338
JBrowse link
G Tardbp TAR DNA binding protein IDA RGD PMID:19539030 RGD:5687141 NCBI chr 5:159,050,518...159,062,218
Ensembl chr 5:159,051,799...159,062,055
JBrowse link
G Trim24 tripartite motif-containing 24 located_in ISO (MGI:1339222|PMID:10318760) RGD PMID:10318760 MGI:1339222 NCBI chr 4:66,664,864...66,717,244
Ensembl chr 4:66,566,686...66,717,241
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19969
    cellular anatomical entity 19676
      perichromatin fibrils 8
Path 2
Term Annotations click to browse term
  cellular_component 19969
    cellular anatomical entity 19676
      intracellular anatomical structure 14364
        intracellular organelle 12730
          intracellular membrane-bounded organelle 11218
            nucleus 7051
              nuclear lumen 3941
                nuclear chromosome 245
                  perichromatin fibrils 8
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