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ONTOLOGY REPORT - ANNOTATIONS


Term:pericentric heterochromatin
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Accession:GO:0005721 term browser browse the term
Definition:Heterochromatin that is located adjacent to the CENP-A rich centromere 'central core' and characterized by methylated H3 histone at lysine 9 (H3K9me2/H3K9me3).
Synonyms:exact_synonym: centric heterochromatin;   centromeric heterochromatin
 narrow_synonym: nuclear centric heterochromatin;   nuclear cluster;   nuclear pericentric heterochromatin
 related_synonym: chromosome, centric outer repeat region;   chromosome, centromeric inner repeat region;   chromosome, centromeric outer repeat region
 alt_id: GO:0002137;   GO:0031618;   GO:0034507;   GO:0062199



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pericentric heterochromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atrx ATRX, chromatin remodeler located_in IEA
ISO
GO_REF:0000107
(PMID:15242786), (PMID:20110566), (PMID:26159997)
Ensembl
RGD
PMID:15242786 PMID:20110566 PMID:26159997 GO_REF:0000107 NCBI chr  X:70,850,981...70,997,330
Ensembl chr  X:70,850,981...70,997,330
JBrowse link
G Baz1a bromodomain adjacent to zinc finger domain, 1A part_of
located_in
ISO (PMID:12434153) RGD PMID:12434153 NCBI chr 6:72,389,701...72,512,516
Ensembl chr 6:72,389,703...72,512,459
JBrowse link
G Baz1b bromodomain adjacent to zinc finger domain, 1B located_in ISO (PMID:11980720) RGD PMID:11980720 NCBI chr12:21,431,985...21,489,956
Ensembl chr12:21,431,985...21,490,426
JBrowse link
G Cbx1 chromobox 1 located_in ISO
IBA
(PMID:11980720)
GO_REF:0000033
RGD
GO_Central
PMID:11980720 GO_REF:0000033 NCBI chr10:81,770,307...81,789,981
Ensembl chr10:81,770,342...81,791,096
JBrowse link
G Cbx3 chromobox 3 located_in ISO
IBA
(PMID:16287503)
GO_REF:0000033
RGD
GO_Central
PMID:16287503 GO_REF:0000033 NCBI chr 4:80,545,450...80,559,284
Ensembl chr 4:80,546,010...80,559,283
JBrowse link
G Cbx5 chromobox 5 located_in ISO
IBA
(PMID:20110566)
GO_REF:0000033
RGD
GO_Central
PMID:20110566 GO_REF:0000033 NCBI chr 7:134,333,165...134,376,102
Ensembl chr 7:134,331,335...134,375,022
JBrowse link
G Cenpa centromere protein A located_in ISO (PMID:15242786) RGD PMID:15242786 NCBI chr 6:25,700,142...25,711,767
Ensembl chr 6:25,700,142...25,711,675
JBrowse link
G Cenpb centromere protein B located_in ISO (PMID:15242786) RGD PMID:15242786 NCBI chr 3:118,396,987...118,399,780
Ensembl chr 3:118,388,546...118,400,470
JBrowse link
G Cenpc centromere protein C located_in ISO (PMID:21529714)
(PMID:15242786)
RGD PMID:15242786 PMID:21529714 NCBI chr14:21,988,067...22,046,732
Ensembl chr14:21,988,144...22,055,476
JBrowse link
G Chrac1 chromatin accessibility complex subunit 1 located_in ISO (PMID:12434153) RGD PMID:12434153 NCBI chr 7:105,013,047...105,016,435
Ensembl chr 7:105,013,015...105,017,136
JBrowse link
G Dnmt1 DNA methyltransferase 1 located_in IEA
ISO
GO_REF:0000107
(PMID:17576694)
Ensembl
RGD
PMID:17576694 GO_REF:0000107 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659
JBrowse link
G Esco2 establishment of sister chromatid cohesion N-acetyltransferase 2 located_in ISO (PMID:22101327) RGD PMID:22101327 NCBI chr15:40,034,566...40,052,295
Ensembl chr15:40,034,568...40,055,306
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit located_in ISO (PMID:27892467) RGD PMID:27892467 NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362
JBrowse link
G Flywch1 FLYWCH-type zinc finger 1 located_in ISO (PMID:34408139) RGD PMID:34408139 NCBI chr10:12,774,644...12,794,373
Ensembl chr10:12,774,653...12,794,267
JBrowse link
G Hells helicase, lymphoid specific located_in ISO
IBA
(PMID:14612388)
GO_REF:0000033
RGD
GO_Central
PMID:14612388 GO_REF:0000033 NCBI chr 1:236,701,704...236,748,239
Ensembl chr 1:236,701,758...236,746,844
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 located_in ISO (PMID:21548011)
(PMID:15767674)
RGD PMID:15767674 PMID:21548011 NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416
JBrowse link
G Incenp inner centromere protein located_in ISO (PMID:9864353) RGD PMID:9864353 NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265
JBrowse link
G Kdm4a lysine demethylase 4A located_in ISO (PMID:16738407) RGD PMID:16738407 NCBI chr 5:131,672,754...131,719,534
Ensembl chr 5:131,672,754...131,719,501
JBrowse link
G Kdm4b lysine demethylase 4B located_in ISO (PMID:16738407) RGD PMID:16738407 NCBI chr 9:1,158,737...1,237,233
Ensembl chr 9:1,158,752...1,236,543
JBrowse link
G Kdm4c lysine demethylase 4C located_in ISO (PMID:16738407) RGD PMID:16738407 NCBI chr 5:88,100,710...88,306,821
Ensembl chr 5:88,100,733...88,306,818
JBrowse link
G Kdm4d lysine demethylase 4D located_in ISO (PMID:16738407) RGD PMID:16738407 NCBI chr 8:11,279,756...11,304,920
Ensembl chr 8:11,268,859...11,305,290
JBrowse link
G Kmt5c lysine methyltransferase 5C located_in ISO (PMID:19486527) RGD PMID:19486527 NCBI chr 1:69,099,531...69,107,145
Ensembl chr 1:69,099,539...69,107,145
JBrowse link
G Lrwd1 leucine-rich repeats and WD repeat domain containing 1 located_in ISO (PMID:20932478) RGD PMID:20932478 NCBI chr12:20,530,035...20,543,078
Ensembl chr12:20,530,012...20,549,536
JBrowse link
G Macroh2a1 macroH2A.1 histone located_in ISO (PMID:19486527) RGD PMID:19486527 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072
JBrowse link
G Ncapd3 non-SMC condensin II complex, subunit D3 located_in ISO (PMID:20551165) RGD PMID:20551165 NCBI chr 8:25,437,067...25,506,375
Ensembl chr 8:25,437,123...25,506,373
JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit located_in ISO (PMID:12434153) RGD PMID:12434153 NCBI chr 5:75,973,941...75,977,175
Ensembl chr 5:75,974,717...75,977,231
Ensembl chr 7:75,974,717...75,977,231
JBrowse link
G Sirt6 sirtuin 6 is_active_in ISO (PMID:27043296) RGD PMID:27043296 NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914
JBrowse link
G Smarca5 SNF2 related chromatin remodeling ATPase 5 part_of
located_in
ISO (PMID:12434153)
(PMID:11980720), (PMID:12434153)
RGD PMID:11980720 PMID:12434153 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594
JBrowse link
G Snai1 snail family transcriptional repressor 1 located_in ISO (PMID:24239292) RGD PMID:24239292 NCBI chr 3:156,248,479...156,252,969
Ensembl chr 3:156,248,485...156,252,969
JBrowse link
G Uhrf2 ubiquitin like with PHD and ring finger domains 2 located_in ISO (PMID:27129234) RGD PMID:27129234 NCBI chr 1:227,814,639...227,877,907
Ensembl chr 1:227,814,963...227,877,904
JBrowse link
G Zfp618 zinc finger protein 618 located_in ISO (PMID:27129234) RGD PMID:27129234 NCBI chr 5:76,398,514...76,564,837
Ensembl chr 5:76,398,366...76,564,834
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20824
    cellular anatomical structure 20625
      chromosomal region 334
        chromosome, centromeric region 233
          pericentric heterochromatin 31
            alpha-heterochromatin 0
            beta-heterochromatin 0
Path 2
Term Annotations click to browse term
  cellular_component 20824
    cellular anatomical structure 20625
      organelle 13967
        intracellular organelle 13561
          intracellular membraneless organelle 5265
            chromosome 1385
              chromatin 818
                heterochromatin 99
                  pericentric heterochromatin 31
                    alpha-heterochromatin 0
                    beta-heterochromatin 0
paths to the root