ONTOLOGY REPORT - ANNOTATIONS
Term: pericentric heterochromatin
Accession: GO:0005721
browse the term
Definition: Heterochromatin that is located adjacent to the CENP-A rich centromere 'central core' and characterized by methylated H3 histone at lysine 9 (H3K9me2/H3K9me3).
Synonyms: exact_synonym: centric heterochromatin; centromeric heterochromatin
narrow_synonym: nuclear centric heterochromatin; nuclear cluster; nuclear pericentric heterochromatin
related_synonym: chromosome, centric outer repeat region; chromosome, centromeric inner repeat region; chromosome, centromeric outer repeat region
alt_id: GO:0002137; GO:0031618; GO:0034507; GO:0062199
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Atrx
ATRX, chromatin remodeler
located_in
IEA ISO
GO_REF:0000107 (PMID:15242786), (PMID:20110566), (PMID:26159997)
Ensembl RGD
PMID:15242786 PMID:20110566 PMID:26159997
GO_REF:0000107
NCBI chr X:70,850,981...70,997,330
Ensembl chr X:70,850,981...70,997,330
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Baz1a
bromodomain adjacent to zinc finger domain, 1A
part_of located_in
ISO
(PMID:12434153)
RGD
PMID:12434153
NCBI chr 6:72,389,701...72,512,516
Ensembl chr 6:72,389,703...72,512,459
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Baz1b
bromodomain adjacent to zinc finger domain, 1B
located_in
ISO
(PMID:11980720)
RGD
PMID:11980720
NCBI chr12:21,431,985...21,489,956
Ensembl chr12:21,431,985...21,490,426
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Cbx1
chromobox 1
located_in
ISO IBA
(PMID:11980720) GO_REF:0000033
RGD GO_Central
PMID:11980720
GO_REF:0000033
NCBI chr10:81,770,307...81,789,981
Ensembl chr10:81,770,342...81,791,096
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Cbx3
chromobox 3
located_in
ISO IBA
(PMID:16287503) GO_REF:0000033
RGD GO_Central
PMID:16287503
GO_REF:0000033
NCBI chr 4:80,545,450...80,559,284
Ensembl chr 4:80,546,010...80,559,283
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Cbx5
chromobox 5
located_in
ISO IBA
(PMID:20110566) GO_REF:0000033
RGD GO_Central
PMID:20110566
GO_REF:0000033
NCBI chr 7:134,333,165...134,376,102
Ensembl chr 7:134,331,335...134,375,022
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Cenpa
centromere protein A
located_in
ISO
(PMID:15242786)
RGD
PMID:15242786
NCBI chr 6:25,700,142...25,711,767
Ensembl chr 6:25,700,142...25,711,675
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Cenpb
centromere protein B
located_in
ISO
(PMID:15242786)
RGD
PMID:15242786
NCBI chr 3:118,396,987...118,399,780
Ensembl chr 3:118,388,546...118,400,470
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Cenpc
centromere protein C
located_in
ISO
(PMID:21529714) (PMID:15242786)
RGD
PMID:15242786 PMID:21529714
NCBI chr14:21,988,067...22,046,732
Ensembl chr14:21,988,144...22,055,476
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Chrac1
chromatin accessibility complex subunit 1
located_in
ISO
(PMID:12434153)
RGD
PMID:12434153
NCBI chr 7:105,013,047...105,016,435
Ensembl chr 7:105,013,015...105,017,136
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Dnmt1
DNA methyltransferase 1
located_in
IEA ISO
GO_REF:0000107 (PMID:17576694)
Ensembl RGD
PMID:17576694
GO_REF:0000107
NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659
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Esco2
establishment of sister chromatid cohesion N-acetyltransferase 2
located_in
ISO
(PMID:22101327)
RGD
PMID:22101327
NCBI chr15:40,034,566...40,052,295
Ensembl chr15:40,034,568...40,055,306
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Ezh2
enhancer of zeste 2 polycomb repressive complex 2 subunit
located_in
ISO
(PMID:27892467)
RGD
PMID:27892467
NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362
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Flywch1
FLYWCH-type zinc finger 1
located_in
ISO
(PMID:34408139)
RGD
PMID:34408139
NCBI chr10:12,774,644...12,794,373
Ensembl chr10:12,774,653...12,794,267
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Hells
helicase, lymphoid specific
located_in
ISO IBA
(PMID:14612388) GO_REF:0000033
RGD GO_Central
PMID:14612388
GO_REF:0000033
NCBI chr 1:236,701,704...236,748,239
Ensembl chr 1:236,701,758...236,746,844
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Ikzf1
IKAROS family zinc finger 1
located_in
ISO
(PMID:21548011) (PMID:15767674)
RGD
PMID:15767674 PMID:21548011
NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416
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Incenp
inner centromere protein
located_in
ISO
(PMID:9864353)
RGD
PMID:9864353
NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265
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Kdm4a
lysine demethylase 4A
located_in
ISO
(PMID:16738407)
RGD
PMID:16738407
NCBI chr 5:131,672,754...131,719,534
Ensembl chr 5:131,672,754...131,719,501
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Kdm4b
lysine demethylase 4B
located_in
ISO
(PMID:16738407)
RGD
PMID:16738407
NCBI chr 9:1,158,737...1,237,233
Ensembl chr 9:1,158,752...1,236,543
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Kdm4c
lysine demethylase 4C
located_in
ISO
(PMID:16738407)
RGD
PMID:16738407
NCBI chr 5:88,100,710...88,306,821
Ensembl chr 5:88,100,733...88,306,818
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Kdm4d
lysine demethylase 4D
located_in
ISO
(PMID:16738407)
RGD
PMID:16738407
NCBI chr 8:11,279,756...11,304,920
Ensembl chr 8:11,268,859...11,305,290
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Kmt5c
lysine methyltransferase 5C
located_in
ISO
(PMID:19486527)
RGD
PMID:19486527
NCBI chr 1:69,099,531...69,107,145
Ensembl chr 1:69,099,539...69,107,145
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Lrwd1
leucine-rich repeats and WD repeat domain containing 1
located_in
ISO
(PMID:20932478)
RGD
PMID:20932478
NCBI chr12:20,530,035...20,543,078
Ensembl chr12:20,530,012...20,549,536
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Macroh2a1
macroH2A.1 histone
located_in
ISO
(PMID:19486527)
RGD
PMID:19486527
NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072
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Ncapd3
non-SMC condensin II complex, subunit D3
located_in
ISO
(PMID:20551165)
RGD
PMID:20551165
NCBI chr 8:25,437,067...25,506,375
Ensembl chr 8:25,437,123...25,506,373
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Pole3
DNA polymerase epsilon 3, accessory subunit
located_in
ISO
(PMID:12434153)
RGD
PMID:12434153
NCBI chr 5:75,973,941...75,977,175
Ensembl chr 5:75,974,717...75,977,231 Ensembl chr 7:75,974,717...75,977,231
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Sirt6
sirtuin 6
is_active_in
ISO
(PMID:27043296)
RGD
PMID:27043296
NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914
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Smarca5
SNF2 related chromatin remodeling ATPase 5
part_of located_in
ISO
(PMID:12434153) (PMID:11980720), (PMID:12434153)
RGD
PMID:11980720 PMID:12434153
NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594
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Snai1
snail family transcriptional repressor 1
located_in
ISO
(PMID:24239292)
RGD
PMID:24239292
NCBI chr 3:156,248,479...156,252,969
Ensembl chr 3:156,248,485...156,252,969
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Uhrf2
ubiquitin like with PHD and ring finger domains 2
located_in
ISO
(PMID:27129234)
RGD
PMID:27129234
NCBI chr 1:227,814,639...227,877,907
Ensembl chr 1:227,814,963...227,877,904
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Zfp618
zinc finger protein 618
located_in
ISO
(PMID:27129234)
RGD
PMID:27129234
NCBI chr 5:76,398,514...76,564,837
Ensembl chr 5:76,398,366...76,564,834
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