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ONTOLOGY REPORT - ANNOTATIONS

Term:transcription factor TFIID complex
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Accession:GO:0005669 term browser browse the term
Definition:A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters.


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transcription factor TFIID complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 part_of IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 4:19,319,815...19,433,492
Ensembl chr 4:19,319,810...19,433,488 		JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit part_of IEA Ensembl GO_REF:0000107 NCBI chr 6:51,734,318...51,757,508
Ensembl chr 6:51,734,320...51,757,553 		JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit part_of IEA Ensembl GO_REF:0000107 NCBI chr15:25,189,644...25,224,381
Ensembl chr15:25,189,663...25,228,066 		JBrowse link
G GTF2A1 general transcription factor IIA subunit 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 7:103,963,863...104,009,318
Ensembl chr 7:103,963,248...104,009,226 		JBrowse link
G GTF2A2 general transcription factor IIA subunit 2 part_of ISO (PMID:27193682) UniProt PMID:27193682 NCBI chr 1:112,371,276...112,399,541
Ensembl chr 1:112,390,594...112,402,265 		JBrowse link
G GTF2B general transcription factor IIB part_of IEA Ensembl GO_REF:0000107 NCBI chr 4:127,522,802...127,559,605
Ensembl chr 4:127,522,870...127,561,135 		JBrowse link
G GTF2E1 general transcription factor IIE subunit 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr13:139,565,891...139,609,483
Ensembl chr13:139,565,908...139,609,447 		JBrowse link
G GTF2E2 general transcription factor IIE subunit 2 part_of IEA Ensembl GO_REF:0000107 NCBI chr15:54,444,480...54,525,566
Ensembl chr15:54,444,470...54,531,213 		JBrowse link
G GTF2F1 general transcription factor IIF subunit 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 2:72,687,612...72,698,274
Ensembl chr 2:72,687,790...72,698,270 		JBrowse link
G GTF2H2 general transcription factor IIH subunit 2 part_of ISO (PMID:27193682) UniProt PMID:27193682 NCBI chr16:47,658,015...47,700,926 JBrowse link
G GTF2H3 general transcription factor IIH subunit 3 part_of IEA Ensembl GO_REF:0000107 NCBI chr14:29,335,715...29,355,465
Ensembl chr14:29,335,582...29,355,435 		JBrowse link
G GTF2H4 general transcription factor IIH subunit 4 part_of IEA Ensembl GO_REF:0000107 NCBI chr 7:23,398,414...23,404,268
Ensembl chr 7:23,398,445...23,404,524 		JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 part_of IEA Ensembl GO_REF:0000107 NCBI chr 1:8,928,280...8,935,030
Ensembl chr 1:8,917,240...8,934,983 		JBrowse link
G SUPT3H SPT3 homolog, SAGA and STAGA complex component part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 7:39,763,303...40,161,123
Ensembl chr 7:39,751,927...40,161,103 		JBrowse link
G TAF1 TATA-box binding protein associated factor 1 located_in
part_of		 ISO
IEA
IBA		 (PMID:23332750) ComplexPortal
UniProt
InterPro
TreeGrafter
GO_Central		 PMID:23332750 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000118 NCBI chr  X:57,382,211...57,466,700
Ensembl chr  X:57,382,354...57,466,697 		JBrowse link
G TAF10 TATA-box binding protein associated factor 10 located_in
part_of		 ISO
IEA
IBA		 (PMID:23332750) ComplexPortal
Ensembl
TreeGrafter
GO_Central		 PMID:23332750 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:3,144,262...3,145,702
Ensembl chr 9:3,144,277...3,145,720 		JBrowse link
G TAF11 TATA-box binding protein associated factor 11 located_in
part_of		 ISO
IEA
IBA		 (PMID:23332750) ComplexPortal
Ensembl
InterPro
GO_Central
TreeGrafter		 PMID:23332750 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:30,799,992...30,811,771
Ensembl chr 7:30,799,965...30,811,768 		JBrowse link
G TAF12 TATA-box binding protein associated factor 12 located_in
part_of		 ISO
IEA
IBA		 (PMID:23332750) ComplexPortal
Ensembl
InterPro
GO_Central
TreeGrafter		 PMID:23332750 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:85,618,679...85,643,087
Ensembl chr 6:85,618,691...85,643,075 		JBrowse link
G TAF13 TATA-box binding protein associated factor 13 located_in
part_of		 ISO
IEA
IBA		 (PMID:23332750) ComplexPortal
Ensembl
GO_Central
TreeGrafter		 PMID:23332750 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:110,980,816...110,991,941
Ensembl chr 4:110,971,573...110,992,018 		JBrowse link
G TAF2 TATA-box binding protein associated factor 2 located_in
part_of		 ISO
IEA
IBA		 (PMID:23332750) ComplexPortal
InterPro
Ensembl
TreeGrafter
GO_Central		 PMID:23332750 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:19,180,215...19,267,416
Ensembl chr 4:19,180,320...19,267,071 		JBrowse link
G TAF3 TATA-box binding protein associated factor 3 located_in
part_of		 ISO
IEA
IBA		 (PMID:23332750) ComplexPortal
Ensembl
GO_Central
TreeGrafter		 PMID:23332750 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr10:63,422,184...63,576,400
Ensembl chr10:63,422,204...63,576,378 		JBrowse link
G TAF4 TATA-box binding protein associated factor 4 located_in
part_of		 ISO
IEA
IBA		 (PMID:23332750) ComplexPortal
InterPro
Ensembl
GO_Central		 PMID:23332750 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr17:61,465,820...61,529,963
Ensembl chr17:61,465,822...61,529,890 		JBrowse link
G TAF4B TATA-box binding protein associated factor 4b part_of IEA
IBA		 InterPro
Ensembl
GO_Central
TreeGrafter		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:110,855,636...110,972,798
Ensembl chr 6:110,855,636...110,971,994 		JBrowse link
G TAF5 TATA-box binding protein associated factor 5 located_in
part_of		 ISO
IEA
IBA		 (PMID:23332750) ComplexPortal
Ensembl
GO_Central
TreeGrafter		 PMID:23332750 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr14:114,304,563...114,321,624
Ensembl chr14:114,304,557...114,321,626 		JBrowse link
G TAF6 TATA-box binding protein associated factor 6 located_in
part_of		 ISO
IEA
IBA		 (PMID:23332750) ComplexPortal
InterPro
Ensembl
GO_Central
TreeGrafter		 PMID:23332750 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:8,017,675...8,026,982
Ensembl chr 3:8,017,675...8,026,888 		JBrowse link
G TAF6L TATA-box binding protein associated factor 6 like part_of IEA InterPro GO_REF:0000002 NCBI chr 2:8,983,823...8,999,990
Ensembl chr 2:8,985,628...9,000,121 		JBrowse link
G TAF7 TATA-box binding protein associated factor 7 located_in
part_of		 ISO
IEA
IBA		 (PMID:23332750) ComplexPortal
Ensembl
InterPro
TreeGrafter
GO_Central		 PMID:23332750 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:142,949,271...142,952,611
Ensembl chr 2:142,947,343...142,952,505 		JBrowse link
G TAF7L TATA-box binding protein associated factor 7 like part_of IEA
IBA		 InterPro
GO_Central
TreeGrafter		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr  X:82,930,258...82,951,065
Ensembl chr  X:82,930,266...82,951,224 		JBrowse link
G TAF8 TATA-box binding protein associated factor 8 located_in
part_of		 ISO
IEA		 (PMID:23332750) ComplexPortal
Ensembl
InterPro
TreeGrafter		 PMID:23332750 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:37,179,270...37,209,588
Ensembl chr 7:37,180,828...37,204,690 		JBrowse link
G TAF9 TATA-box binding protein associated factor 9 located_in
part_of		 ISO
IEA
IBA		 (PMID:23332750) ComplexPortal
Ensembl
TreeGrafter
GO_Central		 PMID:23332750 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr16:47,494,841...47,499,568
Ensembl chr16:47,490,027...47,495,880 		JBrowse link
G TAF9B TATA-box binding protein associated factor 9b part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:62,214,331...62,228,782
Ensembl chr  X:62,214,338...62,229,021 		JBrowse link
G TBP TATA-box binding protein part_of
located_in		 ISO (PMID:14580349), (PMID:27007846), (PMID:27193682), (PMID:29111974), (PMID:7729427)
(PMID:23332750)
(PMID:28893950)		 RGD
UniProt
ComplexPortal
MGI		 PMID:7729427 PMID:7980586 PMID:14580349 PMID:23332750 PMID:27007846 More... RGD:2306552 NCBI chr 1:5,669...23,675 JBrowse link
G TCEA1 transcription elongation factor A1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 4:77,109,555...77,138,324
Ensembl chr 4:77,109,594...77,138,320 		JBrowse link
G WDR5 WD repeat domain 5 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 1:273,560,274...273,577,827
Ensembl chr 1:273,560,283...273,578,063 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18685
    cellular anatomical entity 18463
      nucleoplasm 3447
        RNA polymerase II, holoenzyme 69
          transcription factor TFIID complex 34
            TAF4B-containing transcription factor TFIID complex 0
Path 2
Term Annotations click to browse term
  cellular_component 18685
    cellular anatomical entity 18463
      organelle 12421
        membrane-bounded organelle 11396
          intracellular membrane-bounded organelle 10852
            nucleus 6842
              nuclear protein-containing complex 1244
                nuclear DNA-directed RNA polymerase complex 94
                  RNA polymerase II, holoenzyme 69
                    transcription factor TFIID complex 34
                      TAF4B-containing transcription factor TFIID complex 0
paths to the root