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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleus
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Accession:GO:0005634 term browser browse the term
Definition:A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Synonyms:exact_synonym: cell nucleus
 narrow_synonym: horsetail nucleus
 xref: NIF_Subcellular:sao1702920020;   Wikipedia:Cell_nucleus
 only_in_taxon: NCBITaxon:2759 ! Eukaryota


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Path 1
Term Annotations click to browse term
  cellular_component 16224
    intracellular 12304
      intracellular organelle 10736
        intracellular membrane-bounded organelle 9142
          nucleus 6261
            ARC complex 0
            ATF1-ATF4 transcription factor complex 2
            ATF4-CREB1 transcription factor complex 2
            ATR-ATRIP complex 0
            BRCA1-A complex 7
            BRCA1-B complex 0
            BRCA1-C complex 0
            BRCA1-Rad51 complex 0
            BRCA2-BRAF35 complex 0
            BRISC complex 5
            CAK-ERCC2 complex 4
            CLOCK-BMAL transcription complex 0
            COP9 signalosome 33
            CSL-Notch-Mastermind transcription factor complex 0
            CURI complex 2
            Cry-Per complex 1
            DNA helicase A complex 0
            DNA ligase III-XRCC1 complex 1
            DNA ligase IV complex 3
            DNA-dependent protein kinase complex 2
            DNA-dependent protein kinase-DNA ligase 4 complex 3
            E.F.G complex 0
            FHL2-CREB complex 0
            FHL3-CREB complex 0
            GATA1-TAL1-TCF3-Lmo2 complex 0
            GATA2-TAL1-TCF3-Lmo2 complex 0
            Ku70:Ku80 complex 3
            Lid2 complex 0
            LinE complex 0
            Mei2 nuclear dot complex 0
            Mre11 complex 7
            MutLalpha complex 3
            MutLbeta complex 0
            MutSalpha complex 2
            MutSbeta complex 2
            MutSgamma complex 0
            NURS complex 0
            Noc complex + 4
            P-TEFb-cap methyltransferase complex 0
            PCNA-p21 complex 2
            PDX1-PBX1b-MRG1 complex 0
            PcG protein complex + 46
            RC-1 DNA recombination complex 0
            RCAF complex 0
            RES complex 1
            RGS6-DNMT1-DMAP1 complex 0
            Rad51B-Rad51C complex 0
            Rad51B-Rad51C-Rad51D-XRCC2 complex 4
            Rad51C-XRCC3 complex 2
            Rhp55-Rhp57 complex 0
            SMC loading complex + 2
            SOSS complex 4
            SUMO activating enzyme complex 2
            THO complex + 7
            TRAMP complex 4
            Tor2-Mei2-Ste11 complex 0
            U2AF complex 4
            XRCC2-RAD51D complex 0
            activated SUMO-E1 ligase complex 0
            apolipoprotein B mRNA editing enzyme complex 1
            ascospore-type prospore nucleus 0
            assemblon 0
            carboxy-terminal domain protein kinase complex + 20
            catenin-TCF7L2 complex + 4
            chromatin silencing complex + 6
            core mediator complex 8
            dense nuclear body 0
            dosage compensation complex + 0
            exon-exon junction complex + 22
            generative cell nucleus 0
            germ cell nucleus + 33
            heteromeric SMAD protein complex 2
            histone pre-mRNA 3'end processing complex 7
            integrator complex 19
            left nucleus 0
            lobed nucleus 0
            mRNA cap methyltransferase complex 2
            macronucleus 0
            megasporocyte nucleus + 0
            micronucleus 0
            microprocessor complex 2
            microsporocyte nucleus 0
            mitotic checkpoint complex + 1
            nuclear DNA-directed RNA polymerase complex + 96
            nuclear RNA-directed RNA polymerase complex 1
            nuclear aryl hydrocarbon receptor complex 0
            nuclear cyclin-dependent protein kinase holoenzyme complex + 13
            nuclear envelope + 412
            nuclear inclusion body 12
            nuclear lumen + 3771
            nuclear microtubule 1
            nuclear stress granule 6
            nuclear telomere cap complex + 10
            nuclear ubiquitin ligase complex + 42
            nucleosome disassembly/reassembly complex 0
            nucleotide-excision repair complex + 13
            nucleus lagging edge 0
            nucleus leading edge 0
            primary endosperm nucleus 0
            pronucleus + 22
            retrotransposon nucleocapsid 0
            right nucleus 0
            small nuclear ribonucleoprotein complex + 65
            spliceosomal complex + 178
            tRNA-intron endonuclease complex 5
            telomerase holoenzyme complex + 20
            transcription export complex + 14
            transcription export complex 2 7
            transcription factor TFIIH core complex + 10
            upstream stimulatory factor complex 0
Path 2
Term Annotations click to browse term
  cellular_component 16224
    cellular anatomical entity 16056
      organelle 11222
        membrane-bounded organelle 9921
          intracellular membrane-bounded organelle 9142
            nucleus 6261
              ARC complex 0
              ATF1-ATF4 transcription factor complex 2
              ATF4-CREB1 transcription factor complex 2
              ATR-ATRIP complex 0
              BRCA1-A complex 7
              BRCA1-B complex 0
              BRCA1-C complex 0
              BRCA1-Rad51 complex 0
              BRCA2-BRAF35 complex 0
              BRISC complex 5
              CAK-ERCC2 complex 4
              CLOCK-BMAL transcription complex 0
              COP9 signalosome 33
              CSL-Notch-Mastermind transcription factor complex 0
              CURI complex 2
              Cry-Per complex 1
              DNA helicase A complex 0
              DNA ligase III-XRCC1 complex 1
              DNA ligase IV complex 3
              DNA-dependent protein kinase complex 2
              DNA-dependent protein kinase-DNA ligase 4 complex 3
              E.F.G complex 0
              FHL2-CREB complex 0
              FHL3-CREB complex 0
              GATA1-TAL1-TCF3-Lmo2 complex 0
              GATA2-TAL1-TCF3-Lmo2 complex 0
              Ku70:Ku80 complex 3
              Lid2 complex 0
              LinE complex 0
              Mei2 nuclear dot complex 0
              Mre11 complex 7
              MutLalpha complex 3
              MutLbeta complex 0
              MutSalpha complex 2
              MutSbeta complex 2
              MutSgamma complex 0
              NURS complex 0
              Noc complex + 4
              P-TEFb-cap methyltransferase complex 0
              PCNA-p21 complex 2
              PDX1-PBX1b-MRG1 complex 0
              PcG protein complex + 46
              RC-1 DNA recombination complex 0
              RCAF complex 0
              RES complex 1
              RGS6-DNMT1-DMAP1 complex 0
              Rad51B-Rad51C complex 0
              Rad51B-Rad51C-Rad51D-XRCC2 complex 4
              Rad51C-XRCC3 complex 2
              Rhp55-Rhp57 complex 0
              SMC loading complex + 2
              SOSS complex 4
              SUMO activating enzyme complex 2
              THO complex + 7
              TRAMP complex 4
              Tor2-Mei2-Ste11 complex 0
              U2AF complex 4
              XRCC2-RAD51D complex 0
              activated SUMO-E1 ligase complex 0
              apolipoprotein B mRNA editing enzyme complex 1
              ascospore-type prospore nucleus 0
              assemblon 0
              carboxy-terminal domain protein kinase complex + 20
              catenin-TCF7L2 complex + 4
              chromatin silencing complex + 6
              core mediator complex 8
              dense nuclear body 0
              dosage compensation complex + 0
              exon-exon junction complex + 22
              generative cell nucleus 0
              germ cell nucleus + 33
              heteromeric SMAD protein complex 2
              histone pre-mRNA 3'end processing complex 7
              integrator complex 19
              left nucleus 0
              lobed nucleus 0
              mRNA cap methyltransferase complex 2
              macronucleus 0
              megasporocyte nucleus + 0
              micronucleus 0
              microprocessor complex 2
              microsporocyte nucleus 0
              mitotic checkpoint complex + 1
              nuclear DNA-directed RNA polymerase complex + 96
              nuclear RNA-directed RNA polymerase complex 1
              nuclear aryl hydrocarbon receptor complex 0
              nuclear cyclin-dependent protein kinase holoenzyme complex + 13
              nuclear envelope + 412
              nuclear inclusion body 12
              nuclear lumen + 3771
              nuclear microtubule 1
              nuclear stress granule 6
              nuclear telomere cap complex + 10
              nuclear ubiquitin ligase complex + 42
              nucleosome disassembly/reassembly complex 0
              nucleotide-excision repair complex + 13
              nucleus lagging edge 0
              nucleus leading edge 0
              primary endosperm nucleus 0
              pronucleus + 22
              retrotransposon nucleocapsid 0
              right nucleus 0
              small nuclear ribonucleoprotein complex + 65
              spliceosomal complex + 178
              tRNA-intron endonuclease complex 5
              telomerase holoenzyme complex + 20
              transcription export complex + 14
              transcription export complex 2 7
              transcription factor TFIIH core complex + 10
              upstream stimulatory factor complex 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.