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ONTOLOGY REPORT - ANNOTATIONS


Term:collagen trimer
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Accession:GO:0005581 term browser browse the term
Definition:A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures.
Synonyms:xref: Wikipedia:Collagen



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collagen trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07006691.1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr 1:228,016,498...228,043,066 JBrowse link
G Adipoq adiponectin, C1Q and collagen domain containing part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:77,721,912...77,735,644
Ensembl chr11:77,721,912...77,735,564
JBrowse link
G C1qa complement C1q A chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:149,133,635...149,136,482
Ensembl chr 5:149,133,636...149,136,534
JBrowse link
G C1qb complement C1q B chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:149,118,843...149,124,394
Ensembl chr 5:149,118,846...149,124,407
JBrowse link
G C1qc complement C1q C chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:149,127,424...149,130,732
Ensembl chr 5:149,127,415...149,131,017
JBrowse link
G C1qtnf1 C1q and TNF related 1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:103,660,319...103,681,662
Ensembl chr10:103,660,327...103,681,660
JBrowse link
G C1qtnf5 C1q and TNF related 5 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:44,450,934...44,453,075
Ensembl chr 8:44,451,154...44,453,074
JBrowse link
G C1qtnf6 C1q and TNF related 6 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:110,077,867...110,084,584
Ensembl chr 7:110,077,878...110,084,412
JBrowse link
G Cert1 ceramide transporter 1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:27,882,546...27,987,090
Ensembl chr 2:27,882,555...27,987,074
JBrowse link
G Col10a1 collagen type X alpha 1 chain part_of ISO (MGI:4849906|PMID:20812917) RGD PMID:20812917 MGI:4849906 NCBI chr20:38,183,103...38,189,488
Ensembl chr20:38,182,494...38,189,494
JBrowse link
G Col11a1 collagen type XI alpha 1 chain part_of ISO (MGI:3766851|PMID:17683922) RGD PMID:17683922 MGI:3766851 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853
JBrowse link
G Col11a2 collagen type XI alpha 2 chain part_of IBA
ISO
PMID:21873635
(MGI:3766851|PMID:17683922)
RGD PMID:17683922 PMID:21873635 MGI:3766851, RGD:13792537 NCBI chr20:4,786,929...4,816,598
Ensembl chr20:4,786,929...4,815,985
JBrowse link
G Col12a1 collagen type XII alpha 1 chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:80,547,592...80,665,665
Ensembl chr 8:80,547,593...80,665,686
JBrowse link
G Col13a1 collagen type XIII alpha 1 chain part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:29,783,965...29,924,116
Ensembl chr20:29,783,965...29,924,032
JBrowse link
G Col14a1 collagen type XIV alpha 1 chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:86,722,093...86,937,215
Ensembl chr 7:86,722,094...86,937,214
JBrowse link
G Col15a1 collagen type XV alpha 1 chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:61,501,963...61,607,591
Ensembl chr 5:61,501,963...61,607,591
JBrowse link
G Col17a1 collagen type XVII alpha 1 chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:246,530,589...246,577,632
Ensembl chr 1:246,531,367...246,577,632
JBrowse link
G Col1a1 collagen type I alpha 1 chain part_of ISO MGI:2179405 (MGI:1351110|PMID:10608859), (MGI:3051465|PMID:14630726), (MGI:3664596|PMID:15383546), (MGI:3766665|PMID:17662583), (MGI:70182|PMID:7704020), (MGI:81870|PMID:8686743) RGD PMID:7704020 PMID:8686743 PMID:10608859 PMID:14630726 PMID:15383546 More... MGI:1351110 MGI:3051465 MGI:3664596 MGI:3766665 MGI:70182 MGI:81870 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624
JBrowse link
G Col1a2 collagen type I alpha 2 chain part_of ISO (MGI:1351110|PMID:10608859), (MGI:3766665|PMID:17662583), (MGI:81870|PMID:8686743) RGD PMID:8686743 PMID:10608859 PMID:17662583 MGI:1351110 MGI:3766665 MGI:81870 NCBI chr 4:32,563,938...32,598,868
Ensembl chr 4:32,563,381...32,598,867
JBrowse link
G Col20a1 collagen type XX alpha 1 chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:168,102,475...168,134,759
Ensembl chr 3:168,084,560...168,135,309
JBrowse link
G Col22a1 collagen type XXII alpha 1 chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:103,730,939...103,968,452
Ensembl chr 7:103,731,037...103,968,462
JBrowse link
G Col23a1 collagen type XXIII alpha 1 chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:35,549,090...35,839,152
Ensembl chr10:35,549,113...35,836,314
JBrowse link
G Col28a1 collagen type XXVIII alpha 1 chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:36,069,980...36,223,128
Ensembl chr 4:36,069,970...36,223,220
JBrowse link
G Col2a1 collagen type II alpha 1 chain part_of IBA
ISO
PMID:21873635
(MGI:3766851|PMID:17683922), (MGI:4849906|PMID:20812917)
RGD PMID:17683922 PMID:20812917 PMID:21873635 MGI:3766851 MGI:4849906, RGD:13792537 NCBI chr 7:129,098,489...129,127,620
Ensembl chr 7:129,098,786...129,127,546
JBrowse link
G Col3a1 collagen type III alpha 1 chain part_of ISO (MGI:3766665|PMID:17662583), (MGI:81870|PMID:8686743) RGD PMID:8686743 PMID:17662583 MGI:3766665 MGI:81870 NCBI chr 9:47,374,611...47,410,547
Ensembl chr 9:47,374,593...47,410,547
JBrowse link
G Col4a3 collagen type IV alpha 3 chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:83,875,958...84,004,955
Ensembl chr 9:83,875,561...84,001,895
JBrowse link
G Col5a1 collagen type V alpha 1 chain part_of ISO MGI:3664598 (MGI:3663234|PMID:16492673), (MGI:3664596|PMID:15383546), (MGI:3766851|PMID:17683922) RGD PMID:15383546 PMID:16492673 PMID:17683922 MGI:3663234 MGI:3664596 MGI:3766851 NCBI chr 3:11,208,429...11,356,715
Ensembl chr 3:11,208,512...11,354,588
JBrowse link
G Col5a2 collagen type V alpha 2 chain part_of ISO (MGI:70182|PMID:7704020) RGD PMID:7704020 MGI:70182 NCBI chr 9:47,448,736...47,598,396
Ensembl chr 9:47,448,736...47,598,154
JBrowse link
G Col6a2 collagen type VI alpha 2 chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:12,021,676...12,049,425
Ensembl chr20:12,021,767...12,057,564
JBrowse link
G Col6a3 collagen type VI alpha 3 chain part_of ISO (MGI:5565207|PMID:24563484) RGD PMID:24563484 MGI:5565207 NCBI chr 9:91,361,578...91,439,434
Ensembl chr 9:91,361,583...91,439,471
JBrowse link
G Colec10 collectin subfamily member 10 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:85,744,895...85,806,368
Ensembl chr 7:85,744,895...85,805,675
JBrowse link
G Colec11 collectin sub-family member 11 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:45,223,974...45,256,640
Ensembl chr 6:45,223,980...45,271,145
JBrowse link
G Colec12 collectin sub-family member 12 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr18:732,950...920,620
Ensembl chr18:732,950...920,618
JBrowse link
G Colq collagen like tail subunit of asymmetric acetylcholinesterase part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:6,731,850...6,824,973
Ensembl chr16:6,731,858...6,787,107
JBrowse link
G Cthrc1 collagen triple helix repeat containing 1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:70,122,474...70,132,756
Ensembl chr 7:70,122,474...70,132,756
JBrowse link
G Fcna ficolin A part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:8,445,904...8,449,128
Ensembl chr 3:8,445,907...8,449,105
JBrowse link
G Fcnb ficolin B part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:11,393,771...11,402,198
Ensembl chr 3:11,393,739...11,402,151
JBrowse link
G Gldn gliomedin part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:54,679,015...54,723,198
Ensembl chr 8:54,679,119...54,723,196
JBrowse link
G Lox lysyl oxidase part_of ISO (MGI:65985|PMID:7901452) RGD PMID:7901452 MGI:65985 NCBI chr18:45,964,311...46,041,477
Ensembl chr18:45,967,343...46,041,477
JBrowse link
G Mbl1 mannose binding lectin 1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:17,029,146...17,035,187
Ensembl chr16:17,029,118...17,035,174
JBrowse link
G Mbl2 mannose binding lectin 2 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:228,016,439...228,024,736 JBrowse link
G P4ha2 prolyl 4-hydroxylase subunit alpha 2 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:38,243,047...38,271,989
Ensembl chr10:38,243,139...38,287,314
JBrowse link
G Plod1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:158,340,674...158,367,581
Ensembl chr 5:158,340,490...158,367,620
JBrowse link
G Sftpa1 surfactant protein A1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:17,008,180...17,011,686
Ensembl chr16:17,008,180...17,011,685
JBrowse link
G Sftpd surfactant protein D part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:17,046,491...17,058,968
Ensembl chr16:17,046,483...17,059,927
JBrowse link
collagen type I trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a1 collagen type I alpha 1 chain part_of
located_in
ISO
IBA
(PMID:14976317), (PMID:17576241), (PMID:19932771)
(PMID:26848503), (PMID:28281531)
MGI:1857154 (MGI:66506|PMID:8018053), (MGI:73949|PMID:7790374)
PMID:21873635
RGD PMID:7790374 PMID:8018053 PMID:14976317 PMID:17576241 PMID:19932771 More... MGI:66506 MGI:73949, RGD:13792537 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624
JBrowse link
G Col1a2 collagen type I alpha 2 chain part_of
located_in
ISO
IEA
IBA
(PMID:17955022), (PMID:18375391), (PMID:19932771)
GO_REF:0000107
(PMID:26848503)
(MGI:68743|PMID:7825727)
PMID:21873635
RGD
Ensembl
PMID:7825727 PMID:17955022 PMID:18375391 PMID:19932771 PMID:26848503 More... GO_REF:0000107 MGI:68743, RGD:13792537 NCBI chr 4:32,563,938...32,598,868
Ensembl chr 4:32,563,381...32,598,867
JBrowse link
collagen type II trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col2a1 collagen type II alpha 1 chain part_of IBA
ISO
IEA
PMID:21873635
MGI:1857275 (MGI:1330638|PMID:9880238), (MGI:55057|PMID:7276808)
GO_REF:0000107
(PMID:8660302)
RGD
Ensembl
PMID:7276808 PMID:8660302 PMID:9880238 PMID:21873635 GO_REF:0000107 MGI:1330638 MGI:55057, RGD:13792537 NCBI chr 7:129,098,489...129,127,620
Ensembl chr 7:129,098,786...129,127,546
JBrowse link
collagen type III trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col3a1 collagen type III alpha 1 chain part_of ISO (PMID:17576241), (PMID:19932771), (PMID:7487954)
(MGI:68743|PMID:7825727)
RGD PMID:7487954 PMID:7825727 PMID:17576241 PMID:19932771 MGI:68743 NCBI chr 9:47,374,611...47,410,547
Ensembl chr 9:47,374,593...47,410,547
JBrowse link
collagen type IV trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col4a1 collagen type IV alpha 1 chain part_of ISO (PMID:16107487)
(MGI:2183884|PMID:12101409)
RGD PMID:12101409 PMID:16107487 MGI:2183884 NCBI chr16:78,183,533...78,294,412
Ensembl chr16:78,183,533...78,294,412
JBrowse link
G Col4a2 collagen type IV alpha 2 chain part_of IBA
ISO
PMID:21873635
(MGI:2183884|PMID:12101409)
RGD PMID:12101409 PMID:21873635 MGI:2183884, RGD:13792537 NCBI chr16:78,047,591...78,183,360
Ensembl chr16:78,047,602...78,183,839
JBrowse link
G Col4a3 collagen type IV alpha 3 chain part_of ISO (PMID:10766752)
(MGI:2183884|PMID:12101409)
RGD PMID:10766752 PMID:12101409 MGI:2183884 NCBI chr 9:83,875,958...84,004,955
Ensembl chr 9:83,875,561...84,001,895
JBrowse link
G Col4a4 collagen type IV alpha 4 chain part_of IBA
ISO
PMID:21873635
(MGI:69166|PMID:7962065)
(PMID:7523402)
RGD PMID:7523402 PMID:7962065 PMID:21873635 MGI:69166, RGD:13792537 NCBI chr 9:83,833,173...83,875,436
Ensembl chr 9:83,755,515...83,875,876
JBrowse link
G Col4a5 collagen type IV alpha 5 chain part_of ISO (MGI:2183884|PMID:12101409) RGD PMID:12101409 MGI:2183884 NCBI chr  X:105,118,762...105,322,699
Ensembl chr  X:105,118,820...105,322,692
JBrowse link
G Col4a6 collagen type IV alpha 6 chain part_of IBA
ISO
PMID:21873635
(MGI:2148900|PMID:10965041), (MGI:2183884|PMID:12101409)
RGD PMID:10965041 PMID:12101409 PMID:21873635 MGI:2148900 MGI:2183884, RGD:13792537 NCBI chr  X:104,766,463...105,117,499
Ensembl chr  X:104,766,957...105,117,500
JBrowse link
G Otol1 otolin 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:154,339,612...154,349,050
Ensembl chr 2:154,339,612...154,349,023
JBrowse link
collagen type IX trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col6a1 collagen type VI alpha 1 chain part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:11,906,105...11,924,599
Ensembl chr20:11,905,957...11,924,597
JBrowse link
G Col9a1 collagen type IX alpha 1 chain part_of IBA
ISO
IEA
PMID:21873635
(PMID:8660302)
GO_REF:0000107
RGD
Ensembl
PMID:8660302 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 9:26,585,034...26,668,222
Ensembl chr 9:26,585,034...26,668,213
JBrowse link
G Col9a2 collagen type IX alpha 2 chain part_of ISO (PMID:8660302) RGD PMID:8660302 NCBI chr 5:134,607,616...134,624,678
Ensembl chr 5:134,607,616...134,624,677
JBrowse link
G Col9a3 collagen type IX alpha 3 chain part_of IBA
ISO
PMID:21873635
(PMID:8660302)
RGD PMID:8660302 PMID:21873635 RGD:13792537 NCBI chr 3:167,711,776...167,734,468
Ensembl chr 3:167,711,840...167,734,465
JBrowse link
collagen type V trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col16a1 collagen type XVI alpha 1 chain part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:142,388,376...142,442,825
Ensembl chr 5:142,388,426...142,442,825
JBrowse link
G Col5a1 collagen type V alpha 1 chain part_of TAS
IEA
ISO
IBA
GO_REF:0000107
(PMID:9683580)
PMID:21873635
Ensembl
RGD
PMID:9683580 PMID:10852920 PMID:21873635 GO_REF:0000107, RGD:70693, RGD:13792537 NCBI chr 3:11,208,429...11,356,715
Ensembl chr 3:11,208,512...11,354,588
JBrowse link
G Col5a2 collagen type V alpha 2 chain part_of TAS
ISO
IBA
(PMID:9425231), (PMID:9783710)
PMID:21873635
RGD PMID:9425231 PMID:9783710 PMID:9822201 PMID:21873635 RGD:70694, RGD:13792537 NCBI chr 9:47,448,736...47,598,396
Ensembl chr 9:47,448,736...47,598,154
JBrowse link
G Col5a3 collagen type V alpha 3 chain part_of TAS
ISO
(MGI:3583053|PMID:15908193) RGD PMID:15908193 PMID:10852920 MGI:3583053, RGD:70693 NCBI chr 8:19,304,564...19,349,809
Ensembl chr 8:19,304,571...19,349,853
JBrowse link
collagen type VI trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcn decorin IDA RGD PMID:12840020 RGD:728372 NCBI chr 7:32,281,252...32,321,291
Ensembl chr 7:32,281,252...32,321,270
JBrowse link
collagen type X trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col10a1 collagen type X alpha 1 chain located_in ISO (PMID:11839302) RGD PMID:11839302 NCBI chr20:38,183,103...38,189,488
Ensembl chr20:38,182,494...38,189,494
JBrowse link
collagen type XI trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col11a1 collagen type XI alpha 1 chain part_of IBA
ISO
PMID:21873635
(PMID:3182841)
RGD PMID:3182841 PMID:21873635 RGD:13792537 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853
JBrowse link
collagen type XII trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col12a1 collagen type XII alpha 1 chain IDA RGD PMID:10419532 RGD:727275 NCBI chr 8:80,547,592...80,665,665
Ensembl chr 8:80,547,593...80,665,686
JBrowse link
collagen type XVIII trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col18a1 collagen type XVIII alpha 1 chain TAS RGD PMID:11592600 RGD:632362 NCBI chr20:11,474,104...11,582,593
Ensembl chr20:11,474,104...11,582,593
JBrowse link
fibrillar collagen trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col27a1 collagen type XXVII alpha 1 chain part_of ISO (MGI:3709703|PMID:17331945) RGD PMID:17331945 MGI:3709703 NCBI chr 5:76,647,302...76,765,987
Ensembl chr 5:76,647,429...76,765,174
JBrowse link
G Lum lumican part_of ISO (PMID:10734230) RGD PMID:10734230 NCBI chr 7:32,358,990...32,365,794
Ensembl chr 7:32,358,614...32,365,793
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19969
    protein-containing complex 6165
      collagen trimer 61
        FACIT collagen trimer + 5
        anchoring collagen complex + 1
        basement membrane collagen trimer + 8
        collagen type VI trimer 1
        collagen type XXVI trimer 0
        collagen type XXVIII trimer 0
        fibrillar collagen trimer + 11
        network-forming collagen trimer + 8
        short-chain collagen trimer + 1
        transmembrane collagen trimer + 0
paths to the root