Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:collagen trimer
go back to main search page
Accession:GO:0005581 term browser browse the term
Definition:A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures.
Synonyms:xref: Wikipedia:Collagen


show annotations for term's descendants           Sort by:
 
collagen trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07006691.1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr 1:248,428,099...248,463,139 JBrowse link
G Adipoq adiponectin, C1Q and collagen domain containing part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:81,330,845...81,344,488
Ensembl chr11:81,330,293...81,344,488
JBrowse link
G C1qa complement C1q A chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:155,261,254...155,264,101
Ensembl chr 5:155,261,250...155,264,143
JBrowse link
G C1qb complement C1q B chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:155,246,444...155,251,995
Ensembl chr 5:155,246,447...155,252,003
JBrowse link
G C1qc complement C1q C chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:155,255,013...155,258,631
Ensembl chr 5:155,255,005...155,258,392
JBrowse link
G C1qtnf1 C1q and TNF related 1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:107,455,845...107,477,160
Ensembl chr10:107,455,845...107,477,162
JBrowse link
G C1qtnf5 C1q and TNF related 5 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:48,443,515...48,445,639
Ensembl chr 8:48,443,767...48,445,637
JBrowse link
G C1qtnf6 C1q and TNF related 6 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:119,746,150...119,752,727
Ensembl chr 7:119,746,118...119,753,290
JBrowse link
G Cert1 ceramide transporter 1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:27,365,145...27,469,797
Ensembl chr 2:27,365,148...27,469,779
JBrowse link
G Col10a1 collagen type X alpha 1 chain part_of ISO (MGI:4849906|PMID:20812917) RGD PMID:20812917 MGI:4849906 NCBI chr20:41,180,295...41,190,664
Ensembl chr20:41,184,287...41,189,633
JBrowse link
G Col11a1 collagen type XI alpha 1 chain part_of ISO (MGI:3766851|PMID:17683922) RGD PMID:17683922 MGI:3766851 NCBI chr 2:216,863,423...217,056,523
Ensembl chr 2:216,863,428...217,056,523
JBrowse link
G Col11a2 collagen type XI alpha 2 chain part_of IBA
ISO
PMID:21873635
(MGI:3766851|PMID:17683922)
RGD PMID:17683922, PMID:21873635 MGI:3766851, RGD:13792537 NCBI chr20:3,829,324...3,859,022
Ensembl chr20:3,830,164...3,859,018
JBrowse link
G Col12a1 collagen type XII alpha 1 chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:87,042,820...87,150,701
Ensembl chr 8:87,040,799...87,158,368
JBrowse link
G Col13a1 collagen type XIII alpha 1 chain part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:31,456,502...31,598,360
Ensembl chr20:31,456,852...31,598,118
JBrowse link
G Col14a1 collagen type XIV alpha 1 chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:95,054,877...95,274,073
Ensembl chr 7:95,074,236...95,273,298
JBrowse link
G Col15a1 collagen type XV alpha 1 chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:62,840,360...62,950,240
Ensembl chr 5:64,476,317...64,542,645
Ensembl chr 5:64,476,317...64,542,645
JBrowse link
G Col17a1 collagen type XVII alpha 1 chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:267,416,681...267,465,049
Ensembl chr 1:267,417,459...267,463,705
JBrowse link
G Col1a1 collagen type I alpha 1 chain part_of ISO MGI:2179405 (MGI:1351110|PMID:10608859), (MGI:3051465|PMID:14630726), (MGI:3664596|PMID:15383546), (MGI:3766665|PMID:17662583), (MGI:70182|PMID:7704020), (MGI:81870|PMID:8686743) RGD PMID:7704020 PMID:8686743 PMID:10608859 PMID:14630726 PMID:15383546 PMID:17662583 MGI:1351110 MGI:3051465 MGI:3664596 MGI:3766665 MGI:70182 MGI:81870 NCBI chr10:82,745,801...82,762,790
Ensembl chr10:82,745,801...82,762,789
JBrowse link
G Col1a2 collagen type I alpha 2 chain part_of ISO (MGI:1351110|PMID:10608859), (MGI:3766665|PMID:17662583), (MGI:81870|PMID:8686743) RGD PMID:8686743 PMID:10608859 PMID:17662583 MGI:1351110 MGI:3766665 MGI:81870 NCBI chr 4:31,534,225...31,569,152
Ensembl chr 4:31,534,225...31,569,151
JBrowse link
G Col20a1 collagen type XX alpha 1 chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:176,491,292...176,526,009
Ensembl chr 3:176,494,768...176,526,018
JBrowse link
G Col22a1 collagen type XXII alpha 1 chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:113,014,896...113,251,165
Ensembl chr 7:113,015,747...113,228,439
JBrowse link
G Col23a1 collagen type XXIII alpha 1 chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:34,846,618...34,934,991
Ensembl chr10:34,903,343...34,933,539
JBrowse link
G Col28a1 collagen type XXVIII alpha 1 chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:34,048,074...34,198,558
Ensembl chr 4:34,048,533...34,194,764
JBrowse link
G Col2a1 collagen type II alpha 1 chain part_of IBA
ISO
PMID:21873635
(MGI:3766851|PMID:17683922), (MGI:4849906|PMID:20812917)
RGD PMID:17683922 PMID:20812917, PMID:21873635 MGI:3766851 MGI:4849906, RGD:13792537 NCBI chr 7:139,454,945...139,484,403
Ensembl chr 7:139,455,242...139,483,997
JBrowse link
G Col3a1 collagen type III alpha 1 chain part_of ISO (MGI:3766665|PMID:17662583), (MGI:81870|PMID:8686743) RGD PMID:8686743 PMID:17662583 MGI:3766665 MGI:81870 NCBI chr 9:52,023,295...52,059,221
Ensembl chr 9:52,023,295...52,059,217
JBrowse link
G Col4a3 collagen type IV alpha 3 chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:88,357,528...88,484,735
Ensembl chr 9:88,357,556...88,485,830
JBrowse link
G Col5a1 collagen type V alpha 1 chain part_of ISO MGI:3664598 (MGI:3663234|PMID:16492673), (MGI:3664596|PMID:15383546), (MGI:3766851|PMID:17683922) RGD PMID:15383546 PMID:16492673 PMID:17683922 MGI:3663234 MGI:3664596 MGI:3766851 NCBI chr 3:6,430,180...6,581,010
Ensembl chr 3:6,430,201...6,578,882
JBrowse link
G Col5a2 collagen type V alpha 2 chain part_of ISO (MGI:70182|PMID:7704020) RGD PMID:7704020 MGI:70182 NCBI chr 9:52,091,088...52,238,735
Ensembl chr 9:52,092,511...52,238,564
JBrowse link
G Col6a2 collagen type VI alpha 2 chain part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:12,773,472...12,801,179
Ensembl chr20:12,773,427...12,801,180
JBrowse link
G Col6a3 collagen type VI alpha 3 chain part_of ISO (MGI:5565207|PMID:24563484) RGD PMID:24563484 MGI:5565207 NCBI chr 9:97,926,784...98,004,643
Ensembl chr 9:97,926,787...98,004,546
JBrowse link
G Colec10 collectin subfamily member 10 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:93,975,451...94,035,999
Ensembl chr 7:93,975,451...94,035,999
JBrowse link
G Colec11 collectin sub-family member 11 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:47,857,767...47,889,961
Ensembl chr 6:47,857,771...47,890,033
JBrowse link
G Colec12 collectin sub-family member 12 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr18:867,048...1,054,047
Ensembl chr18:867,048...1,052,606
JBrowse link
G Colq collagen like tail subunit of asymmetric acetylcholinesterase part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:7,626,380...7,681,621
Ensembl chr16:7,627,603...7,681,576
JBrowse link
G Cthrc1 collagen triple helix repeat containing 1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:77,966,722...77,977,004
Ensembl chr 7:77,966,722...77,977,004
JBrowse link
G Fcna ficolin A part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:2,850,006...2,853,230
Ensembl chr 3:2,849,984...2,853,272
JBrowse link
G Fcnb ficolin B part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:6,617,816...6,626,193
Ensembl chr 3:6,617,751...6,626,284
JBrowse link
G Gldn gliomedin part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:58,870,516...58,914,605
Ensembl chr 8:58,870,516...58,914,603
JBrowse link
G Lox lysyl oxidase part_of ISO (MGI:65985|PMID:7901452) RGD PMID:7901452 MGI:65985 NCBI chr18:47,500,320...47,577,819
Ensembl chr18:47,500,330...47,577,819
JBrowse link
G Mbl1 mannose binding lectin 1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:18,736,154...18,742,193
Ensembl chr16:18,736,154...18,742,193
JBrowse link
G Mbl2 mannose binding lectin 2 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:248,435,069...248,442,669
Ensembl chr 1:248,723,397...248,729,962
JBrowse link
G P4ha2 prolyl 4-hydroxylase subunit alpha 2 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:39,435,227...39,464,134
Ensembl chr10:39,435,227...39,464,188
JBrowse link
G Plod1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:164,720,629...164,747,071
Ensembl chr 5:164,720,587...164,747,083
JBrowse link
G Sftpa1 surfactant protein A1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:18,716,019...18,719,404
Ensembl chr16:18,716,019...18,719,403
JBrowse link
G Sftpd surfactant protein D part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:18,753,535...18,766,100
Ensembl chr16:18,745,458...18,766,174
JBrowse link
collagen type I trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a1 collagen type I alpha 1 chain part_of ISO
IBA
(PMID:14976317), (PMID:17576241), (PMID:19932771)
MGI:1857154 (MGI:66506|PMID:8018053), (MGI:73949|PMID:7790374)
PMID:21873635
RGD PMID:7790374 PMID:8018053 PMID:14976317 PMID:17576241 PMID:19932771, PMID:21873635 MGI:66506 MGI:73949, RGD:13792537 NCBI chr10:82,745,801...82,762,790
Ensembl chr10:82,745,801...82,762,789
JBrowse link
G Col1a2 collagen type I alpha 2 chain part_of ISO
IBA
(PMID:17955022), (PMID:18375391), (PMID:19932771)
(MGI:68743|PMID:7825727)
PMID:21873635
RGD PMID:7825727 PMID:17955022 PMID:18375391 PMID:19932771, PMID:21873635 MGI:68743, RGD:13792537 NCBI chr 4:31,534,225...31,569,152
Ensembl chr 4:31,534,225...31,569,151
JBrowse link
collagen type II trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col2a1 collagen type II alpha 1 chain part_of IBA
ISO
IEA
PMID:21873635
MGI:1857275 (MGI:1330638|PMID:9880238), (MGI:55057|PMID:7276808)
GO_REF:0000107
(PMID:8660302)
RGD
Ensembl
PMID:7276808 PMID:8660302 PMID:9880238, PMID:21873635 GO_REF:0000107 MGI:1330638 MGI:55057, RGD:13792537 NCBI chr 7:139,454,945...139,484,403
Ensembl chr 7:139,455,242...139,483,997
JBrowse link
collagen type III trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col3a1 collagen type III alpha 1 chain part_of ISO (PMID:17576241), (PMID:19932771), (PMID:7487954)
(MGI:68743|PMID:7825727)
RGD PMID:7487954 PMID:7825727 PMID:17576241 PMID:19932771 MGI:68743 NCBI chr 9:52,023,295...52,059,221
Ensembl chr 9:52,023,295...52,059,217
JBrowse link
collagen type IV trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col4a1 collagen type IV alpha 1 chain part_of ISO (PMID:16107487)
(MGI:2183884|PMID:12101409)
RGD PMID:12101409 PMID:16107487 MGI:2183884 NCBI chr16:83,522,162...83,632,153
Ensembl chr16:83,522,162...83,632,153
JBrowse link
G Col4a2 collagen type IV alpha 2 chain part_of IBA
ISO
PMID:21873635
(MGI:2183884|PMID:12101409)
RGD PMID:12101409, PMID:21873635 MGI:2183884, RGD:13792537 NCBI chr16:83,386,388...83,522,169
Ensembl chr16:83,387,364...83,438,561
JBrowse link
G Col4a3 collagen type IV alpha 3 chain part_of ISO (PMID:10766752)
(MGI:2183884|PMID:12101409)
RGD PMID:10766752 PMID:12101409 MGI:2183884 NCBI chr 9:88,357,528...88,484,735
Ensembl chr 9:88,357,556...88,485,830
JBrowse link
G Col4a4 collagen type IV alpha 4 chain part_of IBA
ISO
PMID:21873635
(MGI:69166|PMID:7962065)
(PMID:7523402)
RGD PMID:7523402 PMID:7962065, PMID:21873635 MGI:69166, RGD:13792537 NCBI chr 9:88,314,763...88,357,183
Ensembl chr 9:88,232,455...88,357,182
JBrowse link
G Col4a5 collagen type IV alpha 5 chain part_of ISO (MGI:2183884|PMID:12101409) RGD PMID:12101409 MGI:2183884 NCBI chr  X:112,769,595...112,983,720
Ensembl chr  X:112,769,645...112,983,685
JBrowse link
G Col4a6 collagen type IV alpha 6 chain part_of IBA
ISO
PMID:21873635
(MGI:2148900|PMID:10965041), (MGI:2183884|PMID:12101409)
RGD PMID:10965041 PMID:12101409, PMID:21873635 MGI:2148900 MGI:2183884, RGD:13792537 NCBI chr  X:112,405,647...112,768,337
Ensembl chr  X:112,405,647...112,473,822
JBrowse link
G Otol1 otolin 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:166,845,543...166,866,513
Ensembl chr 2:166,856,784...166,866,195
JBrowse link
collagen type IX trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col6a1 collagen type VI alpha 1 chain part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:12,657,913...12,676,370
Ensembl chr20:12,658,065...12,675,561
JBrowse link
G Col9a1 collagen type IX alpha 1 chain part_of IBA
ISO
IEA
PMID:21873635
(PMID:8660302)
GO_REF:0000107
RGD
Ensembl
PMID:8660302, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 9:30,419,001...30,502,307
Ensembl chr 9:30,419,001...30,502,298
JBrowse link
G Col9a2 collagen type IX alpha 2 chain part_of ISO (PMID:8660302) RGD PMID:8660302 NCBI chr 5:139,962,684...139,979,865
Ensembl chr 5:139,963,002...139,979,864
JBrowse link
G Col9a3 collagen type IX alpha 3 chain part_of IBA
ISO
PMID:21873635
(PMID:8660302)
RGD PMID:8660302, PMID:21873635 RGD:13792537 NCBI chr 3:176,102,287...176,124,839
Ensembl chr 3:176,102,351...176,124,306
JBrowse link
collagen type V trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col16a1 collagen type XVI alpha 1 chain part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:148,257,030...148,311,645
Ensembl chr 5:148,257,642...148,311,645
JBrowse link
G Col5a1 collagen type V alpha 1 chain part_of TAS
IEA
ISO
IBA
GO_REF:0000107
(PMID:9683580)
PMID:21873635
Ensembl
RGD
PMID:9683580, PMID:10852920, PMID:21873635 GO_REF:0000107, RGD:70693, RGD:13792537 NCBI chr 3:6,430,180...6,581,010
Ensembl chr 3:6,430,201...6,578,882
JBrowse link
G Col5a2 collagen type V alpha 2 chain part_of TAS
ISO
IBA
(PMID:9425231), (PMID:9783710)
PMID:21873635
RGD PMID:9425231 PMID:9783710, PMID:9822201, PMID:21873635 RGD:70694, RGD:13792537 NCBI chr 9:52,091,088...52,238,735
Ensembl chr 9:52,092,511...52,238,564
JBrowse link
G Col5a3 collagen type V alpha 3 chain part_of TAS
ISO
(MGI:3583053|PMID:15908193) RGD PMID:15908193, PMID:10852920 MGI:3583053, RGD:70693 NCBI chr 8:21,786,324...21,831,751
Ensembl chr 8:21,786,324...21,831,668
JBrowse link
collagen type VI trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcn decorin IDA RGD PMID:12840020 RGD:728372 NCBI chr 7:38,742,250...38,782,282
Ensembl chr 7:38,742,051...38,782,323
JBrowse link
collagen type XI trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col11a1 collagen type XI alpha 1 chain part_of IBA
ISO
PMID:21873635
(PMID:3182841)
RGD PMID:3182841, PMID:21873635 RGD:13792537 NCBI chr 2:216,863,423...217,056,523
Ensembl chr 2:216,863,428...217,056,523
JBrowse link
collagen type XII trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col12a1 collagen type XII alpha 1 chain IDA RGD PMID:10419532 RGD:727275 NCBI chr 8:87,042,820...87,150,701
Ensembl chr 8:87,040,799...87,158,368
JBrowse link
collagen type XVIII trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col18a1 collagen type XVIII alpha 1 chain TAS RGD PMID:11592600 RGD:632362 NCBI chr20:12,225,202...12,332,858
Ensembl chr20:12,225,202...12,332,858
JBrowse link
fibrillar collagen trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col27a1 collagen type XXVII alpha 1 chain part_of ISO (MGI:3709703|PMID:17331945) RGD PMID:17331945 MGI:3709703 NCBI chr 5:79,054,004...79,172,442
Ensembl chr 5:79,055,521...79,170,765
JBrowse link
G Lum lumican part_of ISO (PMID:10734230) RGD PMID:10734230 NCBI chr 7:38,820,058...38,826,862
Ensembl chr 7:38,819,771...38,826,862
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20142
    protein-containing complex 6031
      collagen trimer 61
        FACIT collagen trimer + 5
        anchoring collagen complex + 1
        basement membrane collagen trimer + 8
        collagen type VI trimer 1
        collagen type XXVI trimer 0
        collagen type XXVIII trimer 0
        fibrillar collagen trimer + 11
        network-forming collagen trimer + 7
        short-chain collagen trimer + 0
        transmembrane collagen trimer + 0
paths to the root