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ONTOLOGY REPORT - ANNOTATIONS


Term:copper ion binding
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Accession:GO:0005507 term browser browse the term
Definition:Binding to a copper (Cu) ion.
Synonyms:exact_synonym: copper binding
 broad_synonym: copper/cadmium binding



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copper ion binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adnp activity-dependent neuroprotector homeobox IDA RGD PMID:14706557 RGD:2312790 NCBI chr 3:156,886,921...156,921,500
Ensembl chr 3:156,891,381...156,917,312
JBrowse link
G Ahcy adenosylhomocysteinase enables ISO (PMID:8419320) RGD PMID:8419320 NCBI chr 3:143,569,134...143,584,359
Ensembl chr 3:143,569,094...143,584,393
JBrowse link
G Ang angiogenin enables ISO (PMID:9245697) RGD PMID:9245697 NCBI chr15:24,312,711...24,323,361 JBrowse link
G Aoc1 amine oxidase, copper containing 1 enables IEA
IBA
ISS
ISO
GO_REF:0000002
GO_REF:0000033
GO_REF:0000118
GO_REF:0000024
(PMID:12072962), (PMID:19764817)
InterPro
GO_Central
TreeGrafter
UniProt
RGD
PMID:12072962 PMID:19764817 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr 4:77,812,260...77,831,846
Ensembl chr 4:77,812,260...77,831,840
JBrowse link
G Aoc3 amine oxidase, copper containing 3 enables IBA
ISO
GO_REF:0000033
(PMID:16046623)
GO_Central
RGD
PMID:16046623 GO_REF:0000033 NCBI chr10:86,272,757...86,280,702 JBrowse link
G Apoa4 apolipoprotein A4 enables ISO
IEA
(PMID:16945374)
GO_REF:0000107
RGD
Ensembl
PMID:16945374 GO_REF:0000107 NCBI chr 8:46,539,083...46,541,464
Ensembl chr 8:46,539,082...46,541,469
JBrowse link
G Atox1 antioxidant 1 copper chaperone enables ISO (PMID:12029094) RGD PMID:12029094 NCBI chr10:39,564,855...39,579,892
Ensembl chr10:39,564,857...39,579,950
JBrowse link
G Atp7a ATPase copper transporting alpha enables ISO
IBA
IEA
(PMID:15670166)
GO_REF:0000033
GO_REF:0000118
RGD
GO_Central
TreeGrafter
PMID:15670166 GO_REF:0000033 GO_REF:0000118 NCBI chr  X:71,094,144...71,201,550
Ensembl chr  X:71,094,202...71,198,354
JBrowse link
G Atp7b ATPase copper transporting beta enables IDA
IEA
IBA
ISO
GO_REF:0000118
GO_REF:0000033
GO_REF:0000002
GO_REF:0000107
(PMID:12029094), (PMID:14709553)
TreeGrafter
GO_Central
InterPro
Ensembl
RGD
PMID:12029094 PMID:14709553 PMID:14732483 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118, RGD:1581812 NCBI chr16:69,952,286...70,024,404
Ensembl chr16:69,951,778...70,023,636
JBrowse link
G Ccs copper chaperone for superoxide dismutase enables ISO
IBA
IEA
(PMID:9726962)
GO_REF:0000033
GO_REF:0000002
GO_REF:0000107
RGD
GO_Central
InterPro
Ensembl
PMID:9726962 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:202,113,792...202,134,931
Ensembl chr 1:202,113,804...202,134,915
JBrowse link
G Coa6 cytochrome c oxidase assembly factor 6 enables ISO (PMID:26160915) RGD PMID:26160915 NCBI chr19:54,395,746...54,398,348
Ensembl chr19:54,395,742...54,399,407
JBrowse link
G Commd1 copper metabolism domain containing 1 enables ISO (PMID:17309234) RGD PMID:17309234 NCBI chr14:96,880,463...96,984,494
Ensembl chr14:96,880,463...96,984,501
JBrowse link
G Cox11 cytochrome c oxidase copper chaperone COX11 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:75,458,735...75,465,322
Ensembl chr10:75,458,749...75,465,322
JBrowse link
G Cox17 cytochrome c oxidase copper chaperone COX17 enables ISO (PMID:12370308) RGD PMID:12370308 NCBI chr11:62,400,733...62,406,507 JBrowse link
G Cp ceruloplasmin enables IDA
ISO
IEA
(PMID:15634671), (PMID:16436657)
GO_REF:0000002
RGD
InterPro
PMID:15634671 PMID:16436657 PMID:12099680 GO_REF:0000002, RGD:727703 NCBI chr 2:102,439,433...102,498,075
Ensembl chr 2:102,439,624...102,498,075
JBrowse link
G Cuta cutA divalent cation tolerance homolog enables IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr20:5,022,956...5,024,580
Ensembl chr20:5,022,956...5,024,552
JBrowse link
G Cutal cutA divalent cation tolerance homolog-like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:18,154,300...18,174,957
Ensembl chr 3:18,154,300...18,173,796
JBrowse link
G Cutc cutC copper transporter enables ISO
IBA
(PMID:19878721)
GO_REF:0000033
RGD
GO_Central
PMID:19878721 GO_REF:0000033 NCBI chr 1:242,622,281...242,637,048
Ensembl chr 1:242,622,276...242,637,047
JBrowse link
G Dbh dopamine beta-hydroxylase enables IMP
IBA
ISO
ISS
IEA
GO_REF:0000033
(PMID:27152332), (PMID:7961964)
GO_REF:0000024
GO_REF:0000107
GO_Central
RGD
UniProt
Ensembl
PMID:7961964 PMID:27152332 PMID:10573542 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107, RGD:1625403 NCBI chr 3:10,488,260...10,505,245
Ensembl chr 3:10,488,260...10,505,248
JBrowse link
G Doxl1 diamine oxidase-like protein 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:77,879,428...77,883,044
Ensembl chr 4:77,879,410...77,883,044
JBrowse link
G Doxl2 diamine oxidase-like protein 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:77,934,551...77,938,333
Ensembl chr 4:77,934,545...77,938,331
JBrowse link
G F5 coagulation factor V enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:76,513,509...76,583,106
Ensembl chr13:76,513,255...76,582,317
JBrowse link
G F8 coagulation factor VIII enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:140,848...172,330
Ensembl chr18:140,955...171,857
JBrowse link
G G6pc1 glucose-6-phosphatase catalytic subunit 1 enables IEA GO_REF:0000002
GO_REF:0000118
InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chr10:86,307,400...86,318,766
Ensembl chr10:86,257,668...86,333,804
JBrowse link
G Gpc1 glypican 1 enables ISO
ISS
IEA
(PMID:12732622)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:12732622 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:93,396,234...93,424,047
Ensembl chr 9:93,396,234...93,424,047
JBrowse link
G Hamp hepcidin antimicrobial peptide enables ISO (PMID:20113314) RGD PMID:20113314 NCBI chr 1:86,170,926...86,172,865
Ensembl chr 1:86,170,901...86,172,891
JBrowse link
G Heph hephaestin enables ISO
IEA
(PMID:22961397)
GO_REF:0000002
RGD
InterPro
PMID:22961397 GO_REF:0000002 NCBI chr  X:61,151,131...61,402,980
Ensembl chr  X:61,296,345...61,402,980
JBrowse link
G Hephl1 hephaestin-like 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:11,896,768...11,965,282
Ensembl chr 8:11,898,532...11,965,267
JBrowse link
G Il1a interleukin 1 alpha enables ISO
IEA
ISS
(PMID:12746488)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:12746488 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:116,526,601...116,537,055
Ensembl chr 3:116,526,604...116,536,822
JBrowse link
G Lacc1 laccase domain containing 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:52,390,267...52,407,630
Ensembl chr15:52,395,183...52,407,545
JBrowse link
G Lox lysyl oxidase IMP RGD PMID:16432278 RGD:1600669 NCBI chr18:45,964,544...45,977,431
Ensembl chr18:45,967,343...46,041,477
JBrowse link
G Loxl1 lysyl oxidase-like 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:58,691,763...58,716,365
Ensembl chr 8:58,692,593...58,716,356
JBrowse link
G Loxl2 lysyl oxidase-like 2 enables IEA
ISO
ISS
GO_REF:0000104
(PMID:29581294)
GO_REF:0000024
UniProt
RGD
PMID:29581294 GO_REF:0000024 GO_REF:0000104 NCBI chr15:44,683,449...44,773,067
Ensembl chr15:44,683,880...44,773,067
JBrowse link
G Loxl3 lysyl oxidase-like 3 enables IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 4:115,540,640...115,556,958
Ensembl chr 4:115,540,685...115,557,466
JBrowse link
G Loxl4 lysyl oxidase-like 4 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:241,396,183...241,416,385
Ensembl chr 1:241,397,983...241,416,322
JBrowse link
G Moxd1 monooxygenase, DBH-like 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:21,075,124...21,165,348
Ensembl chr 1:21,075,122...21,161,779
JBrowse link
G Moxd2 monooxygenase, DBH-like 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:69,724,693...69,733,188
Ensembl chr 4:69,724,239...69,733,299
JBrowse link
G Mt-co2 mitochondrially encoded cytochrome c oxidase II enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr MT:7,006...7,689
NCBI chr MT:7,006...7,689
NCBI chr MT:7,006...7,689
Ensembl chr MT:7,006...7,689
JBrowse link
G Mt3 metallothionein 3 enables IDA
ISO
ISS
(PMID:21320589)
GO_REF:0000024
RGD
UniProt
PMID:21320589 PMID:12058024 GO_REF:0000024, RGD:625483 NCBI chr19:10,848,754...10,850,158
Ensembl chr19:10,848,755...10,850,158
JBrowse link
G Or4e2 olfactory receptor family 4 subfamily E member 5 enables ISO (MGI:5314551|PMID:22328155), (MGI:6154400|PMID:25185561), (MGI:6187791|PMID:29659735) RGD PMID:22328155 PMID:25185561 PMID:29659735 MGI:5314551 MGI:6154400 MGI:6187791 NCBI chr15:25,187,633...25,188,559
Ensembl chr15:25,179,800...25,191,297
JBrowse link
G Or5ar1 olfactory receptor family 5 subfamily AR member 1 enables ISO (MGI:6187791|PMID:29659735) RGD PMID:29659735 MGI:6187791 NCBI chr 3:70,907,592...70,908,524
Ensembl chr 3:70,906,547...70,912,666
JBrowse link
G P2rx2 purinergic receptor P2X 2 IDA RGD PMID:16190872 RGD:1642665 NCBI chr12:46,338,979...46,342,891
Ensembl chr12:46,339,549...46,342,891
JBrowse link
G P2rx4 purinergic receptor P2X 4 enables IDA PMID:12819199 RGD
BHF-UCL
PMID:12819199 PMID:12819199 RGD:1642695, RGD:1642695 NCBI chr12:33,844,609...33,862,265
Ensembl chr12:33,844,396...33,862,253
JBrowse link
G P2rx7 purinergic receptor P2X 7 IDA RGD PMID:17394459 RGD:1642698 NCBI chr12:33,889,709...33,934,168
Ensembl chr12:33,879,745...33,934,619
JBrowse link
G Pam peptidylglycine alpha-amidating monooxygenase enables IDA
IEA
GO_REF:0000002
PMID:10504734
InterPro
RGD
PMID:16931045 PMID:10504734 GO_REF:0000002, RGD:2302417, RGD:14390065 NCBI chr 9:97,998,581...98,271,966
Ensembl chr 9:98,122,916...98,271,965
JBrowse link
G Park7 Parkinsonism associated deglycase enables ISO
ISS
(PMID:23792957)
GO_REF:0000024
RGD
UniProt
PMID:23792957 GO_REF:0000024 NCBI chr 5:161,353,718...161,376,993
Ensembl chr 5:161,353,719...161,376,970
JBrowse link
G Prnd prion like protein doppel enables ISO
IBA
(PMID:20411530)
(PMID:12482851)
GO_REF:0000033
RGD
GO_Central
PMID:12482851 PMID:20411530 GO_REF:0000033 NCBI chr 3:119,213,462...119,218,742
Ensembl chr 3:119,213,429...119,218,745
JBrowse link
G Prnp prion protein enables ISS
ISO
GO_REF:0000024
(PMID:12500977)
(PMID:11900542)
UniProt
RGD
PMID:11900542 PMID:12500977 GO_REF:0000024 NCBI chr 3:119,186,073...119,201,513
Ensembl chr 3:119,177,485...119,203,937
JBrowse link
G Psme3 proteasome activator subunit 3 enables IEA GO_REF:0000002
GO_REF:0000118
InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chr10:86,257,672...86,265,458
Ensembl chr10:86,257,668...86,333,804
JBrowse link
G Rnpep arginyl aminopeptidase IDA RGD PMID:17142967 RGD:2325932 NCBI chr13:46,699,458...46,717,829
Ensembl chr13:46,699,463...46,717,998
JBrowse link
G S100a13 S100 calcium binding protein A13 enables ISO (PMID:12746488), (PMID:16145699) RGD PMID:12746488 PMID:16145699 NCBI chr 2:175,999,439...176,005,933 JBrowse link
G S100a5 S100 calcium binding protein A5 enables ISO
ISS
(PMID:19536568)
GO_REF:0000024
RGD
UniProt
PMID:19536568 GO_REF:0000024 NCBI chr 2:176,095,332...176,099,546
Ensembl chr 2:176,097,539...176,099,546
JBrowse link
G Slc11a2 solute carrier family 11 member 2 IDA RGD PMID:9242408 RGD:729857 NCBI chr 7:131,503,076...131,540,246
Ensembl chr 7:131,503,081...131,540,145
JBrowse link
G Slc31a1 solute carrier family 31 member 1 enables ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:26745413)
UniProt
Ensembl
RGD
PMID:26745413 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:75,814,744...75,844,241
Ensembl chr 5:75,814,743...75,844,228
JBrowse link
G Snca synuclein alpha enables ISO
ISS
(PMID:21319811), (PMID:21320589)
GO_REF:0000024
RGD
UniProt
PMID:21319811 PMID:21320589 GO_REF:0000024 NCBI chr 4:89,696,420...89,797,240
Ensembl chr 4:89,696,420...89,796,262
JBrowse link
G Sod1 superoxide dismutase 1 enables TAS
IBA
IEA
ISO
ISS
IMP
GO_REF:0000033
GO_REF:0000107
GO_REF:0000002
(PMID:17008312)
GO_REF:0000024
GO_Central
Ensembl
InterPro
RGD
UniProt
PMID:17008312 PMID:15337829 PMID:12514262 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107, RGD:1358244, RGD:634854 NCBI chr11:29,456,673...29,462,249
Ensembl chr11:29,456,558...29,462,249
JBrowse link
G Sod3 superoxide dismutase 3 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:58,610,104...58,615,845
Ensembl chr14:58,609,958...58,615,990
JBrowse link
G Svs1 seminal vesicle secretory protein 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:77,955,478...77,960,376
Ensembl chr 4:77,955,478...77,960,376
JBrowse link
G Tp53 tumor protein p53 enables ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:7824276)
UniProt
Ensembl
RGD
PMID:7824276 GO_REF:0000024 GO_REF:0000107 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Tymp thymidine phosphorylase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:120,438,768...120,444,088
Ensembl chr 7:120,438,770...120,443,874
Ensembl chr 7:120,438,770...120,443,874
JBrowse link
G Tyr tyrosinase enables ISO (PMID:11092760) RGD PMID:11092760 NCBI chr 1:141,115,036...141,210,207
Ensembl chr 1:141,115,036...141,210,207
JBrowse link
cupric ion binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Muc2 mucin 2, oligomeric mucus/gel-forming enables ISS
ISO
GO_REF:0000024
(PMID:36206754)
UniProt
RGD
PMID:36206754 GO_REF:0000024 NCBI chr 1:196,799,494...196,831,740
Ensembl chr 1:196,799,517...196,831,756
JBrowse link
G Park7 Parkinsonism associated deglycase enables ISO
IEA
ISS
(PMID:24567322)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
ParkinsonsUK-UCL
PMID:24567322 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:161,353,718...161,376,993
Ensembl chr 5:161,353,719...161,376,970
JBrowse link
G Prnp prion protein enables ISO (MGI:5882881|PMID:19381258) RGD PMID:19381258 MGI:5882881 NCBI chr 3:119,186,073...119,201,513
Ensembl chr 3:119,177,485...119,203,937
JBrowse link
G Sumf1 sulfatase modifying factor 1 enables IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 4:141,078,735...141,160,711
Ensembl chr 4:141,078,741...141,160,708
JBrowse link
cuprous ion binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atox1 antioxidant 1 copper chaperone enables ISO
IEA
(PMID:31283225)
GO_REF:0000107
RGD
Ensembl
PMID:31283225 GO_REF:0000107 NCBI chr10:39,564,855...39,579,892
Ensembl chr10:39,564,857...39,579,950
JBrowse link
G Atp7a ATPase copper transporting alpha enables ISS
ISO
GO_REF:0000024
(PMID:14572476), (PMID:15035611), (PMID:31283225)
UniProt
RGD
PMID:14572476 PMID:15035611 PMID:31283225 GO_REF:0000024 NCBI chr  X:71,094,144...71,201,550
Ensembl chr  X:71,094,202...71,198,354
JBrowse link
G Cox17 cytochrome c oxidase copper chaperone COX17 enables ISO (PMID:18093982) RGD PMID:18093982 NCBI chr11:62,400,733...62,406,507 JBrowse link
G Muc2 mucin 2, oligomeric mucus/gel-forming enables ISS
ISO
GO_REF:0000024
(PMID:36206754)
UniProt
RGD
PMID:36206754 GO_REF:0000024 NCBI chr 1:196,799,494...196,831,740
Ensembl chr 1:196,799,517...196,831,756
JBrowse link
G Park7 Parkinsonism associated deglycase enables ISO
ISS
IEA
(PMID:24144264), (PMID:24567322)
GO_REF:0000024
GO_REF:0000107
RGD
ParkinsonsUK-UCL
Ensembl
PMID:24144264 PMID:24567322 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:161,353,718...161,376,993
Ensembl chr 5:161,353,719...161,376,970
JBrowse link
G Prnp prion protein enables ISO (PMID:20564047) RGD PMID:20564047 NCBI chr 3:119,186,073...119,201,513
Ensembl chr 3:119,177,485...119,203,937
JBrowse link
G Snca synuclein alpha enables ISO
IEA
IBA
(PMID:25495902)
GO_REF:0000107
GO_REF:0000118
GO_REF:0000033
RGD
Ensembl
TreeGrafter
GO_Central
PMID:25495902 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:89,696,420...89,797,240
Ensembl chr 4:89,696,420...89,796,262
JBrowse link
G Sncb synuclein, beta enables ISO
IEA
IBA
(PMID:25495902)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000118
RGD
Ensembl
GO_Central
TreeGrafter
PMID:25495902 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr17:9,846,802...9,855,013
Ensembl chr17:9,846,802...9,855,012
JBrowse link
G Sncg synuclein, gamma enables IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr16:9,700,513...9,705,751
Ensembl chr16:9,700,514...9,705,368
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 21010
    binding 18037
      small molecule binding 6207
        ion binding 5911
          cation binding 4078
            metal ion binding 3965
              transition metal ion binding 1151
                copper ion binding 65
                  cupric ion binding 4
                  cuprous ion binding 9
paths to the root