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ONTOLOGY REPORT - ANNOTATIONS


Term:11-cis retinal binding
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Accession:GO:0005502 term browser browse the term
Definition:Interacting selectively and non-covalently with 11-cis retinal, an isomer of retinal that plays an important role in the visual process in most vertebrates. 11-cis retinal combines with opsin in the rods (scotopsin) to form rhodopsin or visual purple. Retinal is one of the three compounds that makes up vitamin A.
Synonyms:exact_synonym: 11-cis retinaldehyde binding
 broad_synonym: vitamin A binding


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11-cis retinal binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Opn4 opsin 4 JBrowse link 16 10,943,353 10,966,602 RGD:1624291
RGD:1600115
G Opn5 opsin 5 JBrowse link 9 21,045,457 21,092,517 RGD:1624291
G Rho rhodopsin JBrowse link 4 147,832,136 147,837,298 RGD:1600115
G Rlbp1 retinaldehyde binding protein 1 JBrowse link 1 141,097,789 141,111,375 RGD:1624291
RGD:1600115

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19460
    binding 15841
      small molecule binding 2582
        vitamin binding 135
          retinal binding 13
            11-cis retinal binding 4
Path 2
Term Annotations click to browse term
  molecular_function 19460
    binding 15841
      lipid binding 747
        isoprenoid binding 41
          retinoid binding 35
            retinal binding 13
              11-cis retinal binding 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.