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ONTOLOGY REPORT - ANNOTATIONS

Term:11-cis retinal binding
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Accession:GO:0005502 term browser browse the term
Definition:Binding to 11-cis retinal, an isomer of retinal that plays an important role in the visual process in most vertebrates. 11-cis retinal combines with opsin in the rods (scotopsin) to form rhodopsin or visual purple. Retinal is one of the three compounds that makes up vitamin A.
Synonyms:exact_synonym: 11-cis retinaldehyde binding
 broad_synonym: vitamin A binding


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11-cis retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP-binding cassette, sub-family A member 4 enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 3:121,837,547...121,973,719
Ensembl chr 3:121,838,092...121,973,772 		JBrowse link
G Opn3 opsin 3 enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:175,489,993...175,520,198
Ensembl chr 1:175,489,987...175,520,342 		JBrowse link
G Opn4 opsin 4 (melanopsin) enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr14:34,312,575...34,322,099
Ensembl chr14:34,312,575...34,322,099 		JBrowse link
G Opn5 opsin 5 enables IMP
ISO
IDA		 (MGI:6230806|PMID:22043319)
(PMID:24403072)		 UniProt
MGI		 PMID:22043319 PMID:24403072 GO_REF:0000119 MGI:4834177 MGI:6230806 NCBI chr17:42,867,670...42,922,321
Ensembl chr17:42,867,674...42,922,286 		JBrowse link
G Rlbp1 retinaldehyde binding protein 1 enables IDA (PMID:9326942) MGI PMID:9326942 NCBI chr 7:79,024,613...79,041,989
Ensembl chr 7:79,024,618...79,036,796 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 28831
    binding 17526
      small molecule binding 5681
        vitamin binding 143
          retinal binding 19
            11-cis retinal binding 5
Path 2
Term Annotations click to browse term
  molecular_function 28831
    binding 17526
      lipid binding 926
        isoprenoid binding 45
          retinoid binding 42
            retinal binding 19
              11-cis retinal binding 5
paths to the root