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ONTOLOGY REPORT - ANNOTATIONS

Term:RNA endonuclease activity
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Accession:GO:0004521 term browser browse the term
Definition:Catalysis of the hydrolysis of ester linkages within ribonucleic acid by creating internal breaks.
Synonyms:exact_synonym: endoribonuclease activity
 related_synonym: endonuclease G activity
 xref: Reactome:R-HSA-9708327 "ANG cleaves tRNA to yield tRNA halves";   Reactome:R-HSA-9708812 "ELAC2 cleaves pre-tRNA to yield 3' trailer (type II tRF or tRF-1)";   reactome:R-HSA-425923 "IRE1alpha hydrolyzes Xbp1 mRNA and Xbp1 mRNA is spliced";   reactome:R-HSA-426520 "Endonucleolytic RISC hydrolyzes target RNAs";   reactome:R-HSA-5601887 "PLD6 dimer cleaves primary piRNA transcript to pre-piRNA";   reactome:R-HSA-5601910 "Complexed PIWIL2:2'-O-methyl-piRNA cleaves transposon RNA";   reactome:R-HSA-6791223 "18SE pre-rRNA in pre-40S particles is nucleolytically processed during translocation from the nucleus to the cytosol";   reactome:R-HSA-6814555 "Integrator complex processes the 3' end of snRNA";   reactome:R-HSA-9009936 "RNASEL cleaves cellular ssRNA";   reactome:R-HSA-9009941 "RNASEL cleaves viral ssRNA";   reactome:R-HSA-9023909 "C3PO hydrolyzes cleaved passenger strand";   reactome:R-HSA-9023912 "AGO2 cleaves passenger strand of duplex siRNA";   reactome:R-HSA-927836 "SMG6 hydrolyzes mRNA with premature termination codon"

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RNA endonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936470:10,641,109...10,690,587
Ensembl chrNW_004936470:10,628,128...10,680,106 		JBrowse link
G Ago4 argonaute RISC component 4 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:18,335,536...18,371,398
Ensembl chrNW_004936474:18,335,531...18,370,077 		JBrowse link
G Ankzf1 ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1 enables ISO (PMID:30244831), (PMID:31011209) UniProt PMID:30244831 PMID:31011209 NCBI chrNW_004936569:1,645,780...1,653,526
Ensembl chrNW_004936569:1,650,088...1,653,522 		JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 ISO RGD PMID:19401441 RGD:2315668 NCBI chrNW_004936877:666,545...669,351
Ensembl chrNW_004936877:666,523...669,338 		JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936532:5,814,331...5,850,188
Ensembl chrNW_004936532:5,814,329...5,850,352 		JBrowse link
G Dicer1 dicer 1, ribonuclease III enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936846:528,768...584,599
Ensembl chrNW_004936846:532,972...575,689 		JBrowse link
G Drosha drosha ribonuclease III enables IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936518:9,100,094...9,218,405
Ensembl chrNW_004936518:9,106,142...9,219,174 		JBrowse link
G Endog endonuclease G enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936487:16,282,115...16,285,486
Ensembl chrNW_004936487:16,282,398...16,285,418 		JBrowse link
G Ern1 endoplasmic reticulum to nucleus signaling 1 enables IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936541:4,613,197...4,705,911
Ensembl chrNW_004936541:4,617,555...4,705,866 		JBrowse link
G Ern2 endoplasmic reticulum to nucleus signaling 2 enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936501:8,332,507...8,350,176
Ensembl chrNW_004936501:8,332,601...8,350,176 		JBrowse link
G Exog exo/endonuclease G enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936473:27,835,065...27,862,966
Ensembl chrNW_004936473:27,835,050...27,865,067 		JBrowse link
G Ints11 integrator complex subunit 11 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936737:1,820,472...1,833,301
Ensembl chrNW_004936737:1,822,826...1,833,104 		JBrowse link
G Khnyn KH and NYN domain containing enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936722:116,025...124,890
Ensembl chrNW_004936722:116,611...124,832 		JBrowse link
G Lactb2 lactamase beta 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936496:15,292,216...15,319,800
Ensembl chrNW_004936496:15,292,216...15,319,786 		JBrowse link
G LOC101973720 rap guanine nucleotide exchange factor 3 enables IEA Ensembl
TreeGrafter
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936512:5,636,197...5,659,606
Ensembl chrNW_004936512:5,636,758...5,659,300
Ensembl chrNW_004936512:5,636,758...5,659,300 		JBrowse link
G LOC101975928 protein argonaute-3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:18,479,811...18,552,457
Ensembl chrNW_004936474:18,443,453...18,552,143 		JBrowse link
G Mblac1 metallo-beta-lactamase domain containing 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:261,294...263,789
Ensembl chrNW_004936543:262,033...262,848 		JBrowse link
G Nob1 NIN1 (RPN12) binding protein 1 homolog enables IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936475:19,794,199...19,808,142
Ensembl chrNW_004936475:19,796,296...19,808,152 		JBrowse link
G Nynrin NYN domain and retroviral integrase containing enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936722:134,221...155,020
Ensembl chrNW_004936722:134,190...155,115 		JBrowse link
G Piwil1 piwi like RNA-mediated gene silencing 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936660:1,398,640...1,418,865
Ensembl chrNW_004936660:1,400,212...1,418,744 		JBrowse link
G Piwil2 piwi like RNA-mediated gene silencing 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936555:6,078,681...6,133,184
Ensembl chrNW_004936555:6,078,681...6,133,020 		JBrowse link
G Piwil4 piwi like RNA-mediated gene silencing 4 NOT|enables ISO (MGI:5319753|PMID:22020280) UniProt PMID:22020280 MGI:5319753 NCBI chrNW_004936674:355,302...402,388 JBrowse link
G Rcl1 RNA terminal phosphate cyclase like 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936503:375,191...450,596
Ensembl chrNW_004936503:373,934...450,596 		JBrowse link
G Rnasek ribonuclease K enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936595:284,313...286,167
Ensembl chrNW_004936595:284,151...286,167 		JBrowse link
G Rnaset2 ribonuclease T2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936489:16,540,558...16,555,669
Ensembl chrNW_004936489:16,540,562...16,555,670 		JBrowse link
G Smg6 SMG6 nonsense mediated mRNA decay factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:8,126,307...8,361,920
Ensembl chrNW_004936538:8,126,291...8,361,920 		JBrowse link
G Snd1 staphylococcal nuclease and tudor domain containing 1 enables IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936479:14,848,438...15,259,735
Ensembl chrNW_004936479:14,848,463...15,260,014 		JBrowse link
G Tsnax translin associated factor X enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936484:19,281,493...19,300,915
Ensembl chrNW_004936484:19,280,470...19,300,944 		JBrowse link
G Ybey ybeY metalloendoribonuclease enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936778:265,855...273,053
Ensembl chrNW_004936778:266,151...272,955 		JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:19,714,145...19,722,512
Ensembl chrNW_004936474:19,714,153...19,722,528 		JBrowse link
G Zc3h12b zinc finger CCCH-type containing 12B enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936635:2,580,693...2,690,297
Ensembl chrNW_004936635:2,588,510...2,641,616 		JBrowse link
G Zc3h12c zinc finger CCCH-type containing 12C enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936612:4,076,155...4,138,227
Ensembl chrNW_004936612:4,076,205...4,137,860 		JBrowse link
G Zc3h12d zinc finger CCCH-type containing 12D enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936489:2,454,889...2,472,392
Ensembl chrNW_004936489:2,455,728...2,472,328 		JBrowse link
3'-tRNA processing endoribonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elac1 elaC ribonuclease Z 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936497:12,323,699...12,338,991
Ensembl chrNW_004936497:12,326,679...12,339,167 		JBrowse link
G Elac2 elaC ribonuclease Z 2 enables IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000003 GO_REF:0000118 NCBI chrNW_004936595:5,543,476...5,565,075
Ensembl chrNW_004936595:5,543,221...5,565,200 		JBrowse link
endoribonuclease activity, cleaving miRNA-paired mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:10,641,109...10,690,587
Ensembl chrNW_004936470:10,628,128...10,680,106 		JBrowse link
G LOC101975928 protein argonaute-3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:18,479,811...18,552,457
Ensembl chrNW_004936474:18,443,453...18,552,143 		JBrowse link
endoribonuclease activity, cleaving siRNA-paired mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 enables IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936470:10,641,109...10,690,587
Ensembl chrNW_004936470:10,628,128...10,680,106 		JBrowse link
phosphodiesterase decapping endonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101965734 U8 snoRNA-decapping enzyme enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936529:4,825,277...4,827,011
Ensembl chrNW_004936529:4,825,189...4,826,886 		JBrowse link
G Nudt12 nudix hydrolase 12 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936523:964,858...979,118
Ensembl chrNW_004936523:964,813...979,250 		JBrowse link
ribonuclease III activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1, ribonuclease III enables IEA Ensembl
TreeGrafter
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000003 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936846:528,768...584,599
Ensembl chrNW_004936846:532,972...575,689 		JBrowse link
G Drosha drosha ribonuclease III enables IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936518:9,100,094...9,218,405
Ensembl chrNW_004936518:9,106,142...9,219,174 		JBrowse link
G Mrpl44 mitochondrial ribosomal protein L44 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936569:5,625,293...5,634,151
Ensembl chrNW_004936569:5,625,290...5,636,482 		JBrowse link
ribonuclease MRP activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpp40 ribonuclease P/MRP subunit p40 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936534:7,471,209...7,480,457
Ensembl chrNW_004936534:7,471,198...7,480,475 		JBrowse link
ribonuclease P activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101960348 E3 ubiquitin-protein ligase TRIM39 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936837:88,387...104,420
Ensembl chrNW_004936837:105,575...107,719
Ensembl chrNW_004936837:105,575...107,719 		JBrowse link
G Pop1 POP1 homolog, ribonuclease P/MRP subunit contributes_to
enables		 ISO
IEA		 (PMID:30454648), (PMID:8918471) UniProt
Ensembl		 PMID:8918471 PMID:30454648 GO_REF:0000107 NCBI chrNW_004936470:44,676,798...44,710,397
Ensembl chrNW_004936470:44,676,776...44,710,716 		JBrowse link
G Pop4 POP4 homolog, ribonuclease P/MRP subunit contributes_to
enables		 ISO
IEA		 (PMID:30454648) UniProt
Ensembl
UniProt		 PMID:30454648 GO_REF:0000003 GO_REF:0000107 NCBI chrNW_004936570:5,704,692...5,714,666
Ensembl chrNW_004936570:5,702,478...5,714,892 		JBrowse link
G Pop5 POP5 homolog, ribonuclease P/MRP subunit contributes_to
enables		 ISO
IEA		 (PMID:30454648) UniProt
Ensembl
UniProt		 PMID:30454648 GO_REF:0000003 GO_REF:0000107 NCBI chrNW_004936668:385,945...388,688
Ensembl chrNW_004936668:385,679...389,135 		JBrowse link
G Pop7 POP7 homolog, ribonuclease P/MRP subunit contributes_to
enables		 ISO
IEA		 (PMID:30454648) UniProt
UniProt
Ensembl		 PMID:30454648 GO_REF:0000003 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936543:725,338...732,707
Ensembl chrNW_004936543:725,268...736,748 		JBrowse link
G Prorp protein only RNase P catalytic subunit enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936494:9,282,894...9,414,350 JBrowse link
G Rpp14 ribonuclease P/MRP subunit p14 contributes_to
enables		 ISO
IEA		 (PMID:30454648) UniProt
TreeGrafter
UniProt		 PMID:30454648 GO_REF:0000003 GO_REF:0000118 NCBI chrNW_004936473:2,670,918...2,678,629 JBrowse link
G RPP25 ribonuclease P and MRP subunit p25 enables IEA Ensembl GO_REF:0000107 Ensembl chrNW_004936471:33,903,938...33,904,537 JBrowse link
G Rpp30 ribonuclease P/MRP subunit p30 contributes_to
enables		 ISO
IEA		 (PMID:30454648) UniProt
Ensembl		 PMID:30454648 GO_REF:0000107 NCBI chrNW_004936601:3,520,066...3,549,189
Ensembl chrNW_004936601:3,517,881...3,549,212 		JBrowse link
G Rpp38 ribonuclease P/MRP subunit p38 contributes_to
enables		 ISO
IEA		 (PMID:30454648) UniProt
TreeGrafter
Ensembl		 PMID:30454648 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936574:5,648,696...5,653,030
Ensembl chrNW_004936574:5,651,758...5,657,119 		JBrowse link
G Rpp40 ribonuclease P/MRP subunit p40 contributes_to
enables		 ISO
IEA		 (PMID:30454648) UniProt
TreeGrafter
Ensembl		 PMID:30454648 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936534:7,471,209...7,480,457
Ensembl chrNW_004936534:7,471,198...7,480,475 		JBrowse link
ribonuclease T2 activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rnaset2 ribonuclease T2 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936489:16,540,558...16,555,669
Ensembl chrNW_004936489:16,540,562...16,555,670 		JBrowse link
RNA endonuclease activity, producing 3'-phosphomonoesters term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rida reactive intermediate imine deaminase A homolog ISO RGD PMID:10400702 RGD:9685547 NCBI chrNW_004936470:44,710,481...44,721,159 JBrowse link
RNA endonuclease activity, producing 5'-phosphomonoesters term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 enables IEA UniProt GO_REF:0000104 NCBI chrNW_004936470:10,641,109...10,690,587
Ensembl chrNW_004936470:10,628,128...10,680,106 		JBrowse link
G Elac1 elaC ribonuclease Z 1 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936497:12,323,699...12,338,991
Ensembl chrNW_004936497:12,326,679...12,339,167 		JBrowse link
G Endov endonuclease V enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936594:4,332,225...4,345,743
Ensembl chrNW_004936594:4,332,208...4,343,068 		JBrowse link
G Pld6 phospholipase D family member 6 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936741:867,501...872,899
Ensembl chrNW_004936741:869,252...872,910 		JBrowse link
RNA lariat debranching enzyme activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbr1 debranching RNA lariats 1 enables IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 NCBI chrNW_004936540:504,638...515,913
Ensembl chrNW_004936540:505,619...515,964 		JBrowse link
RNA-DNA hybrid ribonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fen1 flap structure-specific endonuclease 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936581:1,328,685...1,332,713
Ensembl chrNW_004936581:1,328,685...1,332,728 		JBrowse link
G Nynrin NYN domain and retroviral integrase containing enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936722:134,221...155,020
Ensembl chrNW_004936722:134,190...155,115 		JBrowse link
G Rnaseh1 ribonuclease H1 enables IEA InterPro
TreeGrafter
UniProt
Ensembl		 GO_REF:0000002 GO_REF:0000003 GO_REF:0000104 GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 NCBI chrNW_004936532:1,700,414...1,714,689
Ensembl chrNW_004936532:1,701,227...1,714,695 		JBrowse link
G Rnaseh2a ribonuclease H2 subunit A enables IEA Ensembl
TreeGrafter
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000003 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936659:1,897,777...1,905,526
Ensembl chrNW_004936659:1,897,769...1,905,457 		JBrowse link
tRNA-intron endonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tsen2 tRNA splicing endonuclease subunit 2 enables IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000003 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936602:1,163,927...1,195,163
Ensembl chrNW_004936602:1,164,227...1,195,221 		JBrowse link
G Tsen34 tRNA splicing endonuclease subunit 34 enables IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000003 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936994:296,012...300,958
Ensembl chrNW_004936994:295,932...303,437 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 17150
    catalytic activity 5307
      catalytic activity, acting on a nucleic acid 581
        catalytic activity, acting on RNA 358
          RNA nuclease activity 112
            RNA endonuclease activity 58
              RNA endonuclease activity, producing 3'-phosphomonoesters + 3
              RNA endonuclease activity, producing 5'-phosphomonoesters + 27
              ribonuclease MRP activity 1
              ribonuclease T2 activity 1
Path 2
Term Annotations click to browse term
  molecular_function 17150
    catalytic activity 5307
      hydrolase activity 2254
        hydrolase activity, acting on ester bonds 745
          nuclease activity 188
            endonuclease activity 107
              RNA endonuclease activity 58
                RNA endonuclease activity, producing 3'-phosphomonoesters + 3
                RNA endonuclease activity, producing 5'-phosphomonoesters + 27
                ribonuclease MRP activity 1
                ribonuclease T2 activity 1
paths to the root