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ONTOLOGY REPORT - ANNOTATIONS

Term:RNA endonuclease activity
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Accession:GO:0004521 term browser browse the term
Definition:Catalysis of the hydrolysis of ester linkages within ribonucleic acid by creating internal breaks.
Synonyms:exact_synonym: endoribonuclease activity
 related_synonym: endonuclease G activity
 xref: Reactome:R-HSA-9708327 "ANG cleaves tRNA to yield tRNA halves";   Reactome:R-HSA-9708812 "ELAC2 cleaves pre-tRNA to yield 3' trailer (type II tRF or tRF-1)";   reactome:R-HSA-425923 "IRE1alpha hydrolyzes Xbp1 mRNA and Xbp1 mRNA is spliced";   reactome:R-HSA-426520 "Endonucleolytic RISC hydrolyzes target RNAs";   reactome:R-HSA-5601887 "PLD6 dimer cleaves primary piRNA transcript to pre-piRNA";   reactome:R-HSA-5601910 "Complexed PIWIL2:2'-O-methyl-piRNA cleaves transposon RNA";   reactome:R-HSA-6791223 "18SE pre-rRNA in pre-40S particles is nucleolytically processed during translocation from the nucleus to the cytosol";   reactome:R-HSA-6814555 "Integrator complex processes the 3' end of snRNA";   reactome:R-HSA-9009936 "RNASEL cleaves cellular ssRNA";   reactome:R-HSA-9009941 "RNASEL cleaves viral ssRNA";   reactome:R-HSA-9023909 "C3PO hydrolyzes cleaved passenger strand";   reactome:R-HSA-9023912 "AGO2 cleaves passenger strand of duplex siRNA";   reactome:R-HSA-927836 "SMG6 hydrolyzes mRNA with premature termination codon"

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RNA endonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 NOT|enables ISO (PMID:23809764) UniProt PMID:23809764 NCBI chrNW_004624764:18,904,607...18,940,594
Ensembl chrNW_004624764:18,904,639...18,940,594 		JBrowse link
G Ago2 argonaute RISC catalytic component 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624735:15,785,831...15,853,854
Ensembl chrNW_004624735:15,785,114...15,842,435 		JBrowse link
G Ago3 argonaute RISC catalytic component 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624764:18,948,469...19,078,247
Ensembl chrNW_004624764:18,948,484...19,052,523 		JBrowse link
G Ago4 argonaute RISC component 4 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624764:18,838,887...18,883,915
Ensembl chrNW_004624764:18,838,920...18,883,894 		JBrowse link
G Ankzf1 ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1 enables ISO (PMID:30244831), (PMID:31011209) UniProt PMID:30244831 PMID:31011209 NCBI chrNW_004624823:5,780,287...5,787,543
Ensembl chrNW_004624823:5,780,484...5,787,007 		JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 ISO RGD PMID:19401441 RGD:2315668 NCBI chrNW_004624825:4,711,921...4,714,926
Ensembl chrNW_004624825:4,708,093...4,714,921 		JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 enables IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624969:265,457...290,514
Ensembl chrNW_004624969:265,117...290,361 		JBrowse link
G Dicer1 dicer 1, ribonuclease III enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:7,604,049...7,681,481
Ensembl chrNW_004624734:7,608,273...7,651,819 		JBrowse link
G Drosha drosha ribonuclease III enables IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004624759:22,949,225...23,082,263
Ensembl chrNW_004624759:22,949,150...23,082,487 		JBrowse link
G Endou endonuclease, poly(U) specific enables IEA TreeGrafter
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624816:4,526,136...4,542,530
Ensembl chrNW_004624816:4,526,487...4,541,794 		JBrowse link
G Ern1 endoplasmic reticulum to nucleus signaling 1 enables IEA TreeGrafter
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624849:1,521,996...1,625,878
Ensembl chrNW_004624849:1,525,235...1,625,893 		JBrowse link
G Ern2 endoplasmic reticulum to nucleus signaling 2 enables IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624782:8,823,114...8,840,073
Ensembl chrNW_004624782:8,823,146...8,840,280 		JBrowse link
G Exog exo/endonuclease G enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624731:2,515,294...2,550,531
Ensembl chrNW_004624731:2,514,513...2,550,617 		JBrowse link
G Ints11 integrator complex subunit 11 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624818:8,287,539...8,299,456
Ensembl chrNW_004624818:8,289,929...8,299,254 		JBrowse link
G Khnyn KH and NYN domain containing enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624820:8,074,069...8,084,817
Ensembl chrNW_004624820:8,075,413...8,084,232 		JBrowse link
G Lactb2 lactamase beta 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624744:20,577,545...20,605,149 JBrowse link
G Mblac1 metallo-beta-lactamase domain containing 1 enables ISO (PMID:30507380) UniProt PMID:30507380 NCBI chrNW_004624740:16,870,490...16,871,646
Ensembl chrNW_004624740:16,870,789...16,871,574 		JBrowse link
G Nob1 NIN1 (RPN12) binding protein 1 homolog enables IEA TreeGrafter
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624746:16,661,039...16,672,600
Ensembl chrNW_004624746:16,661,126...16,675,962 		JBrowse link
G Nynrin NYN domain and retroviral integrase containing enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624820:8,093,119...8,114,465
Ensembl chrNW_004624820:8,094,908...8,118,679 		JBrowse link
G Piwil1 piwi like RNA-mediated gene silencing 1 enables IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624747:27,086,683...27,103,223
Ensembl chrNW_004624747:27,086,885...27,104,011 		JBrowse link
G Piwil2 piwi like RNA-mediated gene silencing 2 enables IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624758:17,834,268...17,911,886
Ensembl chrNW_004624758:17,834,191...17,902,575 		JBrowse link
G Piwil4 piwi like RNA-mediated gene silencing 4 enables
NOT|enables		 IEA
ISO		 (MGI:5319753|PMID:22020280) TreeGrafter
UniProt		 PMID:22020280 GO_REF:0000118 MGI:5319753 NCBI chrNW_004624735:39,220,242...39,285,794 JBrowse link
G Rcl1 RNA terminal phosphate cyclase like 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624736:9,545,580...9,609,897
Ensembl chrNW_004624736:9,545,433...9,609,887 		JBrowse link
G Rnasek ribonuclease K enables IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624786:9,556,891...9,558,946
Ensembl chrNW_004624786:9,556,874...9,558,946 		JBrowse link
G Slfn14 schlafen family member 14 enables IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624875:3,058,460...3,071,325
Ensembl chrNW_004624875:3,058,591...3,070,651 		JBrowse link
G Smg6 SMG6 nonsense mediated mRNA decay factor enables ISO (PMID:19060897)
(PMID:18974281)		 UniProt PMID:18974281 PMID:19060897 NCBI chrNW_004624786:4,729,857...4,969,708
Ensembl chrNW_004624786:4,726,676...4,969,646 		JBrowse link
G Snd1 staphylococcal nuclease and tudor domain containing 1 enables IEA UniProt GO_REF:0000104 NCBI chrNW_004624783:7,874,701...8,311,622
Ensembl chrNW_004624783:7,845,945...8,311,823 		JBrowse link
G Tsnax translin associated factor X enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624775:18,224,737...18,264,462
Ensembl chrNW_004624775:18,227,072...18,263,894 		JBrowse link
G Ybey ybeY metalloendoribonuclease enables ISO (PMID:28153719) UniProt PMID:28153719 NCBI chrNW_004624745:31,376,060...31,396,319
Ensembl chrNW_004624745:31,376,747...31,382,011 		JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A enables IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624764:20,224,919...20,234,108
Ensembl chrNW_004624764:20,224,906...20,234,629 		JBrowse link
G Zc3h12b zinc finger CCCH-type containing 12B enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624898:1,750,550...1,802,233
Ensembl chrNW_004624898:1,750,494...1,802,364 		JBrowse link
G Zc3h12c zinc finger CCCH-type containing 12C enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624784:5,113,608...5,179,490
Ensembl chrNW_004624784:5,113,931...5,173,198 		JBrowse link
G Zc3h12d zinc finger CCCH-type containing 12D enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624785:8,588,480...8,613,199 JBrowse link
3'-tRNA processing endoribonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elac1 elaC ribonuclease Z 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624778:14,517,934...14,536,509
Ensembl chrNW_004624778:14,517,716...14,530,864 		JBrowse link
G Elac2 elaC ribonuclease Z 2 enables IEA TreeGrafter
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000003 GO_REF:0000118 NCBI chrNW_004624877:852,422...874,736
Ensembl chrNW_004624877:850,726...874,831 		JBrowse link
endoribonuclease activity, cleaving miRNA-paired mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 enables ISO (PMID:22795694)
(PMID:15260970)		 BHF-UCL PMID:15260970 PMID:22795694 NCBI chrNW_004624735:15,785,831...15,853,854
Ensembl chrNW_004624735:15,785,114...15,842,435 		JBrowse link
G Ago3 argonaute RISC catalytic component 3 enables ISO (PMID:29040713) UniProt PMID:29040713 NCBI chrNW_004624764:18,948,469...19,078,247
Ensembl chrNW_004624764:18,948,484...19,052,523 		JBrowse link
endoribonuclease activity, cleaving siRNA-paired mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624735:15,785,831...15,853,854
Ensembl chrNW_004624735:15,785,114...15,842,435 		JBrowse link
phosphodiesterase decapping endonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101709761 U8 snoRNA-decapping enzyme enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:7,380,969...7,383,694
Ensembl chrNW_004624730:7,380,972...7,384,033 		JBrowse link
G LOC101717221 U8 snoRNA-decapping enzyme-like enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:7,353,992...7,356,012 JBrowse link
G Nudt12 nudix hydrolase 12 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624743:21,702,453...21,716,805
Ensembl chrNW_004624743:21,701,158...21,717,123 		JBrowse link
ribonuclease A activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rnase6 ribonuclease A family member 6 enables IEA UniProt GO_REF:0000003 NCBI chrNW_004624825:4,468,213...4,469,557
Ensembl chrNW_004624825:4,468,213...4,469,566 		JBrowse link
ribonuclease III activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1, ribonuclease III enables IEA TreeGrafter
InterPro
UniProt
Ensembl		 GO_REF:0000002 GO_REF:0000003 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624734:7,604,049...7,681,481
Ensembl chrNW_004624734:7,608,273...7,651,819 		JBrowse link
G Drosha drosha ribonuclease III enables IEA TreeGrafter
Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624759:22,949,225...23,082,263
Ensembl chrNW_004624759:22,949,150...23,082,487 		JBrowse link
G Mrpl44 mitochondrial ribosomal protein L44 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624823:1,334,934...1,343,025
Ensembl chrNW_004624823:1,335,271...1,343,588 		JBrowse link
ribonuclease MRP activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpp40 ribonuclease P/MRP subunit p40 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624756:20,233,659...20,242,733
Ensembl chrNW_004624756:20,233,664...20,243,598 		JBrowse link
ribonuclease P activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pop1 POP1 homolog, ribonuclease P/MRP subunit contributes_to
enables		 ISO
IEA		 (PMID:30454648), (PMID:8918471) UniProt
Ensembl		 PMID:8918471 PMID:30454648 GO_REF:0000107 NCBI chrNW_004624763:5,264,003...5,299,000
Ensembl chrNW_004624763:5,269,847...5,300,723 		JBrowse link
G Pop4 POP4 homolog, ribonuclease P/MRP subunit contributes_to
enables		 ISO
IEA		 (PMID:30454648) UniProt
UniProt
Ensembl		 PMID:30454648 GO_REF:0000003 GO_REF:0000107 NCBI chrNW_004624794:4,788,960...4,799,307
Ensembl chrNW_004624794:4,791,609...4,801,359 		JBrowse link
G Pop5 POP5 homolog, ribonuclease P/MRP subunit contributes_to
enables		 ISO
IEA		 (PMID:30454648) UniProt
UniProt
Ensembl		 PMID:30454648 GO_REF:0000003 GO_REF:0000107 NCBI chrNW_004624747:13,088,928...13,092,691
Ensembl chrNW_004624747:13,088,947...13,092,001 		JBrowse link
G Pop7 POP7 homolog, ribonuclease P/MRP subunit contributes_to
enables		 ISO
IEA		 (PMID:30454648) UniProt
Ensembl
UniProt		 PMID:30454648 GO_REF:0000003 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004624740:16,398,272...16,399,364
Ensembl chrNW_004624740:16,398,272...16,399,417 		JBrowse link
G PRORP protein only RNase P catalytic subunit enables IEA TreeGrafter
UniProt		 GO_REF:0000003 GO_REF:0000118 Ensembl chrNW_004624838:1,492,313...1,626,941 JBrowse link
G Rpp14 ribonuclease P/MRP subunit p14 enables
contributes_to		 IEA
ISO		 (PMID:30454648) TreeGrafter
UniProt
UniProt		 PMID:30454648 GO_REF:0000003 GO_REF:0000118 NCBI chrNW_004624822:5,385,116...5,386,765 JBrowse link
G Rpp21 ribonuclease P/MRP subunit p21 contributes_to ISO (PMID:30454648) UniProt PMID:30454648 NCBI chrNW_004624754:25,171,434...25,179,038
Ensembl chrNW_004624754:25,176,620...25,178,251 		JBrowse link
G Rpp25 ribonuclease P and MRP subunit p25 contributes_to ISO (PMID:30454648) UniProt PMID:30454648 NCBI chrNW_004624894:134,202...136,226
Ensembl chrNW_004624894:134,804...135,364 		JBrowse link
G Rpp30 ribonuclease P/MRP subunit p30 contributes_to ISO (PMID:30454648) UniProt PMID:30454648 NCBI chrNW_004624737:2,087,357...2,114,878
Ensembl chrNW_004624737:2,086,748...2,114,618 		JBrowse link
G Rpp38 ribonuclease P/MRP subunit p38 contributes_to
enables		 ISO
IEA		 (PMID:30454648) UniProt
TreeGrafter		 PMID:30454648 GO_REF:0000118 NCBI chrNW_004624805:456,432...460,906
Ensembl chrNW_004624805:453,703...460,430 		JBrowse link
G Rpp40 ribonuclease P/MRP subunit p40 contributes_to
enables		 ISO
IEA		 (PMID:30454648) UniProt
Ensembl
TreeGrafter		 PMID:30454648 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624756:20,233,659...20,242,733
Ensembl chrNW_004624756:20,233,664...20,243,598 		JBrowse link
RNA endonuclease activity, producing 3'-phosphomonoesters term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rida reactive intermediate imine deaminase A homolog ISO RGD PMID:10400702 RGD:9685547 NCBI chrNW_004624763:5,249,905...5,263,994
Ensembl chrNW_004624763:5,247,715...5,263,880 		JBrowse link
RNA endonuclease activity, producing 5'-phosphomonoesters term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elac1 elaC ribonuclease Z 1 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624778:14,517,934...14,536,509
Ensembl chrNW_004624778:14,517,716...14,530,864 		JBrowse link
G Endov endonuclease V enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624801:9,577,034...9,590,121
Ensembl chrNW_004624801:9,577,577...9,590,236 		JBrowse link
G Pld6 phospholipase D family member 6 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624849:4,202,398...4,245,217
Ensembl chrNW_004624849:4,224,986...4,227,755 		JBrowse link
RNA lariat debranching enzyme activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbr1 debranching RNA lariats 1 enables IEA TreeGrafter
UniProt
Ensembl		 GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 NCBI chrNW_004624730:14,682,951...14,693,450
Ensembl chrNW_004624730:14,681,730...14,711,368 		JBrowse link
RNA-DNA hybrid ribonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fen1 flap structure-specific endonuclease 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624926:608,874...613,487
Ensembl chrNW_004624926:608,874...612,995 		JBrowse link
G Nynrin NYN domain and retroviral integrase containing enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624820:8,093,119...8,114,465
Ensembl chrNW_004624820:8,094,908...8,118,679 		JBrowse link
G Rnaseh1 ribonuclease H1 enables IEA TreeGrafter
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000003 GO_REF:0000104 GO_REF:0000117 GO_REF:0000118 NCBI chrNW_004624846:5,195,589...5,201,823
Ensembl chrNW_004624846:5,195,589...5,203,487 		JBrowse link
G Rnaseh2a ribonuclease H2 subunit A enables IEA TreeGrafter
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000003 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624901:411,023...419,831
Ensembl chrNW_004624901:411,078...419,831 		JBrowse link
tRNA-intron endonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tsen2 tRNA splicing endonuclease subunit 2 enables IEA TreeGrafter
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000003 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624956:21,284...51,588
Ensembl chrNW_004624956:22,035...46,874 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 16326
    catalytic activity 5070
      catalytic activity, acting on a nucleic acid 564
        catalytic activity, acting on RNA 346
          RNA nuclease activity 109
            RNA endonuclease activity 59
              RNA endonuclease activity, producing 3'-phosphomonoesters + 3
              RNA endonuclease activity, producing 5'-phosphomonoesters + 28
              ribonuclease MRP activity 1
              ribonuclease T2 activity 0
Path 2
Term Annotations click to browse term
  molecular_function 16326
    catalytic activity 5070
      hydrolase activity 2095
        hydrolase activity, acting on ester bonds 714
          nuclease activity 195
            endonuclease activity 110
              RNA endonuclease activity 59
                RNA endonuclease activity, producing 3'-phosphomonoesters + 3
                RNA endonuclease activity, producing 5'-phosphomonoesters + 28
                ribonuclease MRP activity 1
                ribonuclease T2 activity 0
paths to the root