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ONTOLOGY REPORT - ANNOTATIONS


Term:mRNA binding
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Accession:GO:0003729 term browser browse the term
Definition:Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
Synonyms:narrow_synonym: base pairing with mRNA
 alt_id: GO:0000499


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mRNA binding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1cf APOBEC1 complementation factor ISO RGD PMID:11870221 RGD:631910 NCBI chrNW_004936735:2,130,943...2,177,815 JBrowse link
G Ago2 argonaute RISC catalytic component 2 ISO (MGI:4868529|PMID:20975942), (MGI:5516374|PMID:24101522) MGI PMID:20975942 PMID:24101522 MGI:4868529 MGI:5516374 NCBI chrNW_004936470:10,641,109...10,690,587 JBrowse link
G Arc activity regulated cytoskeleton associated protein ISO PMID:29328916 UniProt PMID:29328916 RGD:13514080 NCBI chrNW_004936470:9,185,145...9,188,260 JBrowse link
G C1qbp complement C1q binding protein ISO (MGI:5487496|PMID:22904065) UniProt PMID:22904065 MGI:5487496 NCBI chrNW_004936677:2,371,400...2,376,608 JBrowse link
G Calr calreticulin ISO (PMID:14726956)
(MGI:3813434|PMID:14726956)
BHF-UCL PMID:14726956 MGI:3813434 RGD:8554221 NCBI chrNW_004936659:1,994,695...1,999,070 JBrowse link
G Celf1 CUGBP Elav-like family member 1 ISO (PMID:14726956)
(MGI:6405956|PMID:32245946)
(MGI:5914794|PMID:28763438)
BHF-UCL
MGI
PMID:14726956 PMID:28763438 PMID:32245946 MGI:5914794 MGI:6405956 NCBI chrNW_004936562:1,699,774...1,785,285 JBrowse link
G Celf4 CUGBP Elav-like family member 4 ISO (MGI:1930458|PMID:11158314) MGI PMID:11158314 MGI:1930458 NCBI chrNW_004936517:8,010,133...8,010,721 JBrowse link
G Cluh clustered mitochondria homolog ISO (PMID:25349259) UniProtKB PMID:25349259 NCBI chrNW_004936538:8,698,374...8,719,281 JBrowse link
G Copa COPI coat complex subunit alpha ISO (MGI:4946576|PMID:21300694) MGI PMID:21300694 MGI:4946576 NCBI chrNW_004936740:301,928...347,323 JBrowse link
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 ISO (MGI:3606735|PMID:11702780) MGI PMID:11702780 MGI:3606735 NCBI chrNW_004936483:17,216,288...17,296,430 JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 ISO (PMID:21295486) UniProtKB PMID:21295486 NCBI chrNW_004936545:7,045,043...7,077,710 JBrowse link
G Ddx3x DEAD-box helicase 3 X-linked ISO (PMID:29062139) UniProt PMID:29062139 NCBI chrNW_004936502:7,770,896...7,820,555 JBrowse link
G Dhfr dihydrofolate reductase ISO (PMID:21876184) UniProtKB PMID:21876184 NCBI chrNW_004936469:67,962...83,116 JBrowse link
G Dhx33 DEAH-box helicase 33 ISO (PMID:26100019) UniProtKB PMID:26100019 NCBI chrNW_004936677:2,345,153...2,367,247 JBrowse link
G Dhx9 DExH-box helicase 9 ISO (PMID:28221134)
(PMID:10198287)
UniProtKB PMID:10198287 PMID:28221134 NCBI chrNW_004936481:6,896,487...6,934,938 JBrowse link
G Dnd1 DND microRNA-mediated repression inhibitor 1 ISO (PMID:22730312) AgBase PMID:22730312 NCBI chrNW_004936531:9,607,678...9,610,245 JBrowse link
G Dppa5 developmental pluripotency associated 5 ISO (MGI:3692058|PMID:16872451) MGI PMID:16872451 MGI:3692058 NCBI chrNW_004937318:21,726...22,590 JBrowse link
G Dxo decapping exoribonuclease ISO (MGI:5488528|PMID:23523372) UniProt PMID:23523372 MGI:5488528 NCBI chrNW_004936727:1,576,823...1,579,158 JBrowse link
G Eef1a1 eukaryotic translation elongation factor 1 alpha 1 ISO RGD PMID:19501573 RGD:7242926 NCBI chrNW_004936859:740,620...744,534 JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 ISO (PMID:22961380) UniProtKB PMID:22961380 NCBI chrNW_004936594:4,148,401...4,160,290 JBrowse link
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 ISO (MGI:5614138|PMID:25456498) MGI PMID:25456498 MGI:5614138 NCBI chrNW_004936755:586,366...635,294 JBrowse link
G Eif4g1 eukaryotic translation initiation factor 4 gamma 1 ISO (PMID:24092755) ParkinsonsUK-UCL PMID:24092755 NCBI chrNW_004936578:5,548,526...5,567,220 JBrowse link
G Elavl1 ELAV like RNA binding protein 1 ISO (MGI:5795824|PMID:17288565) UniProt PMID:17288565 MGI:5795824 NCBI chrNW_004936588:4,931,665...4,959,032 JBrowse link
G Elavl4 ELAV like RNA binding protein 4 ISO (MGI:5514289|PMID:23836929), (MGI:6436403|PMID:17234598) RGD
MGI
PMID:10436048 PMID:17234598 PMID:23836929 MGI:5514289 MGI:6436403 RGD:9685302 NCBI chrNW_004936522:10,349,684...10,435,963 JBrowse link
G Esrp1 epithelial splicing regulatory protein 1 ISO (PMID:19285943) UniProtKB PMID:19285943 NCBI chrNW_004936544:7,633,266...7,690,624 JBrowse link
G Esrp2 epithelial splicing regulatory protein 2 ISO (PMID:19285943) UniProtKB PMID:19285943 NCBI chrNW_004936475:18,557,840...18,564,461 JBrowse link
G Fmr1 FMRP translational regulator 1 ISO (PMID:11157796), (PMID:18936162), (PMID:25561520)
(MGI:2684495|PMID:14613971)
UniProtKB
UniProt
RGD
PMID:11157796 PMID:14613971 PMID:18936162 PMID:24338128 PMID:25561520 MGI:2684495 RGD:11667958 NCBI chrNW_004936513:1,290,038...1,327,850 JBrowse link
G Fyttd1 forty-two-three domain containing 1 ISO (PMID:19836239) UniProtKB PMID:19836239 NCBI chrNW_004936784:344,564...370,088 JBrowse link
G G3bp1 G3BP stress granule assembly factor 1 ISO (MGI:5317392|PMID:21652632) MGI PMID:21652632 MGI:5317392 NCBI chrNW_004936515:10,916,442...10,949,080 JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 ISO RGD PMID:23106379 RGD:10045574 NCBI chrNW_004936512:11,481,017...11,487,737 JBrowse link
G Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 ISO RGD PMID:11886857 RGD:625404 NCBI chrNW_004936509:6,576,933...6,585,734 JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C ISO (MGI:87001|PMID:9128719) RGD
MGI
PMID:9128719 PMID:9792439 MGI:87001 RGD:10041038 NCBI chrNW_004936880:368,041...425,967 JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D ISO RGD PMID:18583400 RGD:10041065 NCBI chrNW_004936738:2,096,370...2,115,135 JBrowse link
G Hnrnpll heterogeneous nuclear ribonucleoprotein L like ISO (PMID:18669861) UniProtKB PMID:18669861 NCBI chrNW_004936508:12,653,861...12,680,816 JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 ISO RGD PMID:19703590 RGD:5686808 NCBI chrNW_004936835:316,767...321,999 JBrowse link
G Igf2bp1 insulin like growth factor 2 mRNA binding protein 1 ISO (PMID:17101699), (PMID:17289661) UniProtKB PMID:17101699 PMID:17289661 NCBI chrNW_004936490:12,430,343...12,468,794 JBrowse link
G Jrk Jrk helix-turn-helix protein ISO (MGI:2155553|PMID:11756500) MGI PMID:11756500 MGI:2155553 NCBI chrNW_004936470:9,152,417...9,155,797 JBrowse link
G Khsrp KH-type splicing regulatory protein ISO (MGI:5439239|PMID:22844247) MGI PMID:22844247 MGI:5439239 NCBI chrNW_004936588:3,764,401...3,774,492 JBrowse link
G Lin28a lin-28 homolog A ISO (MGI:3709663|PMID:17473174) MGI PMID:17473174 MGI:3709663 NCBI chrNW_004936474:10,896,153...10,909,247 JBrowse link
G LOC101965734 U8 snoRNA-decapping enzyme ISO (PMID:21337011) UniProtKB PMID:21337011 NCBI chrNW_004936529:4,825,277...4,827,011 JBrowse link
G LOC101970652 translational activator of cytochrome c oxidase 1 ISO (MGI:5881987|PMID:27319982) MGI PMID:27319982 MGI:5881987 NCBI chrNW_004936541:4,260,635...4,268,409 JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated ISO RGD PMID:19188494 RGD:9999194 NCBI chrNW_004936710:1,546,027...1,551,685 JBrowse link
G Luc7l3 LUC7 like 3 pre-mRNA splicing factor ISO (PMID:10631324) UniProtKB PMID:10631324 NCBI chrNW_004936490:10,980,398...11,011,671 JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 ISO (MGI:3522407|PMID:15342650) MGI PMID:15342650 MGI:3522407 NCBI chrNW_004936497:9,512,350...9,619,250 JBrowse link
G Mecp2 methyl-CpG binding protein 2 ISO (MGI:3522407|PMID:15342650) MGI PMID:15342650 MGI:3522407 NCBI chrNW_004936809:902,938...967,771 JBrowse link
G Mettl14 methyltransferase like 14 ISO (PMID:27281194), (PMID:27373337), (PMID:27627798) UniProtKB PMID:27281194 PMID:27373337 PMID:27627798 NCBI chrNW_004936869:568,324...589,972 JBrowse link
G Mettl3 methyltransferase like 3 ISO (PMID:27281194), (PMID:27373337), (PMID:30559377) UniProt PMID:27281194 PMID:27373337 PMID:30559377 NCBI chrNW_004936880:646,835...661,312 JBrowse link
G Mvk mevalonate kinase ISO RGD PMID:16263716 RGD:1600527 NCBI chrNW_004936769:1,274,595...1,295,186 JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO (PMID:18816594) UniProtKB PMID:18816594 NCBI chrNW_004936470:20,480,844...20,485,955 JBrowse link
G Nanos2 nanos C2HC-type zinc finger 2 ISO (MGI:5429829|PMID:22190708) MGI PMID:22190708 MGI:5429829 NCBI chrNW_004936706:2,232,265...2,232,657 JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 ISO (PMID:26382858) UniProtKB PMID:26382858 NCBI chrNW_004936833:920,683...928,047 JBrowse link
G Ncbp3 nuclear cap binding subunit 3 ISO (PMID:26382858) UniProtKB PMID:26382858 NCBI chrNW_004936677:460,237...493,634 JBrowse link
G Noct nocturnin ISO (MGI:4837993|PMID:20685873) UniProt PMID:20685873 MGI:4837993 NCBI chrNW_004936535:8,504,518...8,509,376 JBrowse link
G Nova1 NOVA alternative splicing regulator 1 ISO (MGI:1353882|PMID:10719891) MGI PMID:10719891 MGI:1353882 NCBI chrNW_004936494:1,720,030...1,853,177 JBrowse link
G Nsrp1 nuclear speckle splicing regulatory protein 1 ISO (PMID:21296756) UniProtKB PMID:21296756 NCBI chrNW_004936538:6,138,993...6,184,730 JBrowse link
G Nudt21 nudix hydrolase 21 ISO (PMID:21295486) UniProtKB PMID:21295486 NCBI chrNW_004936475:8,739,992...8,759,165 JBrowse link
G Nup98 nucleoporin 98 and 96 precursor ISO (PMID:28221134) UniProtKB PMID:28221134 NCBI chrNW_004936498:1,112,724...1,219,790 JBrowse link
G Nxf1 nuclear RNA export factor 1 ISO (MGI:3575625|PMID:15820316) MGI PMID:15820316 MGI:3575625 NCBI chrNW_004936581:488,691...501,323 JBrowse link
G Nxf3 nuclear RNA export factor 3 ISO (MGI:3575625|PMID:15820316) MGI PMID:15820316 MGI:3575625 NCBI chrNW_004936547:8,066,413...8,084,756 JBrowse link
G Pabpc1 poly(A) binding protein cytoplasmic 1 ISO RGD PMID:11416190 RGD:633375 NCBI chrNW_004936470:42,628,890...42,670,311 JBrowse link
G Pabpc4 poly(A) binding protein cytoplasmic 4 ISO (MGI:5585232|PMID:24469397) MGI PMID:24469397 MGI:5585232 NCBI chrNW_004936474:21,453,244...21,468,059 JBrowse link
G Paip2 poly(A) binding protein interacting protein 2 ISO (MGI:5494875|PMID:23622065) MGI PMID:23622065 MGI:5494875 NCBI chrNW_004936531:8,431,950...8,453,980 JBrowse link
G Park7 Parkinsonism associated deglycase ISO (PMID:18626009) UniProtKB PMID:18626009 NCBI chrNW_004936623:2,422,780...2,436,817 JBrowse link
G Pcbp1 poly(rC) binding protein 1 ISO (PMID:14722620) BHF-UCL PMID:14722620 NCBI chrNW_004936491:14,280,616...14,282,148 JBrowse link
G Piwil1 piwi like RNA-mediated gene silencing 1 ISO (MGI:2180905|PMID:12062093), (MGI:3663970|PMID:16938833) UniProt PMID:12062093 PMID:16938833 MGI:2180905 MGI:3663970 NCBI chrNW_004936660:1,398,640...1,418,865 JBrowse link
G Piwil2 piwi like RNA-mediated gene silencing 2 ISO (MGI:3842880|PMID:19114715) UniProt PMID:19114715 MGI:3842880 NCBI chrNW_004936555:6,078,681...6,133,184 JBrowse link
G Pkm pyruvate kinase M1/2 ISO (MGI:6331015|PMID:28575669) UniProt PMID:28575669 MGI:6331015 NCBI chrNW_004936471:31,589,322...31,617,891 JBrowse link
G Ppie peptidylprolyl isomerase E ISO (PMID:18258190) UniProtKB PMID:18258190 NCBI chrNW_004936474:21,602,555...21,616,857 JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 ISO RGD PMID:19273590 RGD:9999430 NCBI chrNW_004936588:316,348...326,895 JBrowse link
G Ptbp2 polypyrimidine tract binding protein 2 ISO (MGI:1859428|PMID:10829067), (MGI:5430666|PMID:22802532) MGI PMID:10829067 PMID:22802532 MGI:1859428 MGI:5430666 NCBI chrNW_004936537:2,676,920...2,748,568 JBrowse link
G Purb purine rich element binding protein B ISO (MGI:3688338|PMID:12933792) UniProt PMID:12933792 MGI:3688338 NCBI chrNW_004936478:19,738,252...19,747,345 JBrowse link
G Qki QKI, KH domain containing RNA binding ISO (MGI:5316962|PMID:20631256) MGI PMID:20631256 MGI:5316962 NCBI chrNW_004936489:13,901,066...14,000,652 JBrowse link
G Rbfox2 RNA binding fox-1 homolog 2 ISO (MGI:5312167|PMID:22357600) MGI PMID:22357600 MGI:5312167 NCBI chrNW_004936492:4,624,013...4,826,715 JBrowse link
G Rbm15 RNA binding motif protein 15 ISO (PMID:26575292) UniProtKB PMID:26575292 NCBI chrNW_004936704:1,779,981...1,787,339 JBrowse link
G Rbm25 RNA binding motif protein 25 ISO (PMID:18663000) UniProtKB PMID:18663000 NCBI chrNW_004936488:2,395,451...2,458,367 JBrowse link
G Rbm38 RNA binding motif protein 38 ISO (PMID:17050675)
(MGI:4438547|PMID:19817877)
UniProtKB
UniProt
PMID:17050675 PMID:19817877 MGI:4438547 NCBI chrNW_004936530:227,266...249,285 JBrowse link
G Rbm5 RNA binding motif protein 5 ISO (PMID:18840686) UniProtKB PMID:18840686 NCBI chrNW_004936529:1,639,919...1,672,143 JBrowse link
G Rbm8a RNA binding motif protein 8A ISO (MGI:1889887|PMID:11030346) MGI PMID:11030346 MGI:1889887 NCBI chrNW_004936867:666,208...667,851 JBrowse link
G Rbmx RNA binding motif protein X-linked ISO (PMID:12165565), (PMID:12761049) UniProtKB PMID:12165565 PMID:12761049 NCBI chrNW_004936513:10,429,862...10,442,509 JBrowse link
G Rbpms2 RNA binding protein, mRNA processing factor 2 ISO (PMID:25064856) UniProtKB PMID:25064856 NCBI chrNW_004936471:25,103,766...25,128,289 JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 ISO (MGI:5486592|PMID:23583643) MGI PMID:23583643 MGI:5486592 NCBI chrNW_004936481:13,919,006...13,973,868 JBrowse link
G Rc3h2 ring finger and CCCH-type domains 2 ISO (MGI:5486592|PMID:23583643) MGI PMID:23583643 MGI:5486592 NCBI chrNW_004936487:11,341,663...11,393,275 JBrowse link
G Rida reactive intermediate imine deaminase A homolog ISO (PMID:30930054) UniProt PMID:30930054 NCBI chrNW_004936470:44,710,481...44,721,159 JBrowse link
G Rpl13a ribosomal protein L13a ISO (MGI:5475059|PMID:23460747) MGI PMID:23460747 MGI:5475059 NCBI chrNW_004936664:3,352,535...3,356,196 JBrowse link
G Rpl5 ribosomal protein L5 ISO RGD PMID:7338522 RGD:11040966 NCBI chrNW_004936537:6,341,961...6,344,831 JBrowse link
G Rpl6 ribosomal protein L6 ISO RGD PMID:7338522 RGD:11040966 NCBI chrNW_004936668:2,584,829...2,588,236 JBrowse link
G Rpl7 ribosomal protein L7 ISO (PMID:8441630) MGI PMID:8441630 NCBI chrNW_004936648:2,055,396...2,058,664 JBrowse link
G Rps13 ribosomal protein S13 ISO (PMID:17881366) UniProtKB PMID:17881366 NCBI chrNW_004936528:1,973,353...1,976,227 JBrowse link
G Rps2 ribosomal protein S2 ISO (PMID:18464793) UniProtKB PMID:18464793 NCBI chrNW_004936694:2,071,295...2,073,409 JBrowse link
G Rps26 ribosomal protein S26 ISO (PMID:15716004) UniProtKB PMID:15716004 NCBI chrNW_004936646:452,371...454,787 JBrowse link
G Rps3 ribosomal protein S3 ISO (PMID:18464793) UniProtKB PMID:18464793 NCBI chrNW_004936498:4,198,189...4,204,531 JBrowse link
G Rps3a ribosomal protein S3A ISO RGD PMID:7338522 RGD:11040966 NCBI chrNW_004936689:1,134,565...1,139,161 JBrowse link
G Rps5 ribosomal protein S5 ISO (PMID:18464793) UniProtKB PMID:18464793 NCBI chrNW_004937062:10,007...15,042 JBrowse link
G Rps6 ribosomal protein S6 ISO RGD PMID:7338522 RGD:11040966 NCBI chrNW_004936652:1,252,986...1,255,987 JBrowse link
G Samd4b sterile alpha motif domain containing 4B ISO (MGI:5703669|PMID:26609159) MGI PMID:26609159 MGI:5703669 NCBI chrNW_004936661:2,208,852...2,234,660 JBrowse link
G Sf3b6 splicing factor 3b subunit 6 ISO (PMID:16432215) UniProt PMID:16432215 NCBI chrNW_004936493:7,906,701...7,912,777 JBrowse link
G Slbp stem-loop binding protein ISO (PMID:16912046)
(MGI:3510058|PMID:15358832)
UniProtKB
MGI
PMID:15358832 PMID:16912046 MGI:3510058 NCBI chrNW_004936477:21,672,143...21,680,899 JBrowse link
G Slpi secretory leukocyte peptidase inhibitor ISO (PMID:2467900) UniProtKB PMID:2467900 NCBI chrNW_004936514:7,618,382...7,620,790 JBrowse link
G Srrm4 serine/arginine repetitive matrix 4 ISO (MGI:4414616|PMID:19737518) UniProt PMID:19737518 MGI:4414616 NCBI chrNW_004936668:1,523,232...1,668,591 JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 ISO (PMID:21984414) MGI PMID:21984414 NCBI chrNW_004936490:5,055,258...5,059,118 JBrowse link
G Tdrd7 tudor domain containing 7 ISO (PMID:21436445) UniProtKB PMID:21436445 NCBI chrNW_004936524:6,268,640...6,323,059 JBrowse link
G Thoc2 THO complex 2 ISO (MGI:5529717|PMID:24315442) MGI PMID:24315442 MGI:5529717 NCBI chrNW_004936479:6,855,405...6,972,256 JBrowse link
G Thoc5 THO complex 5 ISO (MGI:5529717|PMID:24315442) MGI PMID:24315442 MGI:5529717 NCBI chrNW_004936657:3,465,707...3,503,966 JBrowse link
G Tpr translocated promoter region, nuclear basket protein ISO (PMID:17897941) UniProtKB PMID:17897941 NCBI chrNW_004936481:4,050,693...4,111,682 JBrowse link
G Tra2b transformer 2 beta homolog ISO (PMID:12165565), (PMID:12761049) UniProtKB PMID:12165565 PMID:12761049 NCBI chrNW_004936578:3,949,820...3,970,462 JBrowse link
G Tsn translin ISO (MGI:3691712|PMID:15987823) MGI PMID:15987823 MGI:3691712 NCBI chrNW_004936469:48,974,836...48,984,097 JBrowse link
G Tyms thymidylate synthetase ISO Tp53 RGD PMID:9891091 RGD:5133445 NCBI chrNW_004936550:33,797...42,233 JBrowse link
G Upf3b UPF3B regulator of nonsense mediated mRNA decay ISO (PMID:11546873) UniProtKB PMID:11546873 NCBI chrNW_004936479:10,093,290...10,111,293 JBrowse link
G Xpo5 exportin 5 ISO (PMID:21297638) BHF-UCL PMID:21297638 NCBI chrNW_004936476:16,434,629...16,481,044 JBrowse link
G Ybx1 Y-box binding protein 1 ISO (MGI:6158172|PMID:29712925) UniProt PMID:29712925 MGI:6158172 NCBI chrNW_004936474:24,026,459...24,047,724 JBrowse link
G Ybx2 Y-box binding protein 2 ISO (MGI:2387497|PMID:12297523), (MGI:2654284|PMID:12648488), (MGI:3529406|PMID:15665108), (MGI:3696301|PMID:17035640) MGI PMID:12297523 PMID:12648488 PMID:15665108 PMID:17035640 MGI:2387497 MGI:2654284 MGI:3529406 MGI:3696301 NCBI chrNW_004936595:574,264...579,959 JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A ISO (PMID:19909337) UniProtKB PMID:19909337 NCBI chrNW_004936474:19,714,145...19,722,512 JBrowse link
G Zfp36 ZFP36 ring finger protein ISO (PMID:11782475), (PMID:15687258)
(MGI:1859531|PMID:10751406), (MGI:5788345|PMID:27193233), (MGI:5795824|PMID:17288565)
MGI
UniProt
PMID:10751406 PMID:11782475 PMID:15687258 PMID:17288565 PMID:27193233 MGI:1859531 MGI:5788345 MGI:5795824 NCBI chrNW_004936661:2,251,148...2,253,527 JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 ISO PMID:10751406
(MGI:5784968|PMID:24700863)
(PMID:15467755)
MGI
UniProt
PMID:10751406 PMID:15467755 PMID:24700863 MGI:5784968 RGD:1580602 NCBI chrNW_004936495:12,045,679...12,050,737 JBrowse link
iron-responsive element binding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aco1 aconitase 1 ISO (PMID:8041788)
(MGI:1928265|PMID:8262972), (MGI:3028434|PMID:14726953), (MGI:3521564|PMID:15604406), (MGI:3525896|PMID:15629469)
(PMID:1281544), (PMID:23891004)
UniProtKB
MGI
RGD
PMID:1281544 PMID:8041788 PMID:8262972 PMID:9092825 PMID:12672910 PMID:14726953 PMID:15086359 PMID:15604406 PMID:15629469 PMID:23891004 MGI:1928265 MGI:3028434 MGI:3521564 MGI:3525896 RGD:1642737 RGD:1642738 RGD:1642740 NCBI chrNW_004936524:1,081,672...1,134,971 JBrowse link
G Fech ferrochelatase ISO (MGI:76464|PMID:7575558) MGI PMID:7575558 MGI:76464 NCBI chrNW_004936497:6,755,626...6,788,568 JBrowse link
G Ireb2 iron responsive element binding protein 2 ISO (PMID:23891004)
(MGI:1928265|PMID:8262972), (MGI:3028434|PMID:14726953)
PMID:7665579
UniProtKB
MGI
UniProt
PMID:7665579 PMID:8262972 PMID:14726953 PMID:23891004 MGI:1928265 MGI:3028434 RGD:8554346 NCBI chrNW_004936471:36,547,552...36,601,327 JBrowse link
mRNA 3'-UTR AU-rich region binding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 ISO (MGI:5543770|PMID:18752464) UniProt PMID:18752464 MGI:5543770 NCBI chrNW_004936483:17,216,288...17,296,430 JBrowse link
G Cpeb2 cytoplasmic polyadenylation element binding protein 2 ISO (MGI:5543770|PMID:18752464) UniProt PMID:18752464 MGI:5543770 NCBI chrNW_004936477:12,727,325...12,798,733 JBrowse link
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 ISO (MGI:3703111|PMID:17024188) UniProt PMID:17024188 MGI:3703111 NCBI chrNW_004936601:2,470,021...2,616,451 JBrowse link
G Cpsf1 cleavage and polyadenylation specific factor 1 ISO (PMID:7590244) UniProtKB PMID:7590244 NCBI chrNW_004936470:7,848,846...7,857,291 JBrowse link
G Dhx36 DEAH-box helicase 36 ISO (PMID:14731398), (PMID:26489465) UniProt PMID:14731398 PMID:26489465 NCBI chrNW_004936519:1,946,684...1,987,036 JBrowse link
G Elavl1 ELAV like RNA binding protein 1 ISO (PMID:14731398), (PMID:16126846), (PMID:23056314), (PMID:26489465), (PMID:8626503)
(MGI:5795823|PMID:17971298), (MGI:5795824|PMID:17288565)
GO_Central PMID:8626503 PMID:14731398 PMID:16126846 PMID:17288565 PMID:17971298 PMID:23056314 PMID:26489465 MGI:5795823 MGI:5795824 NCBI chrNW_004936588:4,931,665...4,959,032 JBrowse link
G Elavl3 ELAV like RNA binding protein 3 ISO (PMID:10710437)
(MGI:4359584|PMID:10734193)
GO_Central PMID:10710437 PMID:10734193 MGI:4359584 NCBI chrNW_004936659:1,514,632...1,531,486 JBrowse link
G Elavl4 ELAV like RNA binding protein 4 ISO (PMID:10710437), (PMID:12034726), (PMID:17234598) GO_Central PMID:10710437 PMID:12034726 PMID:17234598 NCBI chrNW_004936522:10,349,684...10,435,963 JBrowse link
G Exosc4 exosome component 4 ISO (PMID:16912217) GO_Central PMID:16912217 NCBI chrNW_004936470:8,097,218...8,099,319 JBrowse link
G Exosc8 exosome component 8 ISO (PMID:16912217) GO_Central PMID:16912217 NCBI chrNW_004936472:31,112,733...31,115,639 JBrowse link
G Exosc9 exosome component 9 ISO (PMID:11782436) GO_Central PMID:11782436 NCBI chrNW_004936662:1,062,461...1,073,425 JBrowse link
G Hnrnpa0 heterogeneous nuclear ribonucleoprotein A0 ISO (PMID:20932473)
(MGI:5306322|PMID:12456657)
GO_Central PMID:12456657 PMID:20932473 MGI:5306322 NCBI chrNW_004936597:4,712,201...4,714,949 JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D ISO RGD PMID:16113063 RGD:10042966 NCBI chrNW_004936738:2,096,370...2,115,135 JBrowse link
G Ilf3 interleukin enhancer binding factor 3 ISO (PMID:14731398) GO_Central PMID:14731398 NCBI chrNW_004936659:903,690...940,024 JBrowse link
G Khsrp KH-type splicing regulatory protein ISO (PMID:16126846) UniProtKB PMID:16126846 NCBI chrNW_004936588:3,764,401...3,774,492 JBrowse link
G Mex3d mex-3 RNA binding family member D ISO (PMID:14769789) BHF-UCL PMID:14769789 NCBI chrNW_004936588:850,049...858,318 JBrowse link
G Nudt21 nudix hydrolase 21 ISO (PMID:20479262), (PMID:21295486) UniProt PMID:20479262 PMID:21295486 NCBI chrNW_004936475:8,739,992...8,759,165 JBrowse link
G Rbm24 RNA binding motif protein 24 ISO (PMID:24356969) UniProtKB PMID:24356969 NCBI chrNW_004936552:3,291,727...3,304,332 JBrowse link
G Rbms3 RNA binding motif single stranded interacting protein 3 ISO (PMID:10675610) UniProtKB PMID:10675610 NCBI chrNW_004936473:20,169,383...20,828,355 JBrowse link
G Tia1 TIA1 cytotoxic granule associated RNA binding protein ISO (MGI:3037090|PMID:10921895) MGI PMID:10921895 MGI:3037090 NCBI chrNW_004936491:14,381,107...14,411,931 JBrowse link
G Tial1 TIA1 cytotoxic granule associated RNA binding protein like 1 ISO (MGI:3037090|PMID:10921895) MGI PMID:10921895 MGI:3037090 NCBI chrNW_004936486:8,925,819...8,947,872 JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A ISO (MGI:3842851|PMID:19322177) UniProt PMID:19322177 MGI:3842851 NCBI chrNW_004936474:19,714,145...19,722,512 JBrowse link
G Zfp36 ZFP36 ring finger protein ISO (PMID:21784977)
(MGI:3589099|PMID:15814898), (MGI:4457258|PMID:10330172), (MGI:4457825|PMID:20410487), (MGI:5784976|PMID:22701344), (MGI:5784995|PMID:11533235), (MGI:5795819|PMID:20595389), (MGI:5795823|PMID:17971298), (MGI:5795824|PMID:17288565)
(PMID:10330172), (PMID:12748283), (PMID:15014438), (PMID:15187101), (PMID:15634918), (PMID:15766526), (PMID:20221403), (PMID:20702587), (PMID:25038453), (PMID:9703499)
UniProt
MGI
GO_Central
PMID:9703499 PMID:10330172 PMID:11533235 PMID:12748283 PMID:15014438 PMID:15187101 PMID:15634918 PMID:15766526 PMID:15814898 PMID:17288565 PMID:17971298 PMID:20221403 PMID:20410487 PMID:20595389 PMID:20702587 PMID:21784977 PMID:22701344 PMID:25038453 MGI:3589099 MGI:4457258 MGI:4457825 MGI:5784976 MGI:5784995 MGI:5795819 MGI:5795823 MGI:5795824 NCBI chrNW_004936661:2,251,148...2,253,527 JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 ISO (PMID:12198173), (PMID:15467755), (PMID:15538381), (PMID:18326031), (PMID:19179481), (PMID:20702587), (PMID:21832157), (PMID:24700863), (PMID:25014217), (PMID:25106868), (PMID:26542173)
(MGI:4818820|PMID:20622884), (MGI:5784967|PMID:24733888), (MGI:5784976|PMID:22701344)
(MGI:5779430|PMID:27102483)
PMID:12748283
UniProtKB
UniProt
RGD
PMID:10751406 PMID:12198173 PMID:12748283 PMID:15467755 PMID:15538381 PMID:18326031 PMID:19179481 PMID:20622884 PMID:20702587 PMID:21832157 PMID:22701344 PMID:24700863 PMID:24733888 PMID:25014217 PMID:25106868 PMID:26542173 PMID:27102483 MGI:4818820 MGI:5779430 MGI:5784967 MGI:5784976 RGD:11344945 RGD:1580602 NCBI chrNW_004936495:12,045,679...12,050,737 JBrowse link
G Zfp36l2 ZFP36 ring finger protein like 2 ISO (PMID:20506496), (PMID:25106868)
(MGI:4818820|PMID:20622884), (MGI:5320815|PMID:22367205), (MGI:5500826|PMID:23748442), (MGI:5784976|PMID:22701344)
GO_Central
UniProt
PMID:20506496 PMID:20622884 PMID:22367205 PMID:22701344 PMID:23748442 PMID:25106868 MGI:4818820 MGI:5320815 MGI:5500826 MGI:5784976 NCBI chrNW_004936508:8,617,185...8,620,823 JBrowse link
mRNA 3'-UTR binding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angel2 angel homolog 2 ISO (PMID:22547059) HGNC PMID:22547059 NCBI chrNW_004936557:605,609...621,421 JBrowse link
G Auh AU RNA binding methylglutaconyl-CoA hydratase ISO (PMID:7892223) UniProtKB PMID:7892223 NCBI chrNW_004936796:160,335...302,458 JBrowse link
G Carhsp1 calcium regulated heat stable protein 1 ISO (PMID:21078874) UniProtKB PMID:21078874 NCBI chrNW_004936530:7,652,560...7,662,598 JBrowse link
G Cct5 chaperonin containing TCP1 subunit 5 ISO (PMID:16213212) CAFA PMID:16213212 NCBI chrNW_004936643:2,354,799...2,368,048 JBrowse link
G Celf1 CUGBP Elav-like family member 1 ISO (PMID:30508596) ARUK-UCL PMID:30508596 RGD:38501076 NCBI chrNW_004936562:1,699,774...1,785,285 JBrowse link
G Celf2 CUGBP Elav-like family member 2 ISO PMID:30508596 ARUK-UCL PMID:30508596 RGD:38501076 NCBI chrNW_004936484:3,904,726...4,401,560 JBrowse link
G Cirbp cold inducible RNA binding protein ISO (PMID:11574538), (PMID:16513844) UniProtKB PMID:11574538 PMID:16513844 NCBI chrNW_004936588:636,041...639,564 JBrowse link
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 ISO RGD PMID:20603120 RGD:9685150 NCBI chrNW_004936483:17,216,288...17,296,430 JBrowse link
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 ISO (PMID:22711986)
(MGI:5300629|PMID:22153079), (MGI:5432966|PMID:22711986), (MGI:5521401|PMID:24155305)
UniProtKB
UniProt
PMID:22153079 PMID:22711986 PMID:24155305 MGI:5300629 MGI:5432966 MGI:5521401 NCBI chrNW_004936601:2,470,021...2,616,451 JBrowse link
G Cryz crystallin zeta ISO (PMID:17497241) UniProtKB
RGD
PMID:12684230 PMID:17497241 RGD:1601355 NCBI chrNW_004936571:2,002,388...2,033,423 JBrowse link
G Dazl deleted in azoospermia like ISO (MGI:2157295|PMID:11804965) MGI PMID:11804965 MGI:2157295 NCBI chrNW_004936473:9,392,079...9,436,725 JBrowse link
G Ddx5 DEAD-box helicase 5 ISO (PMID:23788676) UniProtKB PMID:23788676 NCBI chrNW_004936541:5,005,211...5,013,439 JBrowse link
G Dhx36 DEAH-box helicase 36 ISO (PMID:24369427) UniProt PMID:24369427 NCBI chrNW_004936519:1,946,684...1,987,036 JBrowse link
G Dnd1 DND microRNA-mediated repression inhibitor 1 ISO (PMID:18155131) UniProt PMID:18155131 NCBI chrNW_004936531:9,607,678...9,610,245 JBrowse link
G Elavl1 ELAV like RNA binding protein 1 ISO (PMID:26595526)
(MGI:5559905|PMID:24394384)
PMID:27193233
UniProtKB
UniProt
RGD
PMID:12234802 PMID:24394384 PMID:26595526 PMID:27193233 MGI:5559905 RGD:11344948 RGD:625662 NCBI chrNW_004936588:4,931,665...4,959,032 JBrowse link
G Elavl4 ELAV like RNA binding protein 4 ISO (PMID:12468554), (PMID:18218628) RGD
UniProt
PMID:12468554 PMID:18218628 PMID:22736542 RGD:9586719 NCBI chrNW_004936522:10,349,684...10,435,963 JBrowse link
G Fmr1 FMRP translational regulator 1 ISO (PMID:17417632)
(MGI:2684495|PMID:14613971), (MGI:5767073|PMID:11376146)
UniProtKB
UniProt
PMID:11376146 PMID:14613971 PMID:17417632 MGI:2684495 MGI:5767073 NCBI chrNW_004936513:1,290,038...1,327,850 JBrowse link
G Fus FUS RNA binding protein ISO (MGI:5892207|PMID:27378374) MGI PMID:27378374 MGI:5892207 NCBI chrNW_004936501:13,529,732...13,541,102 JBrowse link
G Fxr1 FMR1 autosomal homolog 1 ISO (MGI:3573966|PMID:15548538) MGI PMID:15548538 MGI:3573966 NCBI chrNW_004936566:2,354,301...2,425,140 JBrowse link
G Gemin5 gem nuclear organelle associated protein 5 ISO (PMID:25911097)
(MGI:5819332|PMID:25911097)
UniProtKB
UniProt
PMID:25911097 MGI:5819332 NCBI chrNW_004936515:7,923,113...7,971,507 JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 ISO RGD PMID:11723238 RGD:10045969 NCBI chrNW_004936512:11,481,017...11,487,737 JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 ISO PMID:9578590
(PMID:10567417)
UniProt
UniProtKB
PMID:9578590 PMID:10567417 RGD:9685424 RGD:9685477 NCBI chrNW_004936478:2,970,261...2,980,277 JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C ISO (PMID:16010978) UniProtKB PMID:16010978 NCBI chrNW_004936880:368,041...425,967 JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:15485813 RGD:10002778 NCBI chrNW_004936828:827,660...839,088 JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L ISO RGD PMID:15798208 RGD:9854643 NCBI chrNW_004936661:1,793,791...1,806,564 JBrowse link
G Hnrnpr heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:15798208 RGD:9854643 NCBI chrNW_004936474:8,531,434...8,567,734 JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U ISO (PMID:17174306) UniProtKB PMID:17174306 NCBI chrNW_004936526:6,014,745...6,022,213 JBrowse link
G Igf2bp1 insulin like growth factor 2 mRNA binding protein 1 ISO (PMID:20080952) RGD
UniProtKB
PMID:14614102 PMID:20080952 RGD:1299544 NCBI chrNW_004936490:12,430,343...12,468,794 JBrowse link
G Igf2bp2 insulin like growth factor 2 mRNA binding protein 2 ISO (PMID:20080952) UniProtKB PMID:20080952 NCBI chrNW_004936578:4,070,997...4,222,661 JBrowse link
G Igf2bp3 insulin like growth factor 2 mRNA binding protein 3 ISO (PMID:20080952) UniProtKB PMID:20080952 NCBI chrNW_004936478:456,369...595,705 JBrowse link
G Khsrp KH-type splicing regulatory protein ISO RGD PMID:12358751 RGD:724414 NCBI chrNW_004936588:3,764,401...3,774,492 JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator ISO (PMID:23711370), (PMID:26001795) FlyBase PMID:23711370 PMID:26001795 NCBI chrNW_004936515:8,039,887...8,125,006 JBrowse link
G Larp4 La ribonucleoprotein 4 ISO (PMID:26001795) FlyBase PMID:26001795 NCBI chrNW_004936512:8,024,121...8,093,306 JBrowse link
G Larp4b La ribonucleoprotein 4B ISO (PMID:26001795) FlyBase PMID:26001795 NCBI chrNW_004936484:13,238,456...13,302,962 JBrowse link
G Nhp2 NHP2 ribonucleoprotein ISO RGD PMID:15044956 RGD:10766448 NCBI chrNW_004936647:520,542...525,226 JBrowse link
G Nova1 NOVA alternative splicing regulator 1 ISO (MGI:5892207|PMID:27378374) MGI PMID:27378374 MGI:5892207 NCBI chrNW_004936494:1,720,030...1,853,177 JBrowse link
G Pabpc1 poly(A) binding protein cytoplasmic 1 ISO (PMID:16126846) UniProtKB PMID:16126846 NCBI chrNW_004936470:42,628,890...42,670,311 JBrowse link
G Pcbp4 poly(rC) binding protein 4 ISO (PMID:20817677) MGI PMID:20817677 NCBI chrNW_004936529:3,304,171...3,308,422 JBrowse link
G Pum1 pumilio RNA binding family member 1 ISO (PMID:18776931), (PMID:20818387), (PMID:21572425), (PMID:25768905)
(MGI:5315177|PMID:22342750), (MGI:5640888|PMID:25768905)
UniProtKB
UniProt
PMID:18776931 PMID:20818387 PMID:21572425 PMID:22342750 PMID:25768905 MGI:5315177 MGI:5640888 NCBI chrNW_004936474:14,243,325...14,363,461 JBrowse link
G Pum2 pumilio RNA binding family member 2 ISO (PMID:18776931) UniProtKB PMID:18776931 NCBI chrNW_004936493:11,067,318...11,154,133 JBrowse link
G Rbfox1 RNA binding fox-1 homolog 1 ISO (MGI:5892207|PMID:27378374) MGI PMID:27378374 MGI:5892207 NCBI chrNW_004936530:5,259,612...6,843,668 JBrowse link
G Rbm24 RNA binding motif protein 24 ISO (PMID:24375645), (PMID:29358667)
(MGI:4999688|PMID:20977548)
UniProtKB
UniProt
PMID:20977548 PMID:24375645 PMID:29358667 MGI:4999688 NCBI chrNW_004936552:3,291,727...3,304,332 JBrowse link
G Rbm38 RNA binding motif protein 38 ISO (PMID:17050675) UniProtKB PMID:17050675 NCBI chrNW_004936530:227,266...249,285 JBrowse link
G Rbms3 RNA binding motif single stranded interacting protein 3 ISO (MGI:5501019|PMID:22372950) MGI PMID:22372950 MGI:5501019 NCBI chrNW_004936473:20,169,383...20,828,355 JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 ISO (MGI:4819285|PMID:20639877), (MGI:5706859|PMID:26000482), (MGI:5751631|PMID:26255671) BHF-UCL PMID:20639877 PMID:26000482 PMID:26255671 MGI:4819285 MGI:5706859 MGI:5751631 NCBI chrNW_004936481:13,919,006...13,973,868 JBrowse link
G Rnf20 ring finger protein 20 ISO (PMID:19575011) UniProtKB PMID:19575011 NCBI chrNW_004936524:9,690,611...9,715,579 JBrowse link
G Rnf40 ring finger protein 40 ISO (PMID:19575011) UniProtKB PMID:19575011 NCBI chrNW_004936501:13,154,963...13,167,211 JBrowse link
G Rnps1 RNA binding protein with serine rich domain 1 ISO (PMID:11546874) UniProtKB PMID:11546874 NCBI chrNW_004936694:1,784,396...1,794,269 JBrowse link
G Rpl5 ribosomal protein L5 ISO (PMID:16213212) CAFA PMID:16213212 NCBI chrNW_004936537:6,341,961...6,344,831 JBrowse link
G Rps7 ribosomal protein S7 ISO (PMID:16213212) CAFA PMID:16213212 NCBI chrNW_004936532:1,734,993...1,740,202 JBrowse link
G Rsl1d1 ribosomal L1 domain containing 1 ISO (PMID:16213212) CAFA PMID:16213212 NCBI chrNW_004936530:9,613,256...9,622,005 JBrowse link
G Secisbp2 SECIS binding protein 2 ISO (PMID:16962588), (PMID:17332014) RGD
UniProtKB
PMID:11238886 PMID:16962588 PMID:17332014 RGD:628439 NCBI chrNW_004936780:264,366...300,999 JBrowse link
G Serbp1 SERPINE1 mRNA binding protein 1 ISO (PMID:11001948) HGNC PMID:11001948 NCBI chrNW_004936591:4,214,770...4,231,973 JBrowse link
G Syncrip synaptotagmin binding cytoplasmic RNA interacting protein ISO RGD PMID:15798208 RGD:9854643 NCBI chrNW_004936510:5,643,072...5,672,258 JBrowse link
G Taf15 TATA-box binding protein associated factor 15 ISO (MGI:5892207|PMID:27378374) MGI PMID:27378374 MGI:5892207 NCBI chrNW_004936490:199,226...230,190 JBrowse link
G Tardbp TAR DNA binding protein ISO (PMID:17481916) BHF-UCL PMID:17481916 NCBI chrNW_004936474:90,813...103,713 JBrowse link
G Tp53 tumor protein p53 ISO (PMID:16213212) CAFA PMID:16213212 NCBI chrNW_004936595:919,807...935,367 JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific ISO (PMID:21102410) UniProtKB PMID:21102410 NCBI chrNW_004936581:665,751...691,448 JBrowse link
G Utp23 UTP23 small subunit processome component ISO (PMID:16213212) CAFA PMID:16213212 NCBI chrNW_004936470:29,489,354...29,495,171 JBrowse link
G Ybx2 Y-box binding protein 2 ISO (MGI:1930944|PMID:10772793) MGI PMID:10772793 MGI:1930944 NCBI chrNW_004936595:574,264...579,959 JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A ISO (MGI:5706859|PMID:26000482), (MGI:5706909|PMID:23185455), (MGI:5751631|PMID:26255671) UniProt PMID:23185455 PMID:26000482 PMID:26255671 MGI:5706859 MGI:5706909 MGI:5751631 NCBI chrNW_004936474:19,714,145...19,722,512 JBrowse link
G Zfp36 ZFP36 ring finger protein ISO PMID:27193233 UniProt PMID:27193233 RGD:11344948 NCBI chrNW_004936661:2,251,148...2,253,527 JBrowse link
G Znf385a zinc finger protein 385A ISO (MGI:3610775|PMID:16286649) MGI PMID:16286649 MGI:3610775 NCBI chrNW_004936512:11,562,635...11,585,026 JBrowse link
mRNA 5'-UTR binding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aco1 aconitase 1 ISO RGD PMID:9092825 RGD:1642740 NCBI chrNW_004936524:1,081,672...1,134,971 JBrowse link
G Cct5 chaperonin containing TCP1 subunit 5 ISO (PMID:16213212) CAFA PMID:16213212 NCBI chrNW_004936643:2,354,799...2,368,048 JBrowse link
G Celf1 CUGBP Elav-like family member 1 ISO (MGI:6405956|PMID:32245946) MGI PMID:32245946 MGI:6405956 NCBI chrNW_004936562:1,699,774...1,785,285 JBrowse link
G Ddx3x DEAD-box helicase 3 X-linked ISO (PMID:22872150) UniProtKB PMID:22872150 NCBI chrNW_004936502:7,770,896...7,820,555 JBrowse link
G Dhx36 DEAH-box helicase 36 ISO (PMID:26489465) UniProt PMID:26489465 NCBI chrNW_004936519:1,946,684...1,987,036 JBrowse link
G Fmr1 FMRP translational regulator 1 ISO (PMID:19166269) UniProtKB PMID:19166269 NCBI chrNW_004936513:1,290,038...1,327,850 JBrowse link
G Gnl3 G protein nucleolar 3 ISO (PMID:16213212) CAFA PMID:16213212 NCBI chrNW_004936473:3,476,436...3,483,868 JBrowse link
G Igf2bp1 insulin like growth factor 2 mRNA binding protein 1 ISO (PMID:9891060) BHF-UCL PMID:9891060 NCBI chrNW_004936490:12,430,343...12,468,794 JBrowse link
G Igf2bp2 insulin like growth factor 2 mRNA binding protein 2 ISO (PMID:9891060) BHF-UCL PMID:9891060 NCBI chrNW_004936578:4,070,997...4,222,661 JBrowse link
G Igf2bp3 insulin like growth factor 2 mRNA binding protein 3 ISO (PMID:9891060) BHF-UCL PMID:9891060 NCBI chrNW_004936478:456,369...595,705 JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator ISO (PMID:25940091)
(PMID:24532714), (PMID:26206669), (PMID:28379136), (PMID:28673543)
UniProtKB
UniProt
PMID:24532714 PMID:25940091 PMID:26206669 PMID:28379136 PMID:28673543 NCBI chrNW_004936515:8,039,887...8,125,006 JBrowse link
G Larp6 La ribonucleoprotein 6, translational regulator ISO (PMID:21746880)
(PMID:20603131), (PMID:22190748)
UniProtKB PMID:20603131 PMID:21746880 PMID:22190748 NCBI chrNW_004936471:30,369,912...30,387,272 JBrowse link
G Myh10 myosin heavy chain 10 ISO (PMID:20603131) UniProtKB PMID:20603131 NCBI chrNW_004936595:1,697,283...1,832,571 JBrowse link
G Rara retinoic acid receptor alpha ISO RGD PMID:19073915 RGD:2314253 NCBI chrNW_004936490:15,376,217...15,420,638 JBrowse link
G Rpl26 ribosomal protein L26 ISO (PMID:16213212) CAFA PMID:16213212 NCBI chrNW_004936595:1,603,913...1,609,125 JBrowse link
G Rpl5 ribosomal protein L5 ISO (PMID:16213212) CAFA PMID:16213212 NCBI chrNW_004936537:6,341,961...6,344,831 JBrowse link
G Rps13 ribosomal protein S13 ISO (PMID:16213212) CAFA PMID:16213212 NCBI chrNW_004936528:1,973,353...1,976,227 JBrowse link
G Rps14 ribosomal protein S14 ISO (PMID:7867928) UniProtKB PMID:7867928 NCBI chrNW_004936504:4,495,930...4,500,843 JBrowse link
G Rps3a ribosomal protein S3A ISO (PMID:16213212) CAFA PMID:16213212 NCBI chrNW_004936689:1,134,565...1,139,161 JBrowse link
G Rps7 ribosomal protein S7 ISO (PMID:16213212) CAFA PMID:16213212 NCBI chrNW_004936532:1,734,993...1,740,202 JBrowse link
G Rsl1d1 ribosomal L1 domain containing 1 ISO (PMID:16213212) CAFA PMID:16213212 NCBI chrNW_004936530:9,613,256...9,622,005 JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 ISO (PMID:10995219) CAFA PMID:10995219 NCBI chrNW_004936741:1,849,239...1,877,724 JBrowse link
G Syncrip synaptotagmin binding cytoplasmic RNA interacting protein ISO RGD PMID:17403780 RGD:10059417 NCBI chrNW_004936510:5,643,072...5,672,258 JBrowse link
G Utp23 UTP23 small subunit processome component ISO (PMID:16213212) CAFA PMID:16213212 NCBI chrNW_004936470:29,489,354...29,495,171 JBrowse link
mRNA cap binding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 ISO (PMID:23409027) ParkinsonsUK-UCL PMID:23409027 NCBI chrNW_004936470:10,641,109...10,690,587 JBrowse link
G Eif3d eukaryotic translation initiation factor 3 subunit D ISO (PMID:27462815) UniProtKB PMID:27462815 NCBI chrNW_004936492:4,256,210...4,270,469 JBrowse link
mRNA CDS binding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 ISO RGD PMID:16980303 RGD:10058976 NCBI chrNW_004936478:2,970,261...2,980,277 JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:16980303 RGD:10058976 NCBI chrNW_004936828:827,660...839,088 JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L ISO RGD PMID:16980303 RGD:10058976 NCBI chrNW_004936661:1,793,791...1,806,564 JBrowse link
G Rbm24 RNA binding motif protein 24 ISO (PMID:29104163) UniProtKB PMID:29104163 NCBI chrNW_004936552:3,291,727...3,304,332 JBrowse link
G Unk unk zinc finger ISO (PMID:25737280)
(MGI:5630004|PMID:25737280)
GO_Central
MGI
PMID:25737280 MGI:5630004 NCBI chrNW_004936594:967,386...1,005,085 JBrowse link
selenocysteine insertion sequence binding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eefsec eukaryotic elongation factor, selenocysteine-tRNA specific ISO (MGI:5467162|PMID:22992746) MGI PMID:22992746 MGI:5467162 NCBI chrNW_004936798:448,114...512,234 JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 ISO RGD PMID:21685449 RGD:10044260 NCBI chrNW_004936594:4,148,401...4,160,290 JBrowse link
G LOC101963795 60S ribosomal protein L30 ISO RGD PMID:15821744 RGD:11038818 NCBI chrNW_004936493:7,942,669...7,943,133 JBrowse link
G Secisbp2 SECIS binding protein 2 ISO (MGI:5467162|PMID:22992746) RGD
MGI
PMID:15821744 PMID:22992746 MGI:5467162 RGD:11038818 NCBI chrNW_004936780:264,366...300,999 JBrowse link
sequence-specific mRNA binding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhfr dihydrofolate reductase ISO (PMID:8490020) CAFA PMID:8490020 NCBI chrNW_004936469:67,962...83,116 JBrowse link
G Dhx9 DExH-box helicase 9 ISO (PMID:11402034), (PMID:9162007) UniProtKB PMID:9162007 PMID:11402034 NCBI chrNW_004936481:6,896,487...6,934,938 JBrowse link
G Etf1 eukaryotic translation termination factor 1 ISO (PMID:12909007) CAFA PMID:12909007 NCBI chrNW_004936531:7,665,246...7,693,563 JBrowse link
G Fmr1 FMRP translational regulator 1 ISO (PMID:12927206), (PMID:23235829) UniProtKB PMID:12927206 PMID:23235829 NCBI chrNW_004936513:1,290,038...1,327,850 JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 ISO RGD PMID:11886857 RGD:625404 NCBI chrNW_004936512:11,481,017...11,487,737 JBrowse link
G Larp6 La ribonucleoprotein 6, translational regulator ISO (PMID:22190748) UniProtKB PMID:22190748 NCBI chrNW_004936471:30,369,912...30,387,272 JBrowse link
G Lin28a lin-28 homolog A ISO (MGI:5795796|PMID:26045559) UniProt PMID:26045559 MGI:5795796 NCBI chrNW_004936474:10,896,153...10,909,247 JBrowse link
G Mvk mevalonate kinase ISO PMID:14749336 CAFA PMID:14749336 RGD:12793000 NCBI chrNW_004936769:1,274,595...1,295,186 JBrowse link
G Rbm24 RNA binding motif protein 24 ISO (PMID:29358667) UniProtKB PMID:29358667 NCBI chrNW_004936552:3,291,727...3,304,332 JBrowse link
G Shfl shiftless antiviral inhibitor of ribosomal frameshifting ISO (PMID:30682371) UniProt PMID:30682371 NCBI chrNW_004936659:480,934...491,926 JBrowse link
G Srsf3 serine and arginine rich splicing factor 3 ISO RGD PMID:23233666 RGD:10059618 NCBI chrNW_004936476:22,790,411...22,799,498 JBrowse link
G Srsf4 serine and arginine rich splicing factor 4 ISO RGD PMID:23233666 RGD:10059618 NCBI chrNW_004936474:13,113,191...13,140,956 JBrowse link
G Ssb small RNA binding exonuclease protection factor La ISO (PMID:9154801) CAFA PMID:9154801 NCBI chrNW_004936509:286,397...295,779 JBrowse link
G Tyms thymidylate synthetase ISO (PMID:1924359) CAFA PMID:1924359 NCBI chrNW_004936550:33,797...42,233 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 14080
    binding 13352
      heterocyclic compound binding 2421
        nucleic acid binding 1806
          RNA binding 564
            mRNA binding 190
              iron-responsive element binding 3
              mRNA 3'-UTR binding + 78
              mRNA 5'-UTR binding 24
              mRNA CDS binding 5
              mRNA binding involved in posttranscriptional gene silencing 0
              mRNA cap binding 2
              selenocysteine insertion sequence binding 4
              sequence-specific mRNA binding 14
              triplet codon-amino acid adaptor activity + 0
paths to the root