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ONTOLOGY REPORT - ANNOTATIONS


Term:single-stranded DNA binding
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Accession:GO:0003697 term browser browse the term
Definition:Interacting selectively and non-covalently with single-stranded DNA.
Comment:Note that this term is restricted to those cases where the binding is to a single-stranded DNA molecule, not to one of the stands of double-stranded DNA.
Synonyms:exact_synonym: ssDNA binding
 alt_id: GO:0003698;   GO:0003699


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single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALYREF Aly/REF export factor ISO (MGI:1913121|PMID:10786854) MGI PMID:10786854 MGI:1913121 NCBI chr 9:398,207...402,787
Ensembl chr 9:399,072...402,721
JBrowse link
G ANXA1 annexin A1 contributes_to ISO RGD PMID:10548514, PMID:20655937 RGD:2306916, RGD:7421590 NCBI chr 1:84,744,159...84,763,011
Ensembl chr 1:84,744,163...84,763,011
JBrowse link
G APTX aprataxin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:50,111,003...50,155,937
Ensembl chr11:50,113,073...50,132,284
JBrowse link
G BLM BLM RecQ like helicase IEA Ensembl GO_REF:0000107 NCBI chr 3:53,408,120...53,506,728
Ensembl chr 3:53,408,217...53,473,146
JBrowse link
G BRCA2 BRCA2 DNA repair associated IEA Ensembl GO_REF:0000107 NCBI chr25:7,734,450...7,797,851
Ensembl chr25:7,734,453...7,797,815
JBrowse link
G CNBP CCHC-type zinc finger nucleic acid binding protein ISO RGD PMID:7788528 RGD:632384 NCBI chr20:2,860,915...2,929,307
Ensembl chr20:2,916,624...2,929,303
JBrowse link
G CRY2 cryptochrome circadian regulator 2 ISO (PMID:12627958) UniProtKB PMID:12627958 NCBI chr18:43,538,335...43,573,651
Ensembl chr18:43,539,612...43,573,875
JBrowse link
G CTC1 CST telomere replication complex component 1 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 5:33,033,474...33,055,004
Ensembl chr 5:33,033,596...33,055,142
JBrowse link
G DDX11 DEAD/H-box helicase 11 IEA Ensembl GO_REF:0000107 NCBI chr27:42,067,845...42,102,699
Ensembl chr27:42,067,898...42,105,870
JBrowse link
G DHX36 DEAH-box helicase 36 IEA Ensembl GO_REF:0000107 NCBI chr23:48,404,351...48,456,360
Ensembl chr23:48,407,316...48,456,654
JBrowse link
G DHX9 DExH-box helicase 9 IEA Ensembl GO_REF:0000107 NCBI chr 7:16,233,763...16,292,576
Ensembl chr 7:16,233,814...16,292,618
JBrowse link
G DMC1 DNA meiotic recombinase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:26,228,662...26,265,377
Ensembl chr10:26,230,428...26,264,820
JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:110,130,353...110,146,660
Ensembl chr 1:110,130,481...110,146,602
JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:29,193,192...29,226,935
Ensembl chr 6:29,196,421...29,226,887
JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease IEA InterPro GO_REF:0000002 NCBI chr22:52,339,011...52,372,618 JBrowse link
G FAM111A FAM111 trypsin like peptidase A ISO (PMID:32165630) UniProt PMID:32165630 NCBI chr18:37,584,326...37,595,316 JBrowse link
G FBH1 F-box DNA helicase 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:30,047,994...30,095,761
Ensembl chr 2:30,048,567...30,095,696
JBrowse link
G FUBP3 far upstream element binding protein 3 IEA Ensembl GO_REF:0000107 NCBI chr 9:53,317,955...53,370,040
Ensembl chr 9:53,317,438...53,370,112
JBrowse link
G HMCES 5-hydroxymethylcytosine binding, ES cell specific IEA Ensembl
InterPro
GO_REF:0000002, GO_REF:0000107 NCBI chr20:2,808,687...2,831,123
Ensembl chr20:2,808,689...2,830,462
JBrowse link
G HMGB1 high mobility group box 1 ISO RGD PMID:11024186 RGD:2316830 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
JBrowse link
G HMGB2 high mobility group box 2 ISS AgBase GO_REF:0000024 NCBI chr25:23,939,024...23,941,720
Ensembl chr25:23,939,027...23,941,606
JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 ISO (PMID:8521471) HGNC PMID:8521471 NCBI chr27:1,013,459...1,020,083
Ensembl chr27:1,015,868...1,019,891
JBrowse link
G HNRNPDL heterogeneous nuclear ribonucleoprotein D like ISO (PMID:9538234) UniProtKB PMID:9538234 NCBI chr32:6,401,266...6,408,006
Ensembl chr32:6,402,762...6,407,845
JBrowse link
G HNRNPK heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:15361071 RGD:10002777 NCBI chr 1:75,499,334...75,511,525
Ensembl chr 1:75,499,393...75,511,425
JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U IEA Ensembl GO_REF:0000107 NCBI chr 7:35,832,956...35,842,898
Ensembl chr 7:35,833,988...35,843,754
JBrowse link
G HROB homologous recombination factor with OB-fold IEA Ensembl GO_REF:0000107 NCBI chr 9:19,230,345...19,245,518
Ensembl chr 9:19,230,399...19,245,624
JBrowse link
G IGHM immunoglobulin heavy constant mu IEA Ensembl GO_REF:0000107 Ensembl chr 8:72,977,146...72,981,735 JBrowse link
G JCHAIN joining chain of multimeric IgA and IgM contributes_to ISO
IEA
(PMID:21786026) UniProtKB
Ensembl
PMID:21786026 GO_REF:0000107 NCBI chr13:59,962,604...59,970,812
Ensembl chr13:59,962,994...59,970,751
JBrowse link
G LOC100855532 single-stranded DNA-binding protein, mitochondrial IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:51,357,314...51,358,052 JBrowse link
G LONP1 lon peptidase 1, mitochondrial IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:54,312,678...54,334,142
Ensembl chr20:54,312,678...54,334,141
JBrowse link
G LRPPRC leucine rich pentatricopeptide repeat containing IEA Ensembl GO_REF:0000107 NCBI chr10:46,325,312...46,438,376
Ensembl chr10:46,327,223...46,438,342
JBrowse link
G MCM10 minichromosome maintenance 10 replication initiation factor IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 2:23,288,249...23,344,060
Ensembl chr 2:23,292,253...23,344,719
JBrowse link
G MCM2 minichromosome maintenance complex component 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:1,682,928...1,702,689
Ensembl chr20:1,682,886...1,702,366
JBrowse link
G MCM3 minichromosome maintenance complex component 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:19,924,017...19,945,576
Ensembl chr12:19,920,210...19,945,605
JBrowse link
G MCM4 minichromosome maintenance complex component 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr29:244,634...261,154
Ensembl chr29:244,656...260,991
JBrowse link
G MCM5 minichromosome maintenance complex component 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:28,721,421...28,738,457
Ensembl chr10:28,721,660...28,738,390
JBrowse link
G MCM6 minichromosome maintenance complex component 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:38,627,154...38,660,312
Ensembl chr19:38,627,183...38,660,280
JBrowse link
G MCM7 minichromosome maintenance complex component 7 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:9,492,654...9,499,846
Ensembl chr 6:9,492,573...9,499,855
JBrowse link
G MCM8 minichromosome maintenance 8 homologous recombination repair factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:15,850,602...15,893,452
Ensembl chr24:15,814,770...15,893,458
JBrowse link
G MCM9 minichromosome maintenance 9 homologous recombination repair factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:58,746,637...58,862,550
Ensembl chr 1:58,767,159...58,859,282
JBrowse link
G MCMDC2 minichromosome maintenance domain containing 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr29:16,424,088...16,462,094
Ensembl chr29:16,426,318...16,460,599
JBrowse link
G MEIOB meiosis specific with OB-fold IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 6:39,048,335...39,075,957
Ensembl chr 6:39,048,278...39,076,035
JBrowse link
G MLH1 mutL homolog 1 contributes_to IEA
ISO
(PMID:11809883) Ensembl
HGNC
PMID:11809883 GO_REF:0000107 NCBI chr23:6,889,108...6,938,117
Ensembl chr23:6,889,135...6,938,116
JBrowse link
G MSH2 mutS homolog 2 contributes_to IEA
ISO
(PMID:11809883) Ensembl
HGNC
PMID:11809883 GO_REF:0000107 NCBI chr10:49,517,448...49,594,001
Ensembl chr10:49,517,369...49,594,210
JBrowse link
G MSH3 mutS homolog 3 contributes_to IEA
ISO
(PMID:11809883) Ensembl
HGNC
PMID:11809883 GO_REF:0000107 NCBI chr 3:26,335,788...26,520,633
Ensembl chr 3:26,336,403...26,518,521
JBrowse link
G MYEF2 myelin expression factor 2 IEA InterPro GO_REF:0000002 NCBI chr30:14,399,747...14,447,113
Ensembl chr30:14,399,966...14,425,141
JBrowse link
G NABP1 nucleic acid binding protein 1 ISO (MGI:3692356|PMID:16533169) MGI PMID:16533169 MGI:3692356 NCBI chr37:2,157,357...2,163,812
Ensembl chr37:2,157,356...2,161,091
JBrowse link
G NABP2 nucleic acid binding protein 2 ISO (PMID:18449195), (PMID:19683501) UniProtKB PMID:18449195, PMID:19683501 NCBI chr10:546,964...551,360
Ensembl chr10:546,964...551,107
JBrowse link
G NCL nucleolin ISO RGD PMID:6311246 RGD:9693696 NCBI chr25:43,330,524...43,384,909
Ensembl chr25:43,330,799...43,384,258
JBrowse link
G NEIL3 nei like DNA glycosylase 3 IEA Ensembl GO_REF:0000107 NCBI chr16:52,383,585...52,472,398
Ensembl chr16:52,387,389...52,436,173
JBrowse link
G NME1 non-metastatic cells 1, protein (NM23A) expressed in ISO RGD PMID:12010125 RGD:633207 NCBI chr 9:26,990,336...26,998,895
Ensembl chr 9:26,990,469...26,998,955
JBrowse link
G NOL12 nucleolar protein 12 ISO RGD PMID:16430885 RGD:8553573 NCBI chr10:26,919,771...26,926,547 JBrowse link
G NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr38:2,157,109...2,188,543
Ensembl chr38:2,160,233...2,170,560
JBrowse link
G NUP35 nucleoporin 35 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr36:26,128,838...26,168,664
Ensembl chr36:26,135,065...26,168,298
JBrowse link
G PARK7 Parkinsonism associated deglycase NOT ISO (PMID:22683601) ParkinsonsUK-UCL PMID:22683601 NCBI chr 5:61,576,219...61,592,325
Ensembl chr 5:61,576,069...61,592,303
JBrowse link
G PCBP1 poly(rC) binding protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:68,686,278...68,687,916 JBrowse link
G PCBP2 poly(rC) binding protein 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:1,736,264...1,759,416 JBrowse link
G PMS2 PMS1 homolog 2, mismatch repair system component contributes_to IEA
ISO
(PMID:11809883) Ensembl
HGNC
PMID:11809883 GO_REF:0000107 NCBI chr 6:11,411,062...11,438,767
Ensembl chr 6:11,349,453...11,438,940
JBrowse link
G POLA1 DNA polymerase alpha 1, catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:20,227,808...20,537,893
Ensembl chr  X:20,227,886...20,537,902
JBrowse link
G POLR2D RNA polymerase II subunit D contributes_to IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:22,754,118...22,774,054
Ensembl chr19:22,754,141...22,774,231
JBrowse link
G POLR2G RNA polymerase II subunit G IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:53,916,431...53,919,724
Ensembl chr18:53,916,435...53,919,549
JBrowse link
G POLR2H RNA polymerase II, I and III subunit H IEA Ensembl GO_REF:0000107 NCBI chr34:17,240,604...17,244,907
Ensembl chr34:17,240,624...17,244,904
JBrowse link
G POLR3C RNA polymerase III subunit C IEA UniProt GO_REF:0000104 NCBI chr17:58,634,299...58,646,056
Ensembl chr17:58,636,244...58,645,838
JBrowse link
G POU4F1 POU class 4 homeobox 1 ISO (MGI:5795831|PMID:8621561) UniProt PMID:8621561 MGI:5795831 NCBI chr22:31,992,657...31,997,066 JBrowse link
G PTBP1 polypyrimidine tract binding protein 1 ISO RGD PMID:1561080 RGD:10045981 NCBI chr20:57,806,450...57,818,435
Ensembl chr20:57,807,826...57,818,359
JBrowse link
G PURA purine rich element binding protein A IEA Ensembl GO_REF:0000107 NCBI chr 2:35,325,630...35,345,366
Ensembl chr 2:35,330,902...35,332,835
JBrowse link
G PURB purine rich element binding protein B ISO PMID:12933792
(MGI:3688338|PMID:12933792)
HGNC
UniProt
PMID:12933792 MGI:3688338, RGD:1581942
G RAD18 RAD18 E3 ubiquitin protein ligase IEA InterPro GO_REF:0000002 NCBI chr20:9,163,322...9,271,224
Ensembl chr20:9,163,428...9,263,730
JBrowse link
G RAD51 RAD51 recombinase ISS
IBA
IEA
(PMID:21873635) UniProtKB
GO_Central
Ensembl
PMID:21873635 GO_REF:0000024, GO_REF:0000107 NCBI chr30:7,842,540...7,877,128
Ensembl chr30:7,842,540...7,877,606
JBrowse link
G RAD51AP1 RAD51 associated protein 1 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr27:40,303,935...40,341,666
Ensembl chr27:40,303,992...40,341,526
JBrowse link
G RAD51B RAD51 paralog B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:41,779,435...42,357,362
Ensembl chr 8:41,778,714...42,357,298
JBrowse link
G RAD51D RAD51 paralog D IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:38,242,178...38,259,788
Ensembl chr 9:38,222,051...38,365,621
JBrowse link
G RAD52 RAD52 homolog, DNA repair protein IEA Ensembl GO_REF:0000107 NCBI chr27:42,915,334...43,032,293
Ensembl chr27:42,915,634...42,951,323
JBrowse link
G RADX RPA1 related single stranded DNA binding protein, X-linked IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr  X:80,146,335...80,234,732
Ensembl chr  X:80,146,040...80,235,739
JBrowse link
G RBBP8 RB binding protein 8, endonuclease IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:65,218,288...65,319,696
Ensembl chr 7:65,218,297...65,297,099
JBrowse link
G REXO4 REX4 homolog, 3'-5' exonuclease IEA Ensembl GO_REF:0000107 NCBI chr 9:49,827,584...49,834,872
Ensembl chr 9:49,828,067...49,836,632
JBrowse link
G RNF138 ring finger protein 138 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:57,521,416...57,554,793
Ensembl chr 7:57,523,595...57,556,005
JBrowse link
G RPA1 replication protein A1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:45,958,566...46,034,850
Ensembl chr 9:45,958,619...46,034,328
JBrowse link
G RPA2 replication protein A2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:72,463,951...72,479,864
Ensembl chr 2:72,419,459...72,479,227
JBrowse link
G RPA3 replication protein A3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:23,230,447...23,234,554
Ensembl chr11:2,893,352...2,893,717
JBrowse link
G RSPH10B radial spoke head 10 homolog B IEA Ensembl GO_REF:0000107 NCBI chr 6:11,352,150...11,410,937
Ensembl chr 6:11,349,453...11,438,940
JBrowse link
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component IEA Ensembl GO_REF:0000107 NCBI chr30:8,468,001...8,524,712
Ensembl chr30:8,467,761...8,522,874
JBrowse link
G SAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 IEA Ensembl GO_REF:0000107 NCBI chr24:25,623,997...25,676,336
Ensembl chr24:25,626,134...25,680,902
JBrowse link
G SETMAR SET domain without mariner transposase fusion ISO (PMID:24573677) UniProtKB PMID:24573677 NCBI chr20:13,214,241...13,224,020
Ensembl chr20:13,214,241...13,224,020
JBrowse link
G SHOC1 shortage in chiasmata 1 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr11:66,283,093...66,359,674
Ensembl chr11:66,282,572...66,363,922
JBrowse link
G SMC2 structural maintenance of chromosomes 2 ISO (MGI:5014036|PMID:20139420) MGI PMID:20139420 MGI:5014036 NCBI chr11:60,091,728...60,155,295
Ensembl chr11:60,091,457...60,151,442
JBrowse link
G SMC4 structural maintenance of chromosomes 4 ISO (MGI:5014036|PMID:20139420) MGI PMID:20139420 MGI:5014036 NCBI chr34:26,455,630...26,495,392
Ensembl chr34:26,456,142...26,494,725
JBrowse link
G SPEN spen family transcriptional repressor ISO (MGI:1890122|PMID:10451362) MGI PMID:10451362 MGI:1890122 NCBI chr 2:81,683,824...81,775,904 JBrowse link
G SPRTN SprT-like N-terminal domain ISO (PMID:27871365), (PMID:32649882) UniProt PMID:27871365, PMID:32649882 NCBI chr 4:8,120,151...8,133,402
Ensembl chr 4:8,120,351...8,133,191
JBrowse link
G SSBP1 single stranded DNA binding protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:7,445,351...7,461,513
Ensembl chr16:7,451,444...7,461,464
JBrowse link
G SSBP2 single stranded DNA binding protein 2 IEA InterPro GO_REF:0000002 NCBI chr 3:25,616,750...25,900,991
Ensembl chr 3:25,616,824...25,900,501
JBrowse link
G SSBP4 single stranded DNA binding protein 4 IEA InterPro GO_REF:0000002 NCBI chr20:44,599,576...44,613,344
Ensembl chr20:44,598,920...44,613,266
JBrowse link
G STN1 STN1 subunit of CST complex IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:16,203,607...16,246,468
Ensembl chr28:16,204,073...16,246,058
JBrowse link
G SUB1 SUB1 regulator of transcription IEA Ensembl GO_REF:0000107 NCBI chr 4:74,931,105...74,951,707
Ensembl chr 4:74,933,620...74,951,573
JBrowse link
G SWSAP1 SWIM-type zinc finger 7 associated protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:49,951,633...49,953,281
Ensembl chr20:49,951,783...49,953,434
JBrowse link
G TDP1 tyrosyl-DNA phosphodiesterase 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 8:61,023,564...61,107,599
Ensembl chr 8:61,024,084...61,107,506
JBrowse link
G TDP2 tyrosyl-DNA phosphodiesterase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:22,693,203...22,707,054
Ensembl chr35:22,693,110...22,707,008
JBrowse link
G TEN1 TEN1 subunit of CST complex IEA InterPro GO_REF:0000002 NCBI chr 9:4,635,192...4,658,455
Ensembl chr 9:4,635,354...4,658,252
JBrowse link
G TOP1 DNA topoisomerase I IEA Ensembl GO_REF:0000107 NCBI chr24:29,075,267...29,166,733
Ensembl chr24:29,075,492...29,165,864
JBrowse link
G TOP3A DNA topoisomerase III alpha IEA Ensembl GO_REF:0000107 NCBI chr 5:41,262,820...41,290,101
Ensembl chr 5:41,263,017...41,290,100
JBrowse link
G TREX1 three prime repair exonuclease 1 IEA Ensembl GO_REF:0000107 NCBI chr20:40,624,845...40,626,840
Ensembl chr20:40,624,891...40,626,906
JBrowse link
G TSN translin contributes_to IEA
ISO
InterPro
RGD
PMID:9681436 GO_REF:0000002, RGD:634412 NCBI chr19:28,467,513...28,476,444
Ensembl chr19:28,469,463...28,476,313
JBrowse link
G TSNAX translin associated factor X contributes_to ISO RGD PMID:9681436 RGD:634412 NCBI chr 4:7,937,622...7,968,014
Ensembl chr 4:7,937,820...7,967,889
JBrowse link
G TWNK twinkle mtDNA helicase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:13,672,772...13,680,732
Ensembl chr28:13,676,304...13,680,044
JBrowse link
G WDR48 WD repeat domain 48 ISO (PMID:27239033) UniProt PMID:27239033 NCBI chr23:8,716,598...8,766,242
Ensembl chr23:8,715,700...8,764,678
JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:4,299,644...4,328,826
Ensembl chr20:4,300,386...4,328,768
JBrowse link
G YBX1 Y-box binding protein 1 IEA Ensembl GO_REF:0000107 NCBI chr15:646,301...666,347
Ensembl chr15:646,584...666,329
JBrowse link
G YBX3 Y-box binding protein 3 ISO (MGI:3808638|PMID:18676817) RGD
MGI
PMID:8029009, PMID:18676817 MGI:3808638, RGD:632638 NCBI chr27:35,043,756...35,066,230
Ensembl chr27:35,043,699...35,066,227
JBrowse link
C-rich single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNRNPK heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:8127654 RGD:728600 NCBI chr 1:75,499,334...75,511,525
Ensembl chr 1:75,499,393...75,511,425
JBrowse link
G PCBP2 poly(rC) binding protein 2 ISO (MGI:66931|PMID:8208614) MGI PMID:8208614 MGI:66931 NCBI chr27:1,736,264...1,759,416 JBrowse link
G PCBP3 poly(rC) binding protein 3 IEA Ensembl GO_REF:0000107 NCBI chr31:39,025,744...39,275,239
Ensembl chr31:39,025,731...39,275,239
JBrowse link
C-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NABP2 nucleic acid binding protein 2 NOT ISO (PMID:25589350) BHF-UCL PMID:25589350 NCBI chr10:546,964...551,360
Ensembl chr10:546,964...551,107
JBrowse link
G-rich single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IGHMBP2 immunoglobulin mu DNA binding protein 2 ISO (MGI:53452|PMID:8493094) MGI PMID:8493094 MGI:53452 NCBI chr18:49,063,748...49,090,625
Ensembl chr18:49,064,609...49,091,453
JBrowse link
G POT1 protection of telomeres 1 IEA Ensembl GO_REF:0000107 NCBI chr14:10,987,385...11,067,473
Ensembl chr14:10,987,494...11,066,956
JBrowse link
G-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTC1 CST telomere replication complex component 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:33,033,474...33,055,004
Ensembl chr 5:33,033,596...33,055,142
JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 IEA Ensembl GO_REF:0000107 NCBI chr27:1,013,459...1,020,083
Ensembl chr27:1,015,868...1,019,891
JBrowse link
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 ISO PMID:23184978 BHF-UCL PMID:23184978 RGD:11567256 NCBI chr14:39,498,805...39,509,034
Ensembl chr14:39,500,897...39,508,952
JBrowse link
G NABP2 nucleic acid binding protein 2 IEA Ensembl GO_REF:0000107 NCBI chr10:546,964...551,360
Ensembl chr10:546,964...551,107
JBrowse link
G POT1 protection of telomeres 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:10,987,385...11,067,473
Ensembl chr14:10,987,494...11,066,956
JBrowse link
G RPA1 replication protein A1 IEA Ensembl GO_REF:0000107 NCBI chr 9:45,958,566...46,034,850
Ensembl chr 9:45,958,619...46,034,328
JBrowse link
G RPA2 replication protein A2 IEA Ensembl GO_REF:0000107 NCBI chr 2:72,463,951...72,479,864
Ensembl chr 2:72,419,459...72,479,227
JBrowse link
G TERF1 telomeric repeat binding factor 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr29:21,664,378...21,701,491
Ensembl chr29:21,664,186...21,700,495
JBrowse link
G TERF2 telomeric repeat binding factor 2 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 5:80,278,224...80,305,315
Ensembl chr 5:80,277,505...80,306,342
JBrowse link
G TERF2IP TERF2 interacting protein IEA Ensembl GO_REF:0000107 NCBI chr 5:75,164,410...75,172,959
Ensembl chr 5:75,165,191...75,172,838
JBrowse link
sequence-specific single stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HSF1 heat shock transcription factor 1 ISO RGD PMID:21512157 RGD:10402944 NCBI chr13:37,724,741...37,745,259
Ensembl chr13:37,724,759...37,745,252
JBrowse link
G PCBP1 poly(rC) binding protein 1 IEA Ensembl GO_REF:0000107 NCBI chr10:68,686,278...68,687,916 JBrowse link
single-stranded telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 IEA Ensembl GO_REF:0000107 NCBI chr14:39,498,805...39,509,034
Ensembl chr14:39,500,897...39,508,952
JBrowse link
G POT1 protection of telomeres 1 IEA InterPro GO_REF:0000002 NCBI chr14:10,987,385...11,067,473
Ensembl chr14:10,987,494...11,066,956
JBrowse link
G RAD50 RAD50 double strand break repair protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:20,836,863...20,928,930
Ensembl chr11:20,836,879...20,928,819
JBrowse link
G RPA1 replication protein A1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:45,958,566...46,034,850
Ensembl chr 9:45,958,619...46,034,328
JBrowse link
G STN1 STN1 subunit of CST complex IEA UniProt
InterPro
GO_REF:0000002, GO_REF:0000104 NCBI chr28:16,203,607...16,246,468
Ensembl chr28:16,204,073...16,246,058
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 17054
    binding 15289
      heterocyclic compound binding 4915
        nucleic acid binding 3074
          DNA binding 2009
            single-stranded DNA binding 117
              C-rich single-stranded DNA binding 3
              G-rich single-stranded DNA binding 2
              sequence-specific single stranded DNA binding + 14
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.