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ONTOLOGY REPORT - ANNOTATIONS


Term:single-stranded DNA binding
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Accession:GO:0003697 term browser browse the term
Definition:Interacting selectively and non-covalently with single-stranded DNA.
Comment:Note that this term is restricted to those cases where the binding is to a single-stranded DNA molecule, not to one of the stands of double-stranded DNA.
Synonyms:exact_synonym: ssDNA binding
 alt_id: GO:0003698;   GO:0003699


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single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07031480.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr18:15,148,983...15,167,311 JBrowse link
G AABR07048387.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:76,240,167...76,261,198 JBrowse link
G AC095390.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr12:51,965,417...51,965,779 JBrowse link
G AC117889.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:975,697...1,003,352 JBrowse link
G Alyref Aly/REF export factor ISO (MGI:1913121|PMID:10786854) RGD PMID:10786854 MGI:1913121 NCBI chr10:109,768,593...109,774,639
Ensembl chr10:109,770,876...109,774,639
JBrowse link
G Anxa1 annexin A1 contributes_to IDA RGD PMID:10548514, PMID:20655937 RGD:2306916, RGD:7421590 NCBI chr 1:237,893,983...237,910,002
Ensembl chr 1:237,893,966...237,910,012
JBrowse link
G Aptx aprataxin IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:56,987,714...57,009,481
Ensembl chr 5:56,987,909...57,008,859
JBrowse link
G Blm BLM RecQ like helicase ISO (PMID:12818200), (PMID:20639533) RGD PMID:12818200, PMID:20639533 NCBI chr 1:142,246,773...142,332,616
Ensembl chr 1:142,246,790...142,332,588
JBrowse link
G Brca2 BRCA2, DNA repair associated IDA
ISO
IEA
(PMID:20729832)
GO_REF:0000107
RGD
Ensembl
PMID:20729832, PMID:12228710 GO_REF:0000107, RGD:632363 NCBI chr12:503,660...544,754
Ensembl chr12:504,007...544,748
JBrowse link
G Cdc45 cell division cycle 45 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:86,328,785...86,354,099
Ensembl chr11:86,329,012...86,358,453
JBrowse link
G Cnbp CCHC-type zinc finger, nucleic acid binding protein IDA RGD PMID:7788528 RGD:632384 NCBI chr 4:119,747,890...119,756,787
Ensembl chr 4:119,747,911...119,756,765
JBrowse link
G Cry2 cryptochrome circadian regulator 2 ISO (PMID:12627958) RGD PMID:12627958 NCBI chr 3:81,314,151...81,344,143
Ensembl chr 3:81,314,149...81,344,110
JBrowse link
G Ctc1 CST telomere replication complex component 1 IBA
ISO
PMID:21873635
(MGI:4441245|PMID:19119139)
RGD PMID:19119139, PMID:21873635 MGI:4441245, RGD:13792537 NCBI chr10:55,596,172...55,616,873
Ensembl chr10:55,596,148...55,616,889
JBrowse link
G Ddx11 DEAD/H-box helicase 11 ISO (PMID:9013641) RGD PMID:9013641 NCBI chr 9:114,113,642...114,133,908
Ensembl chr 9:114,111,580...114,132,492
JBrowse link
G Dhx36 DEAH-box helicase 36 ISO (PMID:20696886) RGD PMID:20696886 NCBI chr 2:152,785,844...152,824,549
Ensembl chr 2:152,785,844...152,824,547
JBrowse link
G Dhx9 DExH-box helicase 9 ISO (PMID:10198287), (PMID:20696886), (PMID:21957149), (PMID:9111062) RGD PMID:9111062, PMID:10198287, PMID:20696886, PMID:21957149 NCBI chr13:70,885,503...70,922,278
Ensembl chr13:70,885,504...70,922,245
JBrowse link
G Dmc1 DNA meiotic recombinase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:120,796,217...120,840,524
Ensembl chr 7:120,796,217...120,839,577
JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO
IBA
(PMID:16076955), (PMID:17720715)
PMID:21873635
RGD PMID:16076955, PMID:17720715, PMID:21873635 RGD:13792537 NCBI chr 1:80,256,973...80,268,198
Ensembl chr 1:80,256,973...80,268,198
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO
IBA
(PMID:10413517)
PMID:21873635
RGD PMID:10413517, PMID:21873635 RGD:13792537 NCBI chr10:2,010,140...2,037,953
Ensembl chr10:2,010,648...2,037,891
JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease ISO
IBA
(PMID:12644470)
PMID:21873635
RGD PMID:12644470, PMID:21873635 RGD:13792537 NCBI chr 9:50,928,847...50,970,962
Ensembl chr 9:50,925,619...50,970,955
JBrowse link
G Fam111a FAM111 trypsin like peptidase A ISO (PMID:32165630) RGD PMID:32165630 NCBI chr 1:229,003,778...229,019,532
Ensembl chr 1:229,003,961...229,019,527
JBrowse link
G Fbh1 F-box DNA helicase 1 ISO (PMID:19736316), (PMID:23393192) RGD PMID:19736316, PMID:23393192 NCBI chr17:70,399,093...70,437,151
Ensembl chr17:70,399,049...70,437,144
JBrowse link
G Fubp3 far upstream element binding protein 3 ISO (PMID:8940189) RGD PMID:8940189 NCBI chr 3:10,220,712...10,269,757
Ensembl chr 3:10,221,395...10,269,693
JBrowse link
G Hmces 5-hydroxymethylcytosine binding, ES cell specific ISS
ISO
GO_REF:0000024
(MGI:6393148|PMID:31806351)
(PMID:30554877), (PMID:31235913)
UniProt
RGD
PMID:30554877, PMID:31235913, PMID:31806351 GO_REF:0000024, MGI:6393148 NCBI chr 4:119,841,088...119,864,115
Ensembl chr 4:119,815,139...119,864,114
JBrowse link
G Hmgb1 high mobility group box 1 IDA RGD PMID:11024186 RGD:2316830 NCBI chr12:7,082,529...7,090,246
Ensembl chr16:37,500,017...37,502,237
JBrowse link
G Hmgb2 high mobility group box 2 ISS
ISO
GO_REF:0000024
(PMID:11754747)
AgBase
RGD
PMID:11754747 GO_REF:0000024 NCBI chr16:36,077,615...36,080,191
Ensembl chr16:36,077,617...36,080,191
Ensembl chr11:36,077,617...36,080,191
JBrowse link
G Hmgb2l1 high mobility group box 2-like 1 ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr11:49,708,038...49,709,128
Ensembl chr16:36,077,617...36,080,191
Ensembl chr11:36,077,617...36,080,191
JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 TAS
ISS
ISO
GO_REF:0000024
(PMID:8521471)
HGNC
RGD
PMID:8521471, PMID:3005291 GO_REF:0000024, RGD:68800 NCBI chr 7:144,865,302...144,871,592
Ensembl chr 7:144,865,608...144,871,585
JBrowse link
G Hnrnpdl heterogeneous nuclear ribonucleoprotein D-like ISO (PMID:9538234) RGD PMID:9538234 NCBI chr14:11,199,114...11,204,670
Ensembl chr14:11,198,896...11,202,669
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IDA RGD PMID:15361071 RGD:10002777 NCBI chr17:6,664,730...6,676,753
Ensembl chr17:6,665,659...6,676,654
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U IEA
ISO
GO_REF:0000107
(PMID:1628625), (PMID:8068679), (PMID:8174554)
Ensembl
RGD
PMID:1628625, PMID:8068679, PMID:8174554 GO_REF:0000107 NCBI chr13:96,222,093...96,238,845
Ensembl chr13:96,225,912...96,238,572
JBrowse link
G Hrob homologous recombination factor with OB-fold ISS
ISO
IEA
GO_REF:0000024
(MGI:6383322|PMID:31467087)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:31467087 GO_REF:0000024, GO_REF:0000107, MGI:6383322 NCBI chr10:90,192,608...90,214,486
Ensembl chr10:90,192,627...90,214,486
JBrowse link
G Ighe immunoglobulin heavy constant epsilon IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 6:138,066,728...138,068,606 JBrowse link
G Ighm immunoglobulin heavy constant mu IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr 6:138,054,662...138,662,511 JBrowse link
G Jchain joining chain of multimeric IgA and IgM contributes_to ISO (PMID:21786026) RGD PMID:21786026 NCBI chr14:21,176,841...21,183,731
Ensembl chr14:21,177,237...21,183,542
JBrowse link
G LOC100362927 replication protein A3-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:51,965,390...51,965,816 JBrowse link
G LOC100912427 nuclease-sensitive element-binding protein 1-like ISO (MGI:3513643|PMID:15282343) RGD PMID:15282343 MGI:3513643 NCBI chr 1:186,635,408...186,641,503
Ensembl chr 1:186,640,425...186,641,393
JBrowse link
G LOC103690068 immortalization up-regulated protein-like NOT ISO (PMID:11080599) RGD PMID:11080599 NCBI chr 1:87,190,704...87,192,296
Ensembl chr 1:88,192,370...88,193,346
Ensembl chr 1:88,192,370...88,193,346
JBrowse link
G Lonp1 lon peptidase 1, mitochondrial IBA
ISO
PMID:21873635
(MGI:2655856|PMID:12657466)
RGD PMID:12657466, PMID:21873635 MGI:2655856, RGD:13792537 NCBI chr 9:10,428,853...10,441,180
Ensembl chr 9:10,428,853...10,441,177
JBrowse link
G Lrpprc leucine-rich pentatricopeptide repeat containing ISO (MGI:2664354|PMID:12071956) RGD PMID:12071956 MGI:2664354 NCBI chr 6:7,984,043...8,066,874
Ensembl chr 6:7,984,019...8,066,868
JBrowse link
G Mcm10 minichromosome maintenance 10 replication initiation factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:77,224,218...77,245,486
Ensembl chr17:77,224,112...77,246,478
JBrowse link
G Mcm2 minichromosome maintenance complex component 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:120,825,699...120,840,221
Ensembl chr 4:120,825,699...120,840,111
JBrowse link
G Mcm3 minichromosome maintenance complex component 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:26,914,057...26,932,201
Ensembl chr 9:26,914,057...26,932,201
JBrowse link
G Mcm4 minichromosome maintenance complex component 4 IBA
ISO
PMID:21873635
PR:P97311|PR:Q61881 (MGI:3582148|PMID:15917436)
RGD PMID:15917436, PMID:21873635 MGI:3582148, RGD:13792537 NCBI chr11:89,511,191...89,524,892
Ensembl chr11:89,511,191...89,524,892
JBrowse link
G Mcm5 minichromosome maintenance complex component 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:14,523,482...14,561,281
Ensembl chr19:14,523,554...14,561,278
JBrowse link
G Mcm6 minichromosome maintenance complex component 6 IEA
ISO
IBA
GO_REF:0000107
PR:P49717|PR:Q61881 (MGI:3582148|PMID:15917436)
PMID:21873635
Ensembl
RGD
PMID:15917436, PMID:21873635 GO_REF:0000107, MGI:3582148, RGD:13792537 NCBI chr13:45,042,882...45,068,073
Ensembl chr13:45,042,882...45,068,077
JBrowse link
G Mcm7 minichromosome maintenance complex component 7 IBA
ISO
PMID:21873635
PR:P49717|PR:P97311 (MGI:3582148|PMID:15917436)
RGD PMID:15917436, PMID:21873635 MGI:3582148, RGD:13792537 NCBI chr12:19,306,615...19,313,877
Ensembl chr12:19,306,607...19,314,016
JBrowse link
G Mcm8 minichromosome maintenance 8 homologous recombination repair factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:125,470,499...125,500,795
Ensembl chr 3:125,470,551...125,500,795
JBrowse link
G Mcm9 minichromosome maintenance 9 homologous recombination repair factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:34,818,093...34,930,157
Ensembl chr20:34,846,804...34,929,965
JBrowse link
G Mcmdc1 minichromosome maintenance deficient domain containing 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Mcmdc2 minichromosome maintenance domain containing 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:8,973,861...9,039,616
Ensembl chr 5:8,978,010...9,038,594
JBrowse link
G Meiob meiosis specific with OB-fold ISS
ISO
IBA
GO_REF:0000024
(MGI:5527015|PMID:24068956), (MGI:5538413|PMID:24240703)
PMID:21873635
UniProt
RGD
PMID:24068956, PMID:24240703, PMID:21873635 GO_REF:0000024, MGI:5527015, MGI:5538413, RGD:13792537 NCBI chr10:14,174,645...14,206,026
Ensembl chr10:14,174,732...14,206,025
JBrowse link
G Mlh1 mutL homolog 1 contributes_to ISO
IEA
(PMID:11809883)
GO_REF:0000107
RGD
Ensembl
PMID:11809883 GO_REF:0000107 NCBI chr 8:119,486,655...119,523,716
Ensembl chr 8:119,486,691...119,523,964
JBrowse link
G Msh2 mutS homolog 2 contributes_to ISO
IEA
(PMID:11809883)
GO_REF:0000107
RGD
Ensembl
PMID:11809883 GO_REF:0000107 NCBI chr 6:11,215,951...11,274,916
Ensembl chr 6:11,215,963...11,274,932
JBrowse link
G Msh3 mutS homolog 3 contributes_to ISO (PMID:11809883) RGD PMID:11809883 NCBI chr 2:21,790,048...21,931,791
Ensembl chr 2:21,790,044...21,931,720
JBrowse link
G Myef2 myelin expression factor 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:117,353,490...117,389,582
Ensembl chr 3:117,354,382...117,389,561
JBrowse link
G Nabp1 nucleic acid binding protein 1 ISS
ISO
GO_REF:0000024
(MGI:3692356|PMID:16533169)
UniProt
RGD
PMID:16533169 GO_REF:0000024, MGI:3692356 NCBI chr 9:55,049,893...55,057,784
Ensembl chr 9:55,050,203...55,057,658
JBrowse link
G Nabp2 nucleic acid binding protein 2 ISS
ISO
GO_REF:0000024
(PMID:18449195), (PMID:19683501)
UniProt
RGD
PMID:18449195, PMID:19683501 GO_REF:0000024 NCBI chr 7:2,820,006...2,825,627
Ensembl chr 7:2,820,007...2,825,608
JBrowse link
G Ncl nucleolin IDA RGD PMID:6311246 RGD:9693696 NCBI chr 9:93,369,119...93,377,643
Ensembl chr 9:93,368,932...93,377,643
JBrowse link
G Neil3 nei-like DNA glycosylase 3 ISO (PMID:19170771)
(MGI:4440390|PMID:20185759)
RGD PMID:19170771, PMID:20185759 MGI:4440390 NCBI chr16:41,079,444...41,138,505
Ensembl chr16:41,079,444...41,138,505
JBrowse link
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 IDA RGD PMID:12010125 RGD:633207 NCBI chr10:81,657,152...81,666,542
Ensembl chr10:81,657,153...81,666,523
JBrowse link
G Nol12 nucleolar protein 12 IDA RGD PMID:16430885 RGD:8553573 NCBI chr 7:120,161,238...120,166,852
Ensembl chr 7:120,161,091...120,167,020
JBrowse link
G Nucks1 nuclear casein kinase and cyclin-dependent kinase substrate 1 TAS
IBA
IDA
PMID:21873635
PMID:1627131
RGD
GO_Central
ParkinsonsUK-UCL
PMID:12413487, PMID:21873635, PMID:1627131 RGD:1298022, RGD:13792537, RGD:11344951 NCBI chr13:48,679,726...48,709,663
Ensembl chr13:48,679,774...48,705,575
JBrowse link
G Nup35 nucleoporin 35 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:67,866,784...67,896,828
Ensembl chr 3:67,870,111...67,896,153
JBrowse link
G Park7 Parkinsonism associated deglycase NOT ISO (PMID:22683601) RGD PMID:22683601 NCBI chr 5:167,982,438...168,004,724
Ensembl chr 5:167,982,439...168,004,724
JBrowse link
G Pcbp1 poly(rC) binding protein 1 ISO (PMID:8152927)
(MGI:3577541|PMID:15836633)
RGD PMID:8152927, PMID:15836633 MGI:3577541 NCBI chr 4:118,327,185...118,329,223
Ensembl chr 4:118,327,533...118,328,602
JBrowse link
G Pcbp2 poly(rC) binding protein 2 IBA
ISO
PMID:21873635
(MGI:6456067|PMID:24026233)
RGD PMID:24026233, PMID:21873635 MGI:6456067, RGD:13792537 NCBI chr 7:144,077,901...144,103,723
Ensembl chr 7:144,078,496...144,101,893
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component contributes_to ISO (PMID:11809883) RGD PMID:11809883 NCBI chr12:12,714,394...12,738,654
Ensembl chr12:12,714,394...12,738,641
JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:62,382,604...62,698,830
Ensembl chr  X:62,382,608...62,698,830
JBrowse link
G Polr2d RNA polymerase II subunit D contributes_to IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:24,570,762...24,577,894
Ensembl chr18:24,570,762...24,577,894
JBrowse link
G Polr2g RNA polymerase II subunit G IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:224,991,250...224,998,355
Ensembl chr 1:224,991,222...224,994,653
JBrowse link
G Polr2h RNA polymerase II, I and III subunit H ISO (PMID:16632472) RGD PMID:16632472 NCBI chr11:83,877,760...83,882,208
Ensembl chr11:83,878,006...83,882,117
JBrowse link
G Polr3c RNA polymerase III subunit C ISO
ISS
(PMID:21358628)
GO_REF:0000024
RGD
UniProt
PMID:21358628 GO_REF:0000024 NCBI chr 2:198,836,282...198,852,368
Ensembl chr 2:198,836,285...198,852,161
JBrowse link
G Pou4f1 POU class 4 homeobox 1 ISS
ISO
IEA
GO_REF:0000024
(MGI:5795831|PMID:8621561)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:8621561 GO_REF:0000024, GO_REF:0000107, MGI:5795831 NCBI chr15:88,618,255...88,622,712
Ensembl chr15:88,620,470...88,622,413
JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 IDA RGD PMID:1561080 RGD:10045981 NCBI chr 7:12,663,965...12,673,723
Ensembl chr 7:12,663,965...12,673,718
JBrowse link
G Pura purine rich element binding protein A IEA
ISO
GO_REF:0000107
(MGI:3688338|PMID:12933792)
Ensembl
RGD
PMID:12933792 GO_REF:0000107, MGI:3688338 NCBI chr18:29,104,712...29,114,918
Ensembl chr18:29,110,242...29,111,156
JBrowse link
G Purb purine rich element binding protein B IDA
ISO
ISS
IEA
PMID:12933792
(MGI:3688338|PMID:12933792)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:12933792, PMID:12933792 GO_REF:0000024, GO_REF:0000107, MGI:3688338, RGD:1581942 NCBI chr14:86,736,876...86,739,335
Ensembl chr14:86,736,878...86,739,335
JBrowse link
G Rad18 RAD18 E3 ubiquitin protein ligase IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:144,537,329...144,620,606
Ensembl chr 4:144,536,729...144,620,731
JBrowse link
G Rad51 RAD51 recombinase ISO
IBA
(PMID:26681308), (PMID:7988572)
(MGI:5442243|PMID:22778135)
PMID:21873635
RGD PMID:7988572, PMID:22778135, PMID:26681308, PMID:21873635 MGI:5442243, RGD:13792537 NCBI chr 3:110,918,240...110,942,920
Ensembl chr 3:110,918,243...110,942,917
JBrowse link
G Rad51ap1 RAD51 associated protein 1 IBA
ISO
PMID:21873635
(PMID:17996711), (PMID:9396801)
RGD PMID:9396801, PMID:17996711, PMID:21873635 RGD:13792537 NCBI chr 4:159,469,803...159,482,869
Ensembl chr 4:159,469,804...159,482,869
JBrowse link
G Rad51b RAD51 paralog B ISO
IBA
(PMID:12441335)
PMID:21873635
RGD PMID:12441335, PMID:21873635 RGD:13792537 NCBI chr 6:102,473,978...103,018,185
Ensembl chr 6:102,477,036...102,512,505
JBrowse link
G Rad51d RAD51 paralog D ISO
IBA
(PMID:10871607)
PMID:21873635
RGD PMID:10871607, PMID:21873635 RGD:13792537 NCBI chr10:70,222,703...70,241,352
Ensembl chr10:70,227,163...70,241,254
JBrowse link
G Rad52 RAD52 homolog, DNA repair protein ISO (PMID:12370410) RGD PMID:12370410 NCBI chr 4:152,429,826...152,451,875
Ensembl chr 4:152,430,187...152,451,609
JBrowse link
G Radx RPA1 related single stranded DNA binding protein, X-linked ISO
IBA
ISS
(PMID:28735897)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:28735897, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr  X:110,670,037...110,782,420
Ensembl chr  X:110,670,119...110,782,284
JBrowse link
G Rbbp8 RB binding protein 8, endonuclease IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:3,134,630...3,227,702
Ensembl chr18:3,162,543...3,227,688
JBrowse link
G Rexo4 REX4 homolog, 3'-5' exonuclease ISO (PMID:21602889) RGD PMID:21602889 NCBI chr 3:5,500,578...5,510,908
Ensembl chr 3:5,500,589...5,510,908
JBrowse link
G RGD1565844 similar to RIKEN cDNA 1700045I19 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:32,495,573...32,496,646
Ensembl chr  X:32,495,809...32,496,549
JBrowse link
G Rnf138 ring finger protein 138 ISO
IBA
ISS
(PMID:26502055)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:26502055, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr18:15,146,925...15,167,361 JBrowse link
G Rpa1 replication protein A1 IDA
IBA
ISO
PMID:21873635
(PMID:19010961), (PMID:8990123)
RGD PMID:8990123, PMID:19010961, PMID:8463251, PMID:21873635 RGD:2307012, RGD:13792537 NCBI chr10:62,140,419...62,191,518
Ensembl chr10:62,140,419...62,191,512
JBrowse link
G Rpa2 replication protein A2 IDA
IBA
ISO
PMID:21873635
(PMID:19010961)
RGD PMID:19010961, PMID:8463251, PMID:21873635 RGD:2307012, RGD:13792537 NCBI chr 5:150,957,041...150,967,597
Ensembl chr 5:150,957,001...150,968,269
JBrowse link
G Rpa3 replication protein A3 ISO
IBA
(PMID:19010961)
PMID:21873635
RGD PMID:19010961, PMID:21873635 RGD:13792537 NCBI chr 4:34,279,320...34,282,351
Ensembl chr 4:34,279,320...34,282,351
JBrowse link
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) ISO (PMID:18184592) RGD PMID:18184592 NCBI chr 3:111,478,350...111,537,941
Ensembl chr 3:111,478,382...111,537,941
JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 ISO (PMID:29670289) RGD PMID:29670289 NCBI chr 3:153,210,829...153,250,705
Ensembl chr 3:153,210,829...153,250,641
JBrowse link
G Setmar SET domain and mariner transposase fusion gene ISO (PMID:24573677) RGD PMID:24573677 NCBI chr 4:140,092,346...140,104,495
Ensembl chr 4:140,092,352...140,105,316
JBrowse link
G Shoc1 shortage in chiasmata 1 ISO (PMID:29742103) RGD PMID:29742103 NCBI chr 5:76,190,486...76,298,723 JBrowse link
G Smc2 structural maintenance of chromosomes 2 ISO (MGI:5014036|PMID:20139420) RGD PMID:20139420 MGI:5014036 NCBI chr 5:68,717,509...68,764,080
Ensembl chr 5:68,717,519...68,763,850
JBrowse link
G Smc4 structural maintenance of chromosomes 4 ISO (MGI:5014036|PMID:20139420) RGD PMID:20139420 MGI:5014036 NCBI chr 2:165,600,934...165,629,415
Ensembl chr 2:165,601,007...165,629,415
JBrowse link
G Spen spen family transcriptional repressor ISO (MGI:1890122|PMID:10451362) RGD PMID:10451362 MGI:1890122 NCBI chr 5:160,015,573...160,070,915
Ensembl chr 5:160,015,454...160,070,965
JBrowse link
G Sprtn SprT-like N-terminal domain ISO
ISS
(PMID:27871365), (PMID:32649882)
GO_REF:0000024
RGD
UniProt
PMID:27871365, PMID:32649882 GO_REF:0000024 NCBI chr19:57,649,901...57,657,158
Ensembl chr19:57,650,163...57,654,864
JBrowse link
G Ssbp1 single stranded DNA binding protein 1 NAS
IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:26446790)
GO_REF:0000002
Ensembl
RGD
InterPro
PMID:26446790, PMID:8482537, PMID:21873635 GO_REF:0000002, GO_REF:0000107, RGD:730021, RGD:13792537 NCBI chr 4:68,634,844...68,645,112
Ensembl chr 4:68,634,929...68,645,172
JBrowse link
G Ssbp2 single-stranded DNA binding protein 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:20,416,795...20,707,838
Ensembl chr 2:20,431,243...20,702,515
JBrowse link
G Ssbp3 single stranded DNA binding protein 3 TAS
IEA
GO_REF:0000002 InterPro PMID:10524251 GO_REF:0000002, RGD:634142 NCBI chr 5:126,511,339...126,649,830
Ensembl chr 5:126,511,350...126,648,661
JBrowse link
G Ssbp4 single stranded DNA binding protein 4 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:20,578,111...20,589,295
Ensembl chr16:20,578,131...20,589,290
JBrowse link
G Stn1 STN1 subunit of CST complex ISS
ISO
IBA
GO_REF:0000024
(MGI:4441245|PMID:19119139)
PMID:21873635
UniProt
RGD
PMID:19119139, PMID:21873635 GO_REF:0000024, MGI:4441245, RGD:13792537 NCBI chr 1:267,281,786...267,315,714
Ensembl chr 1:267,281,764...267,315,729
JBrowse link
G Sub1 SUB1 regulator of transcription ISO (PMID:8062391) RGD PMID:8062391 NCBI chr 2:62,019,902...62,034,704
Ensembl chr 2:62,022,567...62,034,628
JBrowse link
G Swsap1 SWIM-type zinc finger 7 associated protein 1 ISO
IBA
(PMID:21965664)
PMID:21873635
RGD PMID:21965664, PMID:21873635 RGD:13792537 NCBI chr 8:22,966,752...22,969,280
Ensembl chr 8:22,966,561...22,969,459
JBrowse link
G Tdp1 tyrosyl-DNA phosphodiesterase 1 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:15811850)
Ensembl
RGD
PMID:15811850, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 6:123,895,860...123,963,688
Ensembl chr 6:123,897,956...123,963,675
JBrowse link
G Tdp2 tyrosyl-DNA phosphodiesterase 2 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:22822062)
Ensembl
UniProt
RGD
PMID:22822062, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr17:42,229,667...42,241,025
Ensembl chr17:42,229,642...42,241,066
JBrowse link
G Ten1 TEN1 subunit of CST complex IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:105,073,077...105,095,094
Ensembl chr10:105,073,077...105,095,094
JBrowse link
G Top1 DNA topoisomerase I IEA
ISO
GO_REF:0000107
(PMID:8631794)
Ensembl
RGD
PMID:8631794 GO_REF:0000107 NCBI chr 3:156,635,688...156,717,686
Ensembl chr 3:156,642,464...156,717,686
JBrowse link
G Top3a DNA topoisomerase III alpha ISO (PMID:29290614) RGD PMID:29290614 NCBI chr10:46,980,646...47,018,728
Ensembl chr10:46,981,958...47,018,537
JBrowse link
G Trex1 three prime repair exonuclease 1 ISO (MGI:3709447|PMID:17293595), (MGI:3714672|PMID:17355961) RGD PMID:17293595, PMID:17355961 MGI:3709447, MGI:3714672 NCBI chr 8:117,796,127...117,797,427
Ensembl chr 8:117,796,128...117,797,427
JBrowse link
G Tsn translin contributes_to IDA RGD PMID:9681436 RGD:634412 NCBI chr13:34,240,809...34,251,671
Ensembl chr13:34,238,717...34,253,910
JBrowse link
G Tsnax translin-associated factor X contributes_to IDA RGD PMID:9681436 RGD:634412 NCBI chr19:57,771,539...57,785,567
Ensembl chr19:57,771,398...57,785,543
JBrowse link
G Twnk twinkle mtDNA helicase ISO
IBA
(PMID:18971204)
PMID:21873635
RGD PMID:18971204, PMID:21873635 RGD:13792537 NCBI chr 1:264,756,060...264,762,892
Ensembl chr 1:264,756,499...264,762,892
JBrowse link
G Wdr48 WD repeat domain 48 ISO (PMID:27239033) RGD PMID:27239033 NCBI chr 8:128,577,080...128,610,287
Ensembl chr 8:128,577,080...128,610,287
JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor ISO
IBA
(PMID:12509299)
PMID:21873635
RGD PMID:12509299, PMID:21873635 RGD:13792537 NCBI chr 4:123,134,457...123,161,985
Ensembl chr 4:123,134,457...123,161,985
JBrowse link
G Ybx1 Y box binding protein 1 IDA
IEA
GO_REF:0000107 Ensembl PMID:17893273 GO_REF:0000107, RGD:2311253 NCBI chr 5:138,319,754...138,336,721
Ensembl chr 5:138,319,762...138,336,475
JBrowse link
G Ybx3 Y box binding protein 3 IDA
ISO
(MGI:3808638|PMID:18676817) RGD PMID:18676817, PMID:8029009 MGI:3808638, RGD:632638 NCBI chr 4:165,606,819...165,630,041
Ensembl chr 4:165,606,819...165,630,118
JBrowse link
C-rich single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IDA RGD PMID:8127654 RGD:728600 NCBI chr17:6,664,730...6,676,753
Ensembl chr17:6,665,659...6,676,654
JBrowse link
G Pcbp2 poly(rC) binding protein 2 ISO (MGI:66931|PMID:8208614) RGD PMID:8208614 MGI:66931 NCBI chr 7:144,077,901...144,103,723
Ensembl chr 7:144,078,496...144,101,893
JBrowse link
G Pcbp3 poly(rC) binding protein 3 ISO (MGI:5428778|PMID:22521865) RGD PMID:22521865 MGI:5428778 NCBI chr20:12,429,255...12,629,985
Ensembl chr20:12,429,315...12,629,981
JBrowse link
C-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nabp2 nucleic acid binding protein 2 NOT ISO (PMID:25589350) RGD PMID:25589350 NCBI chr 7:2,820,006...2,825,627
Ensembl chr 7:2,820,007...2,825,608
JBrowse link
G-rich single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ighmbp2 immunoglobulin mu DNA binding protein 2 ISO (MGI:53452|PMID:8493094) RGD PMID:8493094 MGI:53452 NCBI chr 1:218,509,274...218,531,922
Ensembl chr 1:218,508,950...218,532,142
JBrowse link
G Pot1 protection of telomeres 1 ISO (PMID:19734539) RGD PMID:19734539 NCBI chr 4:51,888,632...51,946,764
Ensembl chr 4:51,888,634...51,946,715
JBrowse link
G-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctc1 CST telomere replication complex component 1 ISO (PMID:22763445) RGD PMID:22763445 NCBI chr10:55,596,172...55,616,873
Ensembl chr10:55,596,148...55,616,889
JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 ISO
IEA
(PMID:23935072)
GO_REF:0000107
RGD
Ensembl
PMID:23935072 GO_REF:0000107 NCBI chr 7:144,865,302...144,871,592
Ensembl chr 7:144,865,608...144,871,585
JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 IDA PMID:23184978 BHF-UCL PMID:23184978 RGD:11567256 NCBI chr 4:81,237,496...81,241,281
Ensembl chr 4:81,237,496...81,241,282
JBrowse link
G Nabp2 nucleic acid binding protein 2 ISO
IEA
(PMID:25589350)
GO_REF:0000107
RGD
Ensembl
PMID:25589350 GO_REF:0000107 NCBI chr 7:2,820,006...2,825,627
Ensembl chr 7:2,820,007...2,825,608
JBrowse link
G Pot1 protection of telomeres 1 ISO
IBA
(PMID:17237768), (PMID:21852327), (PMID:22763445)
PMID:21873635
RGD PMID:17237768, PMID:21852327, PMID:22763445, PMID:21873635 RGD:13792537 NCBI chr 4:51,888,632...51,946,764
Ensembl chr 4:51,888,634...51,946,715
JBrowse link
G Pot1b protection of telomeres 1B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:7,845,697...7,902,270
Ensembl chr 9:7,845,845...7,891,514
JBrowse link
G Rpa1 replication protein A1 ISO (PMID:16973897), (PMID:24747047), (PMID:26041456) RGD PMID:16973897, PMID:24747047, PMID:26041456 NCBI chr10:62,140,419...62,191,518
Ensembl chr10:62,140,419...62,191,512
JBrowse link
G Rpa2 replication protein A2 ISO (PMID:24747047) RGD PMID:24747047 NCBI chr 5:150,957,041...150,967,597
Ensembl chr 5:150,957,001...150,968,269
JBrowse link
G Terf1 telomeric repeat binding factor 1 ISO
IBA
(PMID:17694070)
PMID:21873635
RGD PMID:17694070, PMID:21873635 RGD:13792537 NCBI chr 5:2,853,455...2,882,731
Ensembl chr 5:2,853,459...2,882,668
JBrowse link
G Terf2 telomeric repeat binding factor 2 ISO
IBA
(PMID:17694070)
PMID:21873635
RGD PMID:17694070, PMID:21873635 RGD:13792537 NCBI chr19:39,271,992...39,301,506
Ensembl chr19:39,272,499...39,300,893
JBrowse link
G Terf2ip TERF2 interacting protein IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr19:44,231,317...44,238,406
Ensembl chr19:44,231,251...44,238,404
JBrowse link
sequence-specific single stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsf1 heat shock transcription factor 1 IDA RGD PMID:21512157 RGD:10402944 NCBI chr 7:117,538,523...117,565,478
Ensembl chr 7:117,538,523...117,565,478
JBrowse link
G Pcbp1 poly(rC) binding protein 1 ISO (MGI:3577541|PMID:15836633) RGD PMID:15836633 MGI:3577541 NCBI chr 4:118,327,185...118,329,223
Ensembl chr 4:118,327,533...118,328,602
JBrowse link
single-stranded telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 ISO
IEA
IDA
(PMID:15659580)
GO_REF:0000107
RGD
Ensembl
PMID:15659580, PMID:15659580 GO_REF:0000107, RGD:10680046 NCBI chr 4:81,237,496...81,241,281
Ensembl chr 4:81,237,496...81,241,282
JBrowse link
G Pot1 protection of telomeres 1 ISO (PMID:12768206), (PMID:15632080), (PMID:17237767)
(MGI:3692019|PMID:17053789)
RGD PMID:12768206, PMID:15632080, PMID:17053789, PMID:17237767 MGI:3692019 NCBI chr 4:51,888,632...51,946,764
Ensembl chr 4:51,888,634...51,946,715
JBrowse link
G Rad50 RAD50 double strand break repair protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:39,002,130...39,054,042
Ensembl chr10:39,001,498...39,054,142
JBrowse link
G Rpa1 replication protein A1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:62,140,419...62,191,518
Ensembl chr10:62,140,419...62,191,512
JBrowse link
G Stn1 STN1 subunit of CST complex ISO
IEA
ISS
(PMID:19648609)
GO_REF:0000104
GO_REF:0000024
RGD
UniProt
PMID:19648609 GO_REF:0000024, GO_REF:0000104 NCBI chr 1:267,281,786...267,315,714
Ensembl chr 1:267,281,764...267,315,729
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 20457
    binding 17224
      heterocyclic compound binding 5745
        nucleic acid binding 3659
          DNA binding 2251
            single-stranded DNA binding 129
              C-rich single-stranded DNA binding 3
              G-rich single-stranded DNA binding 2
              sequence-specific single stranded DNA binding + 15
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.