ONTOLOGY REPORT - ANNOTATIONS
Term: neural retina development
Accession: GO:0003407
browse the term
Definition: The progression of the neural retina over time from its initial formation to the mature structure. The neural retina is the part of the retina that contains neurons and photoreceptor cells.
G
Actl6a
actin-like 6A
involved_in
ISO
(PMID:18816825)
RGD
PMID:18816825
NCBI chr 2:115,492,374...115,508,401
Ensembl chr 2:115,492,285...115,508,401
G
Atoh7
atonal bHLH transcription factor 7
acts_upstream_of_or_within
ISO
(PMID:21441919) MGI:2159015 (PMID:21441919)
RGD
PMID:21441919
NCBI chr20:25,530,826...25,531,275
Ensembl chr20:25,530,826...25,531,275
G
Atp2b1
ATPase plasma membrane Ca2+ transporting 1
IEP
RGD
PMID:16079002
RGD:2317729
NCBI chr 7:33,735,595...33,845,226
Ensembl chr 7:33,735,871...33,843,295
G
Atp2b2
ATPase plasma membrane Ca2+ transporting 2
IEP
RGD
PMID:16079002
RGD:2317729
NCBI chr 4:146,894,602...147,208,060
Ensembl chr 4:146,896,332...147,140,665
G
Atp2b3
ATPase plasma membrane Ca2+ transporting 3
IEP
RGD
PMID:16079002
RGD:2317729
NCBI chr X:151,216,483...151,289,069
Ensembl chr X:151,216,507...151,286,775
G
Atp2b4
ATPase plasma membrane Ca2+ transporting 4
IEP
RGD
PMID:16079002
RGD:2317729
NCBI chr13:45,156,137...45,255,292
Ensembl chr13:45,156,146...45,255,246
G
Bsg
basigin (Ok blood group)
involved_in
ISS ISO
GO_REF:0000024 (MGI:1888850|PMID:10967074), (MGI:1932603|PMID:11273674), (MGI:3610672|PMID:11853760)
UniProt RGD
PMID:10967074 PMID:11273674 PMID:11853760
GO_REF:0000024 MGI:1888850 MGI:1932603 MGI:3610672
NCBI chr 7:9,993,170...10,000,387
Ensembl chr 7:9,993,170...10,000,387
G
Casp2
caspase 2
IEP
RGD
PMID:9809666
RGD:4107085
NCBI chr 4:71,149,632...71,167,388
Ensembl chr 4:71,149,669...71,167,379
G
Gpm6a
glycoprotein m6a
involved_in
ISS ISO
GO_REF:0000024 (MGI:3811956|PMID:18776950)
UniProt RGD
PMID:18776950
GO_REF:0000024 MGI:3811956
NCBI chr16:36,641,282...36,973,377
Ensembl chr16:36,641,284...36,973,475
G
Ndp
norrin cystine knot growth factor NDP
acts_upstream_of_or_within
ISO
MGI:2676199 (PMID:15716406)
RGD
PMID:15716406
NCBI chr X:5,796,487...5,820,934
Ensembl chr X:5,796,487...5,820,934
G
Optn
optineurin
IEP
RGD
PMID:17687037
RGD:7800681
NCBI chr17:73,209,572...73,260,251
Ensembl chr17:73,209,575...73,260,251
G
Psen1
presenilin 1
IEP
RGD
PMID:12401445
RGD:729595
NCBI chr 6:103,323,052...103,375,088
Ensembl chr 6:103,323,120...103,371,650
G
Rpe65
retinoid isomerohydrolase RPE65
IDA
RGD
PMID:2631392
RGD:9585660
NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403
G
Slc17a6
solute carrier family 17 member 6
IEP
RGD
PMID:18482716
RGD:9999162
NCBI chr 1:101,212,489...101,252,543
Ensembl chr 1:101,212,489...101,252,542
G
Slc17a7
solute carrier family 17 member 7
IEP
RGD
PMID:18482716
RGD:9999162
NCBI chr 1:95,649,709...95,661,591
Ensembl chr 1:95,649,745...95,661,588
G
Slc17a8
solute carrier family 17 member 8
IEP
RGD
PMID:18482716
RGD:9999162
NCBI chr 7:23,994,212...24,049,498
Ensembl chr 7:23,994,217...24,048,079
G
Smarca4
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
involved_in
ISO IEA
(PMID:18816825) GO_REF:0000107
RGD Ensembl
PMID:18816825
GO_REF:0000107
NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
G
Smarcd3
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
involved_in
ISO
(PMID:18816825) (MGI:3809321|PMID:18816825)
RGD
PMID:18816825
MGI:3809321
NCBI chr 4:10,548,693...10,580,334
Ensembl chr 4:10,548,751...10,580,326
G
Tgfb2
transforming growth factor, beta 2
involved_in
ISO
(MGI:894212|PMID:9217007)
RGD
PMID:9217007
MGI:894212
NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
G
Barhl2
BarH-like homeobox 2
acts_upstream_of_or_within
ISO
(PMID:14998930)
RGD
PMID:14998930
NCBI chr14:3,340,465...3,345,362
Ensembl chr14:3,340,465...3,345,353
G
Bhlhe22
basic helix-loop-helix family, member e22
acts_upstream_of_or_within
ISO
MGI:3707409 (PMID:17092954)
RGD
PMID:17092954
NCBI chr 2:100,486,400...100,489,510
Ensembl chr 2:100,486,400...100,489,510
G
Foxn4
forkhead box N4
acts_upstream_of_or_within
ISO
MGI:3054789 (PMID:15363391)
RGD
PMID:15363391
NCBI chr12:42,336,706...42,359,932
Ensembl chr12:42,340,323...42,359,921
G
Gdf11
growth differentiation factor 11
acts_upstream_of
ISO
(PMID:15976303)
RGD
PMID:15976303
NCBI chr 7:1,311,732...1,325,211
Ensembl chr 7:1,311,732...1,320,725
G
Hes1
hes family bHLH transcription factor 1
involved_in acts_upstream_of
IEA ISO
GO_REF:0000107 MGI:2149672 (PMID:16038893)
Ensembl RGD
PMID:16038893
GO_REF:0000107
NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192
G
Ikzf1
IKAROS family zinc finger 1
acts_upstream_of_or_within
ISO
(PMID:25654255)
RGD
PMID:25654255
NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416
G
Miat
myocardial infarction associated transcript
acts_upstream_of_or_within
ISO
(PMID:20459797)
RGD
PMID:20459797
NCBI chr12:44,414,620...44,429,852
G
Neurod1
neuronal differentiation 1
involved_in
ISS ISO
GO_REF:0000024 (MGI:2158684|PMID:11861467)
UniProt RGD
PMID:11861467
GO_REF:0000024 MGI:2158684
NCBI chr 3:64,359,554...64,363,526
Ensembl chr 3:64,359,395...64,363,649
G
Neurod4
neuronal differentiation 4
involved_in
ISO
(MGI:2158684|PMID:11861467)
RGD
PMID:11861467
MGI:2158684
NCBI chr 7:7,090,048...7,102,018
Ensembl chr 7:7,090,045...7,102,030
G
Ptf1a
pancreas associated transcription factor 1a
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:3701996 (PMID:17301087) (MGI:3691257|PMID:17075007)
UniProt RGD
PMID:17075007 PMID:17301087
GO_REF:0000024 MGI:3691257
NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135
G
Rorb
RAR-related orphan receptor B
involved_in
ISS ISO
GO_REF:0000024 (MGI:5546314|PMID:23652001)
UniProt RGD
PMID:23652001
GO_REF:0000024 MGI:5546314
NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390
G
Tgif1
TGFB-induced factor homeobox 1
acts_upstream_of
ISO
(PMID:18973577)
RGD
PMID:18973577
NCBI chr 9:110,748,094...110,757,714
Ensembl chr 9:110,720,921...110,757,802
G
Tgif2
TGFB-induced factor homeobox 2
acts_upstream_of
ISO
(PMID:18926818)
RGD
PMID:18926818
NCBI chr 3:145,333,152...145,348,599
Ensembl chr 3:145,333,418...145,348,596
G
Dscam
DS cell adhesion molecule
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr11:35,921,924...36,507,100
Ensembl chr11:35,926,896...36,507,415
G
Prom1
prominin 1
involved_in
ISO IBA
(PMID:18654668) GO_REF:0000033 (MGI:3838023|PMID:19228982)
RGD GO_Central
PMID:18654668 PMID:19228982
GO_REF:0000033 MGI:3838023
NCBI chr14:66,989,545...67,094,534
Ensembl chr14:66,990,160...67,094,527
G
Rom1
retinal outer segment membrane protein 1
acts_upstream_of_or_within
ISO
(PMID:20300562)
RGD
PMID:20300562
NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175
G
Sdk2
sidekick cell adhesion molecule 2
involved_in
ISO
(MGI:5693671|PMID:26287463)
RGD
PMID:26287463
MGI:5693671
NCBI chr10:98,824,916...99,102,590
Ensembl chr10:98,828,348...99,101,759
G
Slc4a7
solute carrier family 4 member 7
acts_upstream_of_or_within
ISO
GO:0060219 (PMID:12808454)
RGD
PMID:12808454
NCBI chr15:10,585,307...10,664,780
Ensembl chr15:10,588,979...10,664,781
G
Ttc8
tetratricopeptide repeat domain 8
acts_upstream_of_or_within
ISO
MGI:5140723 (PMID:21646512)
RGD
PMID:21646512
NCBI chr 6:118,198,186...118,252,422
Ensembl chr 6:118,198,201...118,252,418
G
Ihh
Indian hedgehog signaling molecule
acts_upstream_of_or_within
ISO
MGI:1934258 (PMID:18582859)
RGD
PMID:18582859
NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
G
Gnat2
G protein subunit alpha transducin 2
acts_upstream_of_or_within
ISO
MGI:5051274|MGI:6163746 (PMID:23580486), (PMID:29518352)
RGD
PMID:23580486 PMID:29518352
NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
G
Naglu
N-acetyl-alpha-glucosaminidase
acts_upstream_of_or_within
ISO
MGI:1934018 (PMID:26607664)
RGD
PMID:26607664
NCBI chr10:86,001,545...86,009,049
Ensembl chr10:86,001,566...86,008,972
G
Ndp
norrin cystine knot growth factor NDP
acts_upstream_of_or_within
ISO
MGI:2676199 (PMID:9071226)
RGD
PMID:9071226
NCBI chr X:5,796,487...5,820,934
Ensembl chr X:5,796,487...5,820,934
G
Casz1
castor zinc finger 1
acts_upstream_of_or_within
ISO
MGI:3052661|MGI:4841554 (PMID:25654255)
RGD
PMID:25654255
NCBI chr 5:159,243,965...159,393,935
Ensembl chr 5:159,243,995...159,393,400
G
Gdf11
growth differentiation factor 11
acts_upstream_of_or_within
ISO
(PMID:15976303)
RGD
PMID:15976303
NCBI chr 7:1,311,732...1,325,211
Ensembl chr 7:1,311,732...1,320,725
G
Hes1
hes family bHLH transcription factor 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2149672 (PMID:16038893)
Ensembl RGD
PMID:16038893
GO_REF:0000107
NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192
G
Pou4f2
POU class 4 homeobox 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:5316576|PMID:21875655)
UniProt RGD
PMID:21875655
GO_REF:0000024 MGI:5316576
NCBI chr19:29,486,686...29,490,327
Ensembl chr19:29,486,686...29,490,327
G
Casz1
castor zinc finger 1
acts_upstream_of_or_within
ISO
MGI:3052661|MGI:4841554 (PMID:25654255)
RGD
PMID:25654255
NCBI chr 5:159,243,965...159,393,935
Ensembl chr 5:159,243,995...159,393,400
G
Dlx1
distal-less homeobox 1
involved_in
ISS ISO IEA
GO_REF:0000024 (MGI:5316576|PMID:21875655) GO_REF:0000107
UniProt RGD Ensembl
PMID:21875655
GO_REF:0000024 GO_REF:0000107 MGI:5316576
NCBI chr 3:56,356,190...56,360,780
Ensembl chr 3:56,356,190...56,360,780
G
Dlx2
distal-less homeobox 2
involved_in
ISS ISO IEA
GO_REF:0000024 (MGI:5316576|PMID:21875655) GO_REF:0000107
UniProt RGD Ensembl
PMID:21875655
GO_REF:0000024 GO_REF:0000107 MGI:5316576
NCBI chr 3:56,370,238...56,373,581
Ensembl chr 3:56,370,483...56,373,597
G
Tgif1
TGFB-induced factor homeobox 1
acts_upstream_of_or_within
ISO
(PMID:18973577)
RGD
PMID:18973577
NCBI chr 9:110,748,094...110,757,714
Ensembl chr 9:110,720,921...110,757,802
G
Tgif2
TGFB-induced factor homeobox 2
acts_upstream_of_or_within
ISO
(PMID:18926818)
RGD
PMID:18926818
NCBI chr 3:145,333,152...145,348,599
Ensembl chr 3:145,333,418...145,348,596
G
Dll4
delta like canonical Notch ligand 4
involved_in
ISO IEA
(MGI:5314555|PMID:22323600) GO_REF:0000107
RGD Ensembl
PMID:22323600
GO_REF:0000107 MGI:5314555
NCBI chr 3:106,317,114...106,327,004
Ensembl chr 3:106,316,986...106,326,931
G
Ptf1a
pancreas associated transcription factor 1a
involved_in
ISS ISO
GO_REF:0000024 (MGI:3691257|PMID:17075007)
UniProt RGD
PMID:17075007
GO_REF:0000024 MGI:3691257
NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135
G
Six3
SIX homeobox 3
involved_in
ISO
(MGI:4837018|PMID:20890044)
RGD
PMID:20890044
MGI:4837018
NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301
G
Ahi1
Abelson helper integration site 1
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041
G
Arl6
ADP-ribosylation factor like GTPase 6
acts_upstream_of_or_within
ISO
MGI:4442928|MGI:5310744 (PMID:20333246), (PMID:22139371)
RGD
PMID:20333246 PMID:22139371
NCBI chr11:40,711,878...40,738,254
Ensembl chr11:40,712,022...40,737,937
G
Atp8a2
ATPase phospholipid transporting 8A2
involved_in
ISO
(MGI:5574432|PMID:24413176)
RGD
PMID:24413176
MGI:5574432
NCBI chr15:33,817,309...34,350,193
Ensembl chr15:33,819,755...34,350,223
G
Calb1
calbindin 1
involved_in
ISO
(MGI:1353814|PMID:10741426)
RGD
PMID:10741426
MGI:1353814
NCBI chr 5:29,375,624...29,402,532
Ensembl chr 5:29,375,642...29,402,431
G
Crb1
crumbs cell polarity complex component 1
acts_upstream_of_or_within
ISO
(PMID:17234588)
RGD
PMID:17234588
NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261
G
Dscam
DS cell adhesion molecule
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr11:35,921,924...36,507,100
Ensembl chr11:35,926,896...36,507,415
G
Fat3
FAT atypical cadherin 3
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1341907 (PMID:21903076)
Ensembl RGD
PMID:21903076
GO_REF:0000107
NCBI chr 8:12,691,470...13,274,336
Ensembl chr 8:12,694,019...13,273,135
G
Fjx1
four-jointed box kinase 1
acts_upstream_of_or_within
ISO
MGI:2444314 (PMID:21903076)
RGD
PMID:21903076
NCBI chr 3:88,774,220...88,776,321
Ensembl chr 3:88,774,220...88,776,321
G
Foxn4
forkhead box N4
involved_in
ISO
(MGI:3054139|PMID:15363391)
RGD
PMID:15363391
MGI:3054139
NCBI chr12:42,336,706...42,359,932
Ensembl chr12:42,340,323...42,359,921
G
Hipk1
homeodomain interacting protein kinase 1
involved_in
IEA ISO
GO_REF:0000107 (MGI:4818711|PMID:20579985)
Ensembl RGD
PMID:20579985
GO_REF:0000107 MGI:4818711
NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902
G
Hipk2
homeodomain interacting protein kinase 2
involved_in
ISO
(MGI:4818711|PMID:20579985)
RGD
PMID:20579985
MGI:4818711
NCBI chr 4:67,439,327...67,619,223
Ensembl chr 4:67,440,501...67,619,223
G
Irx6
iroquois homeobox 6
acts_upstream_of_or_within
ISO
MGI:5448232 (PMID:23172916)
RGD
PMID:23172916
NCBI chr19:14,330,440...14,336,403
Ensembl chr19:14,330,440...14,336,403
G
Large1
LARGE xylosyl- and glucuronyltransferase 1
acts_upstream_of_or_within
ISO
MGI:1856965|MGI:3510641 (PMID:16111892)
RGD
PMID:16111892
NCBI chr19:11,603,129...12,048,930
Ensembl chr19:11,603,129...12,048,930
G
Lhx1
LIM homeobox 1
involved_in
ISS ISO
GO_REF:0000024 (MGI:1353814|PMID:10741426), (MGI:3772525|PMID:18094249)
UniProt RGD
PMID:10741426 PMID:18094249
GO_REF:0000024 MGI:1353814 MGI:3772525
NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617
G
Megf11
multiple EGF-like-domains 11
involved_in
ISO
(MGI:5316136|PMID:22407321)
RGD
PMID:22407321
MGI:5316136
NCBI chr 8:64,892,312...65,218,984
Ensembl chr 8:64,892,387...65,216,061
G
Mir145
microRNA 145
IMP
RGD
PMID:34291866
RGD:155260301
NCBI chr18:55,099,640...55,099,727
Ensembl chr18:55,099,640...55,099,727
G
Ndp
norrin cystine knot growth factor NDP
acts_upstream_of_or_within
ISO
MGI:2676199 (PMID:29654250)
RGD
PMID:29654250
NCBI chr X:5,796,487...5,820,934
Ensembl chr X:5,796,487...5,820,934
G
Prom1
prominin 1
involved_in
ISO
(MGI:3838023|PMID:19228982)
RGD
PMID:19228982
MGI:3838023
NCBI chr14:66,989,545...67,094,534
Ensembl chr14:66,990,160...67,094,527
G
Ptf1a
pancreas associated transcription factor 1a
involved_in
ISS ISO
GO_REF:0000024 (MGI:3691257|PMID:17075007)
UniProt RGD
PMID:17075007
GO_REF:0000024 MGI:3691257
NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135
G
Ptprm
protein tyrosine phosphatase, receptor type, M
involved_in
ISS ISO
GO_REF:0000024 (PMID:14623235)
UniProt RGD
PMID:14623235
GO_REF:0000024
NCBI chr 9:106,639,573...107,343,698
Ensembl chr 9:106,639,573...107,343,698
G
Rdh13
retinol dehydrogenase 13
acts_upstream_of_or_within
ISO
MGI:5467544 (PMID:22605914)
RGD
PMID:22605914
NCBI chr 1:69,373,014...69,401,454
Ensembl chr 1:69,373,113...69,400,908
G
Rs1
retinoschisin 1
acts_upstream_of_or_within
ISO
MGI:2179757|MGI:3056058 (PMID:11983912), (PMID:15326152)
RGD
PMID:11983912 PMID:15326152
NCBI chr X:33,962,440...33,992,203
Ensembl chr X:33,963,657...33,992,115
G
Sdk2
sidekick cell adhesion molecule 2
involved_in
ISO
(MGI:5693671|PMID:26287463)
RGD
PMID:26287463
MGI:5693671
NCBI chr10:98,824,916...99,102,590
Ensembl chr10:98,828,348...99,101,759
G
Slc1a1
solute carrier family 1 member 1
acts_upstream_of_or_within involved_in
ISO
MGI:2655190 (PMID:19766171) MGI:2655190 (PMID:29677370)
RGD
PMID:19766171 PMID:29677370
NCBI chr 1:226,549,932...226,631,925
Ensembl chr 1:226,549,842...226,630,402
G
Tfap2a
transcription factor AP-2 alpha
involved_in
ISO
(PMID:20607706)
RGD
PMID:20607706
NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
G
Tfap2b
transcription factor AP-2 beta
involved_in
ISO
(PMID:20607706)
RGD
PMID:20607706
NCBI chr 9:21,786,251...21,816,054
Ensembl chr 9:21,786,258...21,814,520
G
Tspan12
tetraspanin 12
involved_in
ISS ISO
GO_REF:0000024 (MGI:4410396|PMID:19837033)
UniProt RGD
PMID:19837033
GO_REF:0000024 MGI:4410396
NCBI chr 4:50,313,768...50,389,246
Ensembl chr 4:50,313,772...50,389,246
G
Bhlhe22
basic helix-loop-helix family, member e22
acts_upstream_of_or_within
ISO
MGI:3707409 (PMID:17092954)
RGD
PMID:17092954
NCBI chr 2:100,486,400...100,489,510
Ensembl chr 2:100,486,400...100,489,510
G
Cabp4
calcium binding protein 4
acts_upstream_of_or_within
ISO
MGI:3056615 (PMID:16249514)
RGD
PMID:16249514
NCBI chr 1:201,428,671...201,442,950
Ensembl chr 1:201,428,672...201,433,172
G
Casz1
castor zinc finger 1
acts_upstream_of_or_within
ISO
(PMID:24467707)
RGD
PMID:24467707
NCBI chr 5:159,243,965...159,393,935
Ensembl chr 5:159,243,995...159,393,400
G
Ikzf1
IKAROS family zinc finger 1
acts_upstream_of_or_within
ISO
(PMID:25654255)
RGD
PMID:25654255
NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416
G
Irx5
iroquois homeobox 5
acts_upstream_of_or_within
ISO
MGI:1890816 (PMID:18322081)
RGD
PMID:18322081
NCBI chr19:14,639,052...14,643,911
Ensembl chr19:14,624,225...14,642,318
G
Irx6
iroquois homeobox 6
acts_upstream_of_or_within
ISO
MGI:5448232 (PMID:23172916)
RGD
PMID:23172916
NCBI chr19:14,330,440...14,336,403
Ensembl chr19:14,330,440...14,336,403
G
Prdm1
PR/SET domain 1
acts_upstream_of_or_within
ISO
MGI:3052661|MGI:3605621 (PMID:28199486)
RGD
PMID:28199486
NCBI chr20:47,959,858...47,981,488
Ensembl chr20:47,959,858...47,981,488
G
Vsx1
visual system homeobox 1
acts_upstream_of_or_within
ISO
MGI:1859086|MGI:3033929|MGI:3040317 (PMID:14745032), (PMID:15043821), (PMID:18322081)
RGD
PMID:14745032 PMID:15043821 PMID:18322081
NCBI chr 3:139,514,270...139,521,869
Ensembl chr 3:139,514,270...139,521,869
G
Vsx2
visual system homeobox 2
acts_upstream_of_or_within
ISO
MGI:1856112 (PMID:8630490)
RGD
PMID:8630490
NCBI chr 6:104,214,842...104,240,264
Ensembl chr 6:104,217,230...104,240,018
G
Zhx2
zinc fingers and homeoboxes 2
involved_in
ISO
(MGI:6214404|PMID:30146259)
RGD
PMID:30146259
MGI:6214404
NCBI chr 7:89,226,358...89,374,266
Ensembl chr 7:89,226,463...89,374,378
G
Ahi1
Abelson helper integration site 1
involved_in
ISO
(MGI:4437526|PMID:20081859)
RGD
PMID:20081859
MGI:4437526
NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041
G
Cabp4
calcium binding protein 4
acts_upstream_of_or_within
ISO
MGI:3056615 (PMID:16249514)
RGD
PMID:16249514
NCBI chr 1:201,428,671...201,442,950
Ensembl chr 1:201,428,672...201,433,172
G
Cnga3
cyclic nucleotide gated channel subunit alpha 3
acts_upstream_of_or_within
ISO
MGI:3608770 (PMID:21052544)
RGD
PMID:21052544
NCBI chr 9:39,447,534...39,494,044
Ensembl chr 9:39,448,034...39,493,183
G
Crb2
crumbs cell polarity complex component 2
involved_in
ISO
(MGI:5461109|PMID:23001562)
RGD
PMID:23001562
MGI:5461109
NCBI chr 3:21,542,138...21,564,876
Ensembl chr 3:21,542,221...21,563,294
G
Dio3
iodothyronine deiodinase 3
acts_upstream_of acts_upstream_of_or_within
ISO
(PMID:20203194) MGI:2664293 (PMID:20203194)
RGD
PMID:20203194
NCBI chr 6:129,285,747...129,287,608
Ensembl chr 6:129,285,749...129,286,660
G
Gnat2
G protein subunit alpha transducin 2
acts_upstream_of_or_within
ISO
MGI:3588845 (PMID:17065522), (PMID:21052544)
RGD
PMID:17065522 PMID:21052544
NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
G
Hcn1
hyperpolarization-activated cyclic nucleotide-gated potassium channel 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:21052544)
Ensembl RGD
PMID:21052544
GO_REF:0000107
NCBI chr 2:49,495,771...49,899,983
Ensembl chr 2:49,495,771...49,899,774
G
Mir124-1
microRNA 124-1
acts_upstream_of_or_within
ISO
MGI:3618700|MGI:5307015|MGI:5307017 (PMID:21857657)
RGD
PMID:21857657
NCBI chr15:38,842,014...38,842,098
Ensembl chr15:38,842,014...38,842,098
G
Mir124-2
microRNA 124-2
acts_upstream_of_or_within
ISO
MGI:2676807 (PMID:21857657)
RGD
PMID:21857657
NCBI chr 2:100,134,866...100,134,974
Ensembl chr 2:100,134,866...100,134,974
G
Mir183
microRNA 183
acts_upstream_of_or_within
ISO
MGI:2676846|MGI:3619440 (PMID:23341629)
RGD
PMID:23341629
NCBI chr 4:58,788,614...58,788,723
Ensembl chr 4:58,788,614...58,788,723
G
Mir96
microRNA 96
acts_upstream_of_or_within
ISO
MGI:2676846|MGI:2676847 (PMID:23341629)
RGD
PMID:23341629
NCBI chr 4:58,788,411...58,788,516
Ensembl chr 4:58,788,411...58,788,516
G
Pde6c
phosphodiesterase 6C
acts_upstream_of_or_within
ISO
(PMID:21052544)
RGD
PMID:21052544
NCBI chr 1:235,909,583...235,965,435
Ensembl chr 1:235,909,775...235,965,315
G
Rorb
RAR-related orphan receptor B
involved_in
ISS ISO IEA
GO_REF:0000024 (MGI:3652638|PMID:16574740) GO_REF:0000107
UniProt RGD Ensembl
PMID:16574740
GO_REF:0000024 GO_REF:0000107 MGI:3652638
NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390
G
Rp1
RP1, axonemal microtubule associated
involved_in
ISO
(MGI:2676521|PMID:14507858)
RGD
PMID:14507858
MGI:2676521
NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363
G
Thrb
thyroid hormone receptor beta
involved_in acts_upstream_of
IEA ISO
GO_REF:0000107 (PMID:20203194)
Ensembl RGD
PMID:20203194
GO_REF:0000107
NCBI chr15:7,685,180...8,031,920
Ensembl chr15:7,685,180...7,882,916
G
Thy1
Thy-1 cell surface antigen
involved_in
ISS ISO
GO_REF:0000024 (MGI:1349255|PMID:10567740)
UniProt RGD
PMID:10567740
GO_REF:0000024 MGI:1349255
NCBI chr 8:44,389,495...44,394,688
Ensembl chr 8:44,389,513...44,394,659
G
Ush1c
USH1 protein network component harmonin
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:96,695,303...96,743,671
Ensembl chr 1:96,695,307...96,743,671
G
Bbs10
Bardet-Biedl syndrome 10
acts_upstream_of_or_within
ISO
(PMID:36125046)
RGD
PMID:36125046
NCBI chr 7:46,751,028...46,754,132
Ensembl chr 7:46,750,993...46,754,141
G
Gnat1
G protein subunit alpha transducin 1
acts_upstream_of_or_within
ISO
MGI:2152779|MGI:95779 (PMID:19815523)
RGD
PMID:19815523
NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
G
Gnat2
G protein subunit alpha transducin 2
acts_upstream_of_or_within
ISO
MGI:3588845|MGI:95778 (PMID:19815523)
RGD
PMID:19815523
NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
G
Notch1
notch receptor 1
acts_upstream_of
ISO
MGI:1933835|MGI:3052237 (PMID:16452096)
RGD
PMID:16452096
NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
G
Ahi1
Abelson helper integration site 1
involved_in
ISO
(MGI:4437526|PMID:20081859)
RGD
PMID:20081859
MGI:4437526
NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041
G
Alms1
ALMS1, centrosome and basal body associated protein
acts_upstream_of_or_within
ISO
MGI:3576051 (PMID:16000322)
RGD
PMID:16000322
NCBI chr 4:118,125,581...118,226,005
Ensembl chr 4:118,125,607...118,226,005
G
Bbs4
Bardet-Biedl syndrome 4
acts_upstream_of_or_within
ISO
MGI:3045473 (PMID:15173597)
RGD
PMID:15173597
NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607
G
Bhlhe23
basic helix-loop-helix family, member e23
acts_upstream_of_or_within
ISO
MGI:3054837 (PMID:17255172)
RGD
PMID:17255172
NCBI chr 3:167,889,009...167,891,223
Ensembl chr 3:167,889,009...167,891,223
G
Cfh
complement factor H
acts_upstream_of_or_within
ISO
(PMID:17921253)
RGD
PMID:17921253
NCBI chr13:51,512,376...51,613,829
Ensembl chr13:51,511,828...51,613,838
G
Miat
myocardial infarction associated transcript
acts_upstream_of_or_within
ISO
MGI:3665263 (PMID:16877424)
RGD
PMID:16877424
NCBI chr12:44,414,620...44,429,852
G
Naglu
N-acetyl-alpha-glucosaminidase
acts_upstream_of_or_within
ISO
MGI:1934018 (PMID:17712420)
RGD
PMID:17712420
NCBI chr10:86,001,545...86,009,049
Ensembl chr10:86,001,566...86,008,972
G
Nrl
neural retina leucine zipper
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:2152376 (PMID:11694879)
GO_Central RGD
PMID:11694879
GO_REF:0000033
NCBI chr15:29,007,059...29,011,480
Ensembl chr15:29,008,104...29,009,832
G
Ntrk2
neurotrophic receptor tyrosine kinase 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3039928 (PMID:10516311)
Ensembl RGD
PMID:10516311
GO_REF:0000107
NCBI chr17:5,558,992...5,870,299
Ensembl chr17:5,559,043...5,869,136
G
Rorb
RAR-related orphan receptor B
involved_in
ISS ISO IEA
GO_REF:0000024 (MGI:3652638|PMID:16574740), (MGI:4366105|PMID:19805139) GO_REF:0000107
UniProt RGD Ensembl
PMID:16574740 PMID:19805139
GO_REF:0000024 GO_REF:0000107 MGI:3652638 MGI:4366105
NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390
G
Rp1
RP1, axonemal microtubule associated
involved_in
ISO
(MGI:2676521|PMID:14507858)
RGD
PMID:14507858
MGI:2676521
NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363
G
Rpgrip1
RPGR interacting protein 1
involved_in
IEA
GO_REF:0000118
TreeGrafter
GO_REF:0000118
NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605
G
Rpgrip1l
Rpgrip1-like
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr19:15,692,189...15,785,083
Ensembl chr19:15,692,150...15,785,083
G
Samd11
sterile alpha motif domain containing 11
involved_in
ISO
(MGI:6512737|PMID:33603070)
RGD
PMID:33603070
MGI:6512737
NCBI chr 5:166,831,681...166,859,805
Ensembl chr 5:166,831,663...166,850,009
G
Samd7
sterile alpha motif domain containing 7
involved_in
ISO
(MGI:6512737|PMID:33603070)
RGD
PMID:33603070
MGI:6512737
NCBI chr 2:112,623,135...112,644,269
Ensembl chr 2:112,624,942...112,639,549
G
Trpm1
transient receptor potential cation channel, subfamily M, member 1
acts_upstream_of_or_within
ISO
MGI:4421441 (PMID:19966281)
RGD
PMID:19966281
NCBI chr 1:117,718,896...117,835,434
Ensembl chr 1:117,718,896...117,834,605
G
Bbs10
Bardet-Biedl syndrome 10
acts_upstream_of_or_within
ISO
(PMID:36125046)
RGD
PMID:36125046
NCBI chr 7:46,751,028...46,754,132
Ensembl chr 7:46,750,993...46,754,141
G
Cntf
ciliary neurotrophic factor
involved_in acts_upstream_of
IEA ISO
GO_REF:0000107 (PMID:15207851)
Ensembl RGD
PMID:15207851
GO_REF:0000107
NCBI chr 1:209,887,854...209,889,877
Ensembl chr 1:209,887,854...209,889,877
G
Gnat1
G protein subunit alpha transducin 1
acts_upstream_of_or_within
ISO
MGI:2152779|MGI:95779 (PMID:19815523)
RGD
PMID:19815523
NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
G
Gnat2
G protein subunit alpha transducin 2
acts_upstream_of_or_within
ISO
MGI:3588845|MGI:95778 (PMID:19815523)
RGD
PMID:19815523
NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
G
Ndp
norrin cystine knot growth factor NDP
acts_upstream_of_or_within
ISO
MGI:2676199 (PMID:9071226)
RGD
PMID:9071226
NCBI chr X:5,796,487...5,820,934
Ensembl chr X:5,796,487...5,820,934
G
Ptn
pleiotrophin
IMP
RGD
PMID:16914133
RGD:9831439
NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456
G
Rorb
RAR-related orphan receptor B
acts_upstream_of_or_within
ISO
MGI:2158692 (PMID:25296752)
RGD
PMID:25296752
NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390
G
Sox8
SRY-box transcription factor 8
involved_in acts_upstream_of acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:98371 (PMID:19490914)
UniProt RGD
PMID:19490914
GO_REF:0000024
NCBI chr10:14,584,829...14,589,818
Ensembl chr10:14,584,829...14,589,818
G
Sox9
SRY-box transcription factor 9
involved_in acts_upstream_of acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:98370 (PMID:19490914)
UniProt RGD
PMID:19490914
GO_REF:0000024
NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
G
Stat3
signal transducer and activator of transcription 3
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:15207851)
Ensembl RGD
PMID:15207851
GO_REF:0000107
NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057
G
Casz1
castor zinc finger 1
acts_upstream_of_or_within
ISO
MGI:3052661|MGI:4841554 (PMID:25654255)
RGD
PMID:25654255
NCBI chr 5:159,243,965...159,393,935
Ensembl chr 5:159,243,995...159,393,400
G
Naglu
N-acetyl-alpha-glucosaminidase
acts_upstream_of_or_within
ISO
MGI:1934018 (PMID:26607664)
RGD
PMID:26607664
NCBI chr10:86,001,545...86,009,049
Ensembl chr10:86,001,566...86,008,972
G
Ptn
pleiotrophin
IEP
RGD
PMID:16914133
RGD:9831439
NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456
G
Rho
rhodopsin
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:4947230 (PMID:32960171)
Ensembl RGD
PMID:32960171
GO_REF:0000107
NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all