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ONTOLOGY REPORT - ANNOTATIONS

Term:atrial cardiac muscle tissue development
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Accession:GO:0003228 term browser browse the term
Definition:The process whose specific outcome is the progression of cardiac muscle of the atrium over time, from its formation to the mature structure.
Synonyms:exact_synonym: atrial myocardium development


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atrial cardiac muscle tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ednra endothelin receptor type A involved_in ISO MGI:3773698|MGI:4867385 (MGI:4850213|PMID:20929948) RGD PMID:20929948 MGI:4850213 NCBI chr19:30,233,540...30,303,727
Ensembl chr19:30,233,571...30,297,049 		JBrowse link
G Nkx2-5 NK2 homeobox 5 involved_in IEA
ISO		 GO_REF:0000107
(MGI:3783941|PMID:17234970)		 Ensembl
RGD		 PMID:17234970 GO_REF:0000107 MGI:3783941 NCBI chr10:16,340,428...16,347,004
Ensembl chr10:16,344,159...16,346,934 		JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO MGI:3052754 (MGI:3052278|PMID:15254239) RGD PMID:15254239 MGI:3052278 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:3698161 (MGI:3723556|PMID:17468179) RGD PMID:17468179 MGI:3723556 NCBI chr  X:136,123,662...136,134,295
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
atrial cardiac muscle tissue morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp10 bone morphogenetic protein 10 involved_in IEA
ISO		 GO_REF:0000107
(MGI:1332872|PMID:10072785)		 Ensembl
RGD		 PMID:10072785 GO_REF:0000107 MGI:1332872 NCBI chr 4:119,872,066...119,877,694
Ensembl chr 4:119,872,045...119,878,627 		JBrowse link
G Eng endoglin involved_in ISO (MGI:3721185|PMID:17628518) RGD PMID:17628518 MGI:3721185 NCBI chr 3:15,934,566...15,972,618
Ensembl chr 3:15,934,518...15,973,230 		JBrowse link
G Myh6 myosin heavy chain 6 involved_in IEA
ISO		 GO_REF:0000107
(PMID:15735645)		 Ensembl
RGD		 PMID:15735645 GO_REF:0000107 NCBI chr15:28,418,120...28,442,316
Ensembl chr15:28,417,616...28,441,720 		JBrowse link
G Nog noggin involved_in IEA
ISO		 GO_REF:0000107
(MGI:3783944|PMID:17218603)		 Ensembl
RGD		 PMID:17218603 GO_REF:0000107 MGI:3783944 NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Pitx2 paired-like homeodomain 2 acts_upstream_of_or_within ISO MGI:2136268 (MGI:2135655|PMID:11493526) RGD PMID:11493526 MGI:2135655 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (MGI:3830437|PMID:19091769) RGD PMID:19091769 MGI:3830437 NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
G Tnnt2 troponin T2, cardiac type acts_upstream_of_or_within ISO MGI:3692448|MGI:3692450|MGI:3692451 (MGI:1342889|PMID:10449439) RGD PMID:10449439 MGI:1342889 NCBI chr13:47,267,325...47,285,390
Ensembl chr13:47,267,204...47,285,388 		JBrowse link
G Wnt2 Wnt family member 2 acts_upstream_of_or_within ISO MGI:4361155 (MGI:4439199|PMID:20159597) RGD PMID:20159597 MGI:4439199 NCBI chr 4:46,328,408...46,374,673
Ensembl chr 4:46,333,998...46,374,402 		JBrowse link
sinoatrial node cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bves blood vessel epicardial substance acts_upstream_of_or_within ISO MGI:2385915 (MGI:5424322|PMID:22354168) RGD PMID:22354168 MGI:5424322 NCBI chr20:48,819,241...48,860,282
Ensembl chr20:48,822,308...48,857,472 		JBrowse link
G Isl1 ISL LIM homeobox 1 involved_in ISO (MGI:5688210|PMID:26193633) RGD PMID:26193633 MGI:5688210 NCBI chr 2:48,079,412...48,090,704
Ensembl chr 2:48,080,522...48,095,584 		JBrowse link
G Popdc2 popeye domain containing 2 acts_upstream_of_or_within ISO MGI:3773727 (MGI:5424322|PMID:22354168) RGD PMID:22354168 MGI:5424322 NCBI chr11:62,351,843...62,398,688
Ensembl chr11:62,374,759...62,390,756 		JBrowse link
G Shox2 short stature homeobox 2 involved_in ISO
IEA		 (MGI:5285465|PMID:21640717)
GO_REF:0000107		 RGD
Ensembl		 PMID:21640717 GO_REF:0000107 MGI:5285465 NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143 		JBrowse link
G Tbx18 T-box transcription factor 18 involved_in ISO (PMID:23242162) RGD PMID:23242162 NCBI chr 8:88,652,054...88,680,081
Ensembl chr 8:88,652,054...88,680,058 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in
acts_upstream_of_or_within		 ISO (PMID:22130515)
MGI:3710254 (MGI:4366226|PMID:19096026)		 RGD PMID:19096026 PMID:22130515 MGI:4366226 NCBI chr12:36,879,924...36,894,849
Ensembl chr12:36,881,445...36,893,708 		JBrowse link
sinoatrial node cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO (PMID:18297060) RGD PMID:18297060 NCBI chr 1:133,738,357...133,739,875
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
sinoatrial node cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbx18 T-box transcription factor 18 involved_in ISO (PMID:23242162) RGD PMID:23242162 NCBI chr 8:88,652,054...88,680,081
Ensembl chr 8:88,652,054...88,680,058 		JBrowse link
sinoatrial node development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata6 GATA binding protein 6 involved_in ISO
IEA		 MGI:2177784 (MGI:6492391|PMID:33443158)
GO_REF:0000107		 RGD
Ensembl		 PMID:33443158 GO_REF:0000107 MGI:6492391 NCBI chr18:2,188,121...2,219,532
Ensembl chr18:2,188,121...2,219,532 		JBrowse link
G Shox2 short stature homeobox 2 involved_in ISO (MGI:3836832|PMID:19166829) RGD PMID:19166829 MGI:3836832 NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143 		JBrowse link
G Tbx18 T-box transcription factor 18 acts_upstream_of_or_within ISO MGI:3714982 (MGI:4366226|PMID:19096026) RGD PMID:19096026 MGI:4366226 NCBI chr 8:88,652,054...88,680,081
Ensembl chr 8:88,652,054...88,680,058 		JBrowse link
G Tbx5 T-box transcription factor 5 involved_in ISO
IEA		 (MGI:2150876|PMID:11572777)
GO_REF:0000107		 RGD
Ensembl		 PMID:11572777 GO_REF:0000107 MGI:2150876 NCBI chr12:36,686,344...36,739,253
Ensembl chr12:36,688,014...36,734,885 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19738
    developmental process 6867
      anatomical structure development 6387
        animal organ development 3643
          heart development 732
            cardiac muscle tissue development 288
              atrial cardiac muscle tissue development 21
                atrial cardiac muscle tissue morphogenesis 8
                sinoatrial node development + 9
Path 2
Term Annotations click to browse term
  biological_process 19738
    developmental process 6867
      anatomical structure development 6387
        multicellular organism development 5151
          system development 4434
            circulatory system development 1342
              heart development 732
                cardiac muscle tissue development 288
                  atrial cardiac muscle tissue development 21
                    atrial cardiac muscle tissue morphogenesis 8
                    sinoatrial node development + 9
paths to the root