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ONTOLOGY REPORT - ANNOTATIONS


Term:cardiac chamber formation
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Accession:GO:0003207 term browser browse the term
Definition:The developmental process pertaining to the initial formation of a cardiac chamber from unspecified parts. A cardiac chamber is an enclosed cavity within the heart.
Synonyms:exact_synonym: heart chamber formation


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cardiac chamber formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Notch1 notch receptor 1 involved_in ISO (MGI:4837019|PMID:20890042) RGD PMID:20890042 MGI:4837019 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Tbx20 T-box transcription factor 20 acts_upstream_of_or_within
involved_in
ISO MGI:3580099 (MGI:4943647|PMID:19661464)
(MGI:3579960|PMID:15901664)
RGD PMID:15901664 PMID:19661464 MGI:3579960 MGI:4943647 NCBI chr 8:25,849,394...25,904,570
Ensembl chr 8:25,850,962...25,904,570
JBrowse link
cardiac atrium formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 involved_in IEA
ISO
GO_REF:0000107
(MGI:3640731|PMID:16730346)
Ensembl
RGD
PMID:16730346 GO_REF:0000107 MGI:3640731 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO (PMID:18297060) RGD PMID:18297060 NCBI chr 1:141,532,390...141,533,908
Ensembl chr 1:141,532,390...141,533,908
JBrowse link
cardiac left ventricle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hand1 heart and neural crest derivatives expressed 1 involved_in ISO (PMID:18276607) RGD PMID:18276607 NCBI chr10:43,250,729...43,253,296
Ensembl chr10:43,250,745...43,253,296
JBrowse link
G Tbx5 T-box transcription factor 5 involved_in IBA
ISO
IEA
PMID:21873635
(MGI:4356350|PMID:19727199)
GO_REF:0000107
RGD
Ensembl
PMID:19727199, PMID:21873635 GO_REF:0000107 MGI:4356350, RGD:13792537 NCBI chr12:42,059,688...42,148,226
Ensembl chr12:42,097,626...42,148,146
JBrowse link
cardiac right ventricle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hand1 heart and neural crest derivatives expressed 1 involved_in ISO (PMID:18276607) RGD PMID:18276607 NCBI chr10:43,250,729...43,253,296
Ensembl chr10:43,250,745...43,253,296
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 involved_in IEA
ISO
GO_REF:0000107
(MGI:1926848|PMID:11076755)
Ensembl
RGD
PMID:11076755 GO_REF:0000107 MGI:1926848 NCBI chr16:36,371,489...36,373,551
Ensembl chr16:36,371,489...36,373,546
JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO MGI:1933835|MGI:2447758 (MGI:4438134|PMID:19620969) RGD PMID:19620969 MGI:4438134 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 acts_upstream_of_or_within ISO MGI:2148567 (MGI:3828346|PMID:17519332) RGD PMID:17519332 MGI:3828346 NCBI chr 4:7,076,710...7,108,334
Ensembl chr 4:7,076,759...7,108,328
JBrowse link
cardiac ventricle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mef2c myocyte enhancer factor 2C involved_in
acts_upstream_of_or_within
ISO (MGI:3830899|PMID:16680724)
MGI:97350 (MGI:3820390|PMID:19035347)
RGD PMID:16680724 PMID:19035347 MGI:3820390 MGI:3830899 NCBI chr 2:11,658,534...11,822,788
Ensembl chr 2:11,658,568...11,822,787
JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO (PMID:18297060) RGD PMID:18297060 NCBI chr 1:141,532,390...141,533,908
Ensembl chr 1:141,532,390...141,533,908
JBrowse link
G Nkx2-5 NK2 homeobox 5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:99458 (MGI:3820390|PMID:19035347)
Ensembl
RGD
PMID:19035347 GO_REF:0000107 MGI:3820390 NCBI chr10:16,635,989...16,638,758
Ensembl chr10:16,635,989...16,638,764
JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
ISO
GO_REF:0000024
(MGI:5285157|PMID:20596238)
UniProt
RGD
PMID:20596238 GO_REF:0000024 MGI:5285157 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
G Sox4 SRY-box transcription factor 4 involved_in ISO (MGI:5285157|PMID:20596238) RGD PMID:20596238 MGI:5285157 NCBI chr17:37,615,022...37,619,728 JBrowse link
negative regulation of cardiac chamber formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbx2 T-box transcription factor 2 involved_in ISO (MGI:3039059|PMID:15042700) RGD PMID:15042700 MGI:3039059 NCBI chr10:73,278,932...73,290,764
Ensembl chr10:73,279,119...73,289,921
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19634
    developmental process 6783
      anatomical structure formation involved in morphogenesis 1215
        cardiac chamber formation 13
          bulbus arteriosus formation 0
          cardiac atrium formation + 2
          cardiac ventricle formation + 10
          conus arteriosus formation 0
          negative regulation of cardiac chamber formation + 1
          positive regulation of cardiac chamber formation + 0
          regulation of cardiac chamber formation + 1
          sinus venosus formation 0
Path 2
Term Annotations click to browse term
  biological_process 19634
    developmental process 6783
      anatomical structure development 6259
        multicellular organism development 5741
          system development 5284
            animal organ development 4050
              heart development 691
                heart morphogenesis 281
                  cardiac chamber morphogenesis 146
                    cardiac chamber formation 13
                      bulbus arteriosus formation 0
                      cardiac atrium formation + 2
                      cardiac ventricle formation + 10
                      conus arteriosus formation 0
                      negative regulation of cardiac chamber formation + 1
                      positive regulation of cardiac chamber formation + 0
                      regulation of cardiac chamber formation + 1
                      sinus venosus formation 0
paths to the root