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ONTOLOGY REPORT - ANNOTATIONS


Term:skeletal muscle contraction
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Accession:GO:0003009 term browser browse the term
Definition:A process in which force is generated within skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. In the skeletal muscle, the muscle contraction takes advantage of an ordered sarcomeric structure and in most cases it is under voluntary control.



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skeletal muscle contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07013776.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:239,898,492...239,898,935 JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 IEP RGD PMID:21993782 RGD:13782070 NCBI chr12:34,072,710...34,122,142
Ensembl chr12:34,072,683...34,122,101
JBrowse link
G Ccdc78 coiled-coil domain containing 78 involved_in ISO (PMID:22818856) RGD PMID:22818856 NCBI chr10:14,808,355...14,812,284
Ensembl chr10:14,807,710...14,812,282
JBrowse link
G Chrna1 cholinergic receptor nicotinic alpha 1 subunit involved_in IDA
ISO
(PMID:8872460) RGD PMID:8872460 PMID:22461452 RGD:8549758 NCBI chr 3:58,454,763...58,469,832
Ensembl chr 3:58,454,744...58,469,840
JBrowse link
G Chrnb1 cholinergic receptor nicotinic beta 1 subunit IDA RGD PMID:22461452 RGD:8549758 NCBI chr10:54,501,096...54,516,418
Ensembl chr10:54,501,093...54,516,345
JBrowse link
G Chrnd cholinergic receptor nicotinic delta subunit IDA RGD PMID:22461452 RGD:8549758 NCBI chr 9:87,862,417...87,870,833
Ensembl chr 9:87,862,407...87,870,833
JBrowse link
G Chrne cholinergic receptor nicotinic epsilon subunit IDA RGD PMID:22461452 RGD:8549758 NCBI chr10:55,331,211...55,339,923
Ensembl chr10:55,331,212...55,335,530
JBrowse link
G Chrng cholinergic receptor nicotinic gamma subunit IDA RGD PMID:22461452 RGD:8549758 NCBI chr 9:87,878,085...87,884,193
Ensembl chr 9:87,878,085...87,914,482
JBrowse link
G Chuk component of inhibitor of nuclear factor kappa B kinase complex IEP RGD PMID:15888549 RGD:2298664 NCBI chr 1:242,959,539...242,995,066
Ensembl chr 1:242,959,760...242,995,065
JBrowse link
G Eef2 eukaryotic translation elongation factor 2 IEP RGD PMID:19188248 RGD:10401231 NCBI chr 7:8,533,248...8,538,518
Ensembl chr 7:8,533,116...8,559,183
JBrowse link
G Homer1 homer scaffold protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3526529 (MGI:3784629|PMID:18268005)
Ensembl
RGD
PMID:18268005 GO_REF:0000107 MGI:3784629 NCBI chr 2:24,542,777...24,645,715
Ensembl chr 2:24,543,093...24,644,785
JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 IEP functional overload RGD PMID:20851858 RGD:5686398 NCBI chr 6:129,702,376...129,707,907
Ensembl chr 6:129,702,383...129,707,268
JBrowse link
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta IEP RGD PMID:15888549 RGD:2298664 NCBI chr16:69,319,487...69,373,251
Ensembl chr16:69,319,554...69,373,250
JBrowse link
G Jsrp1 junctional sarcoplasmic reticulum protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:8,889,486...8,906,055
Ensembl chr 7:8,901,609...8,906,055
JBrowse link
G Myh14 myosin heavy chain 14 involved_in ISO (PMID:21480433) RGD PMID:21480433 NCBI chr 1:95,096,266...95,158,861
Ensembl chr 1:95,096,266...95,158,836
JBrowse link
G Myh3 myosin heavy chain 3 involved_in ISO
IEA
(PMID:16642020)
GO_REF:0000107
RGD
Ensembl
PMID:16642020 GO_REF:0000107 NCBI chr10:51,770,177...51,793,994
Ensembl chr10:51,770,177...51,793,992
JBrowse link
G Myh7 myosin heavy chain 7 involved_in ISO
IEA
(PMID:7883988)
GO_REF:0000107
RGD
Ensembl
PMID:7883988 GO_REF:0000107 NCBI chr15:28,446,550...28,469,888
Ensembl chr15:28,446,550...28,468,217
JBrowse link
G Myh8 myosin heavy chain 8 involved_in ISO (PMID:17041932) RGD PMID:17041932 NCBI chr10:51,963,510...51,993,103
Ensembl chr10:51,963,510...51,993,232
JBrowse link
G Rcsd1 RCSD domain containing 1 involved_in IEP
IBA
PMID:15850461
PMID:21873635
BHF-UCL
GO_Central
PMID:15850461 PMID:21873635 RGD:8693359, RGD:13792537 NCBI chr13:77,901,898...77,964,336
Ensembl chr13:77,901,898...77,966,228
JBrowse link
G Rps6kb1 ribosomal protein S6 kinase B1 IEP RGD PMID:15033970 RGD:1643024 NCBI chr10:71,323,777...71,367,908
Ensembl chr10:71,323,777...71,367,908
JBrowse link
G Stac SH3 and cysteine rich domain involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:111,530,800...111,653,228
Ensembl chr 8:111,530,800...111,654,008
JBrowse link
G Stac2 SH3 and cysteine rich domain 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:83,032,417...83,048,260
Ensembl chr10:83,032,417...83,048,260
JBrowse link
G Stac3 SH3 and cysteine rich domain 3 involved_in IBA
ISO
PMID:21873635
(PMID:23736855)
RGD PMID:23736855 PMID:21873635 RGD:13792537 NCBI chr 7:63,343,078...63,350,590
Ensembl chr 7:63,343,186...63,350,589
JBrowse link
G Tcap titin-cap involved_in ISO (PMID:9817758) RGD PMID:9817758 NCBI chr10:83,381,719...83,382,887
Ensembl chr10:83,381,719...83,382,887
JBrowse link
G Tlr4 toll-like receptor 4 IEP RGD PMID:20007518 RGD:4144081 NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628
JBrowse link
G Tnf tumor necrosis factor IEP RGD PMID:20007518 RGD:4144081 NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
JBrowse link
G Tnnc1 troponin C1, slow skeletal and cardiac type involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:6,400,801...6,405,419
Ensembl chr16:6,402,171...6,405,634
JBrowse link
G Tnnc2 troponin C2, fast skeletal type involved_in ISO
IBA
(PMID:17194691)
PMID:21873635
RGD PMID:17194691 PMID:21873635 RGD:13792537 NCBI chr 3:153,513,272...153,516,033
Ensembl chr 3:153,513,271...153,516,029
JBrowse link
G Tnni1 troponin I1, slow skeletal type involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:47,229,217...47,241,640
Ensembl chr13:47,229,216...47,241,644
JBrowse link
G Tnni2 troponin I2, fast skeletal type involved_in IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:17194691)
Ensembl
RGD
PMID:17194691 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 1:197,595,012...197,597,554
Ensembl chr 1:197,594,813...197,597,560
JBrowse link
G Tnni3 troponin I3, cardiac type involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:69,299,900...69,303,582
Ensembl chr 1:69,299,900...69,303,580
JBrowse link
G Tnnt1 troponin T1, slow skeletal type involved_in ISO (PMID:10952871) RGD PMID:10952871 NCBI chr 1:69,306,362...69,316,721
Ensembl chr 1:69,306,362...69,316,721
JBrowse link
G Tnnt3 troponin T3, fast skeletal type involved_in ISO
IEA
IBA
(PMID:17194691)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:17194691 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 1:197,652,535...197,669,736
Ensembl chr 1:197,652,431...197,669,535
JBrowse link
diaphragm contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 IDA RGD PMID:17362795 RGD:4145100 NCBI chr18:55,642,459...55,644,501
Ensembl chr18:55,502,903...55,644,512
JBrowse link
G Gaa alpha glucosidase involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:16917947)
MGI:2148550 (MGI:3618942|PMID:15169761)
GO_REF:0000107
RGD
Ensembl
PMID:15169761 PMID:16917947 GO_REF:0000107 MGI:3618942 NCBI chr10:104,529,673...104,546,836
Ensembl chr10:104,529,747...104,546,836
JBrowse link
G Tnnc1 troponin C1, slow skeletal and cardiac type IDA RGD PMID:14985239 RGD:1598612 NCBI chr16:6,400,801...6,405,419
Ensembl chr16:6,402,171...6,405,634
JBrowse link
fast-twitch skeletal muscle fiber contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Synm synemin involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:5548847 (MGI:5661117|PMID:25567810)
RGD PMID:25567810 PMID:21873635 MGI:5661117, RGD:13792537 NCBI chr 1:121,333,712...121,363,652
Ensembl chr 1:121,333,720...121,363,652
JBrowse link
involuntary skeletal muscle contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp8a2 ATPase phospholipid transporting 8A2 acts_upstream_of_or_within ISO MGI:1856273 (MGI:60062|PMID:1634998) RGD PMID:1634998 MGI:60062 NCBI chr15:33,817,309...34,350,193
Ensembl chr15:33,819,755...34,350,223
JBrowse link
neurotransmitter secretion involved in regulation of skeletal muscle contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nr4a1 nuclear receptor subfamily 4, group A, member 1 IMP RGD PMID:29530712 RGD:40924655 NCBI chr 7:132,368,399...132,389,300
Ensembl chr 7:132,374,840...132,389,297
JBrowse link
positive regulation of fast-twitch skeletal muscle fiber contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn3 actinin alpha 3 involved_in ISO (MGI:3778600|PMID:18178581) RGD PMID:18178581 MGI:3778600 NCBI chr 1:202,159,081...202,175,012
Ensembl chr 1:202,159,082...202,175,012
JBrowse link
G Atp2a1 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 involved_in ISO
ISS
(PMID:12479237)
GO_REF:0000024
RGD
UniProt
PMID:12479237 GO_REF:0000024 NCBI chr 1:181,026,606...181,044,859
Ensembl chr 1:181,026,608...181,044,838
JBrowse link
G Mylk2 myosin light chain kinase 2 IMP RGD PMID:12748068 RGD:1580242 NCBI chr 3:141,376,450...141,388,357
Ensembl chr 3:141,376,691...141,387,728
JBrowse link
regulation of excitatory postsynaptic membrane potential involved in skeletal muscle contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bscl2 BSCL2 lipid droplet biogenesis associated, seipin acts_upstream_of_or_within ISO (MGI:5468741|PMID:23173741) RGD PMID:23173741 MGI:5468741 NCBI chr 1:205,731,814...205,743,430
Ensembl chr 1:205,733,872...205,743,421
JBrowse link
G Dmpk DM1 protein kinase acts_upstream_of_or_within ISO MGI:2182402 (MGI:3721737|PMID:11526199) RGD PMID:11526199 MGI:3721737 NCBI chr 1:78,730,255...78,740,585
Ensembl chr 1:78,730,275...78,740,593
JBrowse link
regulation of skeletal muscle contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cav3 caveolin 3 involved_in ISO (PMID:17524427) RGD PMID:17524427 NCBI chr 4:145,582,168...145,598,142
Ensembl chr 4:145,582,060...145,598,137
JBrowse link
G Dmd dystrophin involved_in ISO (MGI:3837615|PMID:19198614) RGD PMID:19198614 MGI:3837615 NCBI chr  X:47,272,324...49,504,219
Ensembl chr  X:47,272,331...49,504,207
JBrowse link
G Grcc10 gene rich cluster, C10 gene involved_in ISO (PMID:23453665), (PMID:23633300), (PMID:24798461) RGD PMID:23453665 PMID:23633300 PMID:24798461 NCBI chr 4:157,551,276...157,552,924 JBrowse link
G Slc8a3 solute carrier family 8 member A3 involved_in ISS
ISO
GO_REF:0000024
(MGI:3027331|PMID:14722618)
UniProt
RGD
PMID:14722618 GO_REF:0000024 MGI:3027331 NCBI chr 6:100,874,359...101,007,989
Ensembl chr 6:100,874,369...101,007,508
JBrowse link
regulation of skeletal muscle contraction by action potential term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Scn4a sodium voltage-gated channel alpha subunit 4 involved_in ISO
ISS
IEA
(PMID:12766226)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:12766226 GO_REF:0000024 GO_REF:0000107 NCBI chr10:91,246,936...91,296,670
Ensembl chr10:91,246,936...91,296,545
JBrowse link
regulation of skeletal muscle contraction by calcium ion signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmpk DM1 protein kinase involved_in ISO
IBA
(MGI:1097019|PMID:9294109)
PMID:21873635
RGD PMID:9294109 PMID:21873635 MGI:1097019, RGD:13792537 NCBI chr 1:78,730,255...78,740,585
Ensembl chr 1:78,730,275...78,740,593
JBrowse link
regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casq1 calsequestrin 1 involved_in
acts_upstream_of_or_within
ISS
ISO
IBA
GO_REF:0000024
(MGI:5306707|PMID:22049211)
MGI:3530841 (MGI:3814667|PMID:17627988)
PMID:21873635
UniProt
RGD
PMID:17627988 PMID:22049211 PMID:21873635 GO_REF:0000024 MGI:3814667 MGI:5306707, RGD:13792537 NCBI chr13:84,670,648...84,680,339
Ensembl chr13:84,670,649...84,680,339
JBrowse link
G Dmd dystrophin involved_in ISO (MGI:3837615|PMID:19198614) RGD PMID:19198614 MGI:3837615 NCBI chr  X:47,272,324...49,504,219
Ensembl chr  X:47,272,331...49,504,207
JBrowse link
regulation of skeletal muscle contraction via regulation of action potential term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kcnj2 potassium inwardly-rectifying channel, subfamily J, member 2 involved_in ISO (PMID:11371347) RGD PMID:11371347 NCBI chr10:96,060,849...96,071,401
Ensembl chr10:96,060,821...96,071,445
JBrowse link
regulation of slow-twitch skeletal muscle fiber contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC102546391 uncharacterized LOC102546391 involved_in ISO (MGI:5751610|PMID:26816378) RGD PMID:26816378 MGI:5751610 NCBI chr 2:147,935,219...147,938,083
Ensembl chr 2:147,935,222...147,938,083
JBrowse link
G Myh7 myosin heavy chain 7 involved_in IEA
ISO
GO_REF:0000107
(PMID:7883988)
Ensembl
RGD
PMID:7883988 GO_REF:0000107 NCBI chr15:28,446,550...28,469,888
Ensembl chr15:28,446,550...28,468,217
JBrowse link
regulation of the force of skeletal muscle contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn3 actinin alpha 3 involved_in ISO (MGI:3759354|PMID:17828264) RGD PMID:17828264 MGI:3759354 NCBI chr 1:202,159,081...202,175,012
Ensembl chr 1:202,159,082...202,175,012
JBrowse link
G Kbtbd13 kelch repeat and BTB domain containing 13 acts_upstream_of_or_within ISO MGI:6469320 (MGI:6460519|PMID:31671076)
(PMID:31671076)
RGD PMID:31671076 MGI:6460519 NCBI chr 8:65,909,821...65,911,558 JBrowse link
G Myh7 myosin heavy chain 7 involved_in IEA
ISO
GO_REF:0000107
(PMID:7883988)
Ensembl
RGD
PMID:7883988 GO_REF:0000107 NCBI chr15:28,446,550...28,469,888
Ensembl chr15:28,446,550...28,468,217
JBrowse link
slow-twitch skeletal muscle fiber contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mb myoglobin IEP RGD PMID:15981298 RGD:1582404 NCBI chr 7:108,759,903...108,767,134
Ensembl chr 7:108,759,904...108,767,383
JBrowse link
G Tnnt1 troponin T1, slow skeletal type involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:15788488 PMID:21873635 RGD:1599482, RGD:13792537 NCBI chr 1:69,306,362...69,316,721
Ensembl chr 1:69,306,362...69,316,721
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20091
    multicellular organismal process 8961
      multicellular organismal movement 70
        musculoskeletal movement 70
          skeletal muscle contraction 53
            involuntary skeletal muscle contraction + 4
            regulation of excitatory postsynaptic membrane potential involved in skeletal muscle contraction 2
            regulation of skeletal muscle contraction + 16
            voluntary skeletal muscle contraction + 8
Path 2
Term Annotations click to browse term
  biological_process 20091
    multicellular organismal process 8961
      system process 3560
        muscle system process 477
          muscle contraction 346
            striated muscle contraction 197
              skeletal muscle contraction 53
                involuntary skeletal muscle contraction + 4
                regulation of excitatory postsynaptic membrane potential involved in skeletal muscle contraction 2
                regulation of skeletal muscle contraction + 16
                voluntary skeletal muscle contraction + 8
paths to the root