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ONTOLOGY REPORT - ANNOTATIONS


Term:organ or tissue specific immune response
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Accession:GO:0002251 term browser browse the term
Definition:An immune response taking place in an organ or tissues such as the liver, brain, mucosa, or nervous system tissues.
Synonyms:exact_synonym: immune response in organ or tissue



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organ or tissue specific immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfh complement factor H acts_upstream_of_or_within ISO (PMID:20702729) RGD PMID:20702729 NCBI chr13:51,512,376...51,613,829
Ensembl chr13:51,511,828...51,613,838
JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO MGI:3052754 (PMID:24218451) RGD PMID:24218451 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796
JBrowse link
G Umod uromodulin acts_upstream_of_or_within ISO (PMID:28990932) RGD PMID:28990932 NCBI chr 1:173,816,341...173,829,681
Ensembl chr 1:173,816,339...173,830,302
JBrowse link
antigen transcytosis by M cells in mucosal-associated lymphoid tissue term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gp2 glycoprotein 2 acts_upstream_of_or_within ISO (PMID:19907495) RGD PMID:19907495 NCBI chr 1:173,797,057...173,812,619
Ensembl chr 1:173,797,057...173,812,619
JBrowse link
hepatic immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il6 interleukin 6 involved_in ISO (PMID:2444978) RGD PMID:2444978 NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178
JBrowse link
immune response in brain or nervous system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO MGI:3052754 (PMID:24218451) RGD PMID:24218451 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796
JBrowse link
immunoglobulin transcytosis in epithelial cells mediated by polymeric immunoglobulin receptor term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pigr polymeric immunoglobulin receptor involved_in IEA
ISS
ISO
IBA
GO_REF:0000107
GO_REF:0000024
(PMID:10229845), (PMID:22022593), (PMID:9379029)
GO_REF:0000033
Ensembl
UniProt
RGD
GO_Central
PMID:9379029 PMID:10229845 PMID:22022593 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr13:42,298,905...42,326,877
Ensembl chr13:42,298,914...42,326,875
JBrowse link
G Rab17 RAB17, member RAS oncogene family involved_in ISO (MGI:1266871|PMID:9624171) RGD PMID:9624171 MGI:1266871 NCBI chr 9:91,552,924...91,566,759
Ensembl chr 9:91,553,464...91,566,451
JBrowse link
innate immune response in mucosa term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoa4 apolipoprotein A4 involved_in IEA
ISO
GO_REF:0000107
(PMID:15254593)
(MGI:3046601|PMID:15254593)
Ensembl
RGD
PMID:15254593 GO_REF:0000107 MGI:3046601 NCBI chr 8:46,539,083...46,541,464
Ensembl chr 8:46,539,082...46,541,469
JBrowse link
G Bpifb1 BPI fold containing family B, member 1 involved_in ISO
IBA
IEA
(PMID:21900486)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107
RGD
GO_Central
TreeGrafter
Ensembl
PMID:21900486 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:142,672,995...142,706,258
Ensembl chr 3:142,672,995...142,706,256
JBrowse link
G Camp cathelicidin antimicrobial peptide involved_in ISO (PMID:12860195) RGD PMID:12860195 NCBI chr 8:109,841,729...109,843,543
Ensembl chr 8:109,841,729...109,843,543
JBrowse link
G Defa10 defensin alpha 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:70,513,892...70,516,234
Ensembl chr16:70,514,248...70,515,024
JBrowse link
G Defa11 defensin alpha 11 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:70,533,436...70,535,592
Ensembl chr16:70,533,436...70,535,604
JBrowse link
G Defa24 defensin alpha 24 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:70,349,550...70,350,582
Ensembl chr16:70,349,567...70,350,603
JBrowse link
G Defa5 defensin alpha 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:70,342,530...70,344,854
Ensembl chr16:70,342,530...70,344,836
JBrowse link
G Defa5-ps2 defensin alpha 5, pseudogene 2 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr16:70,391,781...70,392,695
Ensembl chr16:70,391,781...70,392,695
Ensembl chr16:70,391,781...70,392,695
JBrowse link
G Defa6 defensin alpha 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:70,405,223...70,406,237
Ensembl chr16:70,405,268...70,406,142
JBrowse link
G Defa7 defensin alpha 7 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr16:70,419,152...70,430,555
Ensembl chr16:70,419,277...70,420,046
JBrowse link
G Defa8 defensin alpha 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:70,433,121...70,434,154
Ensembl chr16:70,433,166...70,434,059
JBrowse link
G Defa9 defensin alpha 9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:70,481,813...70,482,803
Ensembl chr16:70,481,821...70,482,717
JBrowse link
G Defal1 defensin alpha-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:70,371,492...70,372,481
Ensembl chr16:70,371,518...70,372,353
JBrowse link
G Defb1 defensin beta 1 involved_in ISO
IBA
(PMID:12860195)
GO_REF:0000033
RGD
GO_Central
PMID:12860195 GO_REF:0000033 NCBI chr16:70,298,862...70,313,604
Ensembl chr16:70,298,863...70,313,604
JBrowse link
G Defb10 defensin beta 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:70,202,599...70,212,734
Ensembl chr16:70,202,655...70,212,707
JBrowse link
G Defb11 defensin beta 11 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:70,156,044...70,163,062
Ensembl chr16:70,156,141...70,163,068
JBrowse link
G Defb2 defensin beta 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:70,231,870...70,245,817
Ensembl chr16:70,231,945...70,245,784
JBrowse link
G Defb37 defensin beta 37 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:70,783,532...70,796,798
Ensembl chr16:70,783,554...70,796,892
JBrowse link
G Defb38 defensin beta 38 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:70,756,370...70,759,701
Ensembl chr16:70,756,409...70,759,641
JBrowse link
G Defb39 defensin beta 39 involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr16:70,740,347...70,744,157
Ensembl chr16:70,734,713...70,744,192
JBrowse link
G Defb40 defensin beta 40 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:70,824,419...70,827,502
Ensembl chr16:70,824,522...70,827,449
JBrowse link
G Defb9 defensin beta 9 involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr16:70,180,692...70,183,602
Ensembl chr16:70,180,771...70,183,554
JBrowse link
G Ear1 eosinophil-associated, ribonuclease A family, member 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:24,555,280...24,556,189
Ensembl chr15:24,555,298...24,556,199
JBrowse link
G Ear1l1 eosinophil-associated, ribonuclease A family, member 1 like 1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr15:24,486,827...24,487,702
Ensembl chr15:24,486,826...24,487,691
JBrowse link
G ENSRNOG00000064390 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr16:70,426,027...70,475,448 JBrowse link
G ENSRNOG00000069429 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr15:24,550,323...24,551,150 JBrowse link
G Fau FAU ubiquitin like and ribosomal protein S30 fusion involved_in ISO (PMID:12860195) RGD PMID:12860195 NCBI chr 1:203,350,226...203,351,741
Ensembl chr 1:203,350,189...203,351,742
JBrowse link
G H2bc12 H2B clustered histone 12 involved_in ISO (PMID:12860195) RGD PMID:12860195 NCBI chr17:42,485,699...42,486,162 JBrowse link
G H2bc18 H2B clustered histone 18 involved_in ISO (PMID:12860195) RGD PMID:12860195 NCBI chr 2:183,838,331...183,842,769
Ensembl chr 2:183,838,334...183,841,529
JBrowse link
G H2bc6 H2B clustered histone 6 involved_in ISO (PMID:12860195) RGD PMID:12860195 NCBI chr17:41,520,775...41,521,238 JBrowse link
G H2bc8 H2B clustered histone 8 involved_in ISO (PMID:12860195) RGD PMID:12860195 NCBI chr17:42,708,658...42,709,408 JBrowse link
G H2bc9 H2B clustered histone 9 involved_in ISO (PMID:12860195) RGD PMID:12860195 NCBI chr17:42,470,593...42,478,590 JBrowse link
G H2bu1 H2B.U histone 1 involved_in ISO (PMID:12860195) RGD PMID:12860195 NCBI chr10:43,732,737...43,733,484
Ensembl chr10:43,732,864...43,736,277
JBrowse link
G Hist1h2bc histone cluster 1, H2bc involved_in ISO (PMID:12860195) RGD PMID:12860195 NCBI chr17:42,692,335...42,696,601
Ensembl chr17:42,694,723...42,696,642
JBrowse link
G Hist1h2bd histone cluster 1 H2B family member D involved_in ISO (PMID:12860195) RGD PMID:12860195 NCBI chr17:42,792,887...42,793,268 JBrowse link
G Hist1h2bq histone cluster 1 H2B family member Q involved_in ISO (PMID:12860195) RGD PMID:12860195 NCBI chr17:41,432,100...41,441,487
Ensembl chr17:41,429,164...41,442,153
JBrowse link
G Hist2h2be histone cluster 2 H2B family member E involved_in ISO (PMID:12860195) RGD PMID:12860195 NCBI chr 2:183,780,583...183,783,030 JBrowse link
G Il4 interleukin 4 involved_in ISO (MGI:5009207|PMID:9973465) RGD PMID:9973465 MGI:5009207 NCBI chr10:37,771,203...37,776,750
Ensembl chr10:37,771,203...37,776,750
JBrowse link
G LOC100361866 eosinophil cationic protein-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:24,535,701...24,536,571
Ensembl chr15:24,535,700...24,536,592
JBrowse link
G LOC102549061 histone H2B type 1-N-like involved_in ISO (PMID:12860195) RGD PMID:12860195 NCBI chr17:41,380,056...41,380,686 JBrowse link
G Ltf lactotransferrin involved_in ISO (PMID:12037568) RGD PMID:12037568 NCBI chr 8:110,999,948...111,022,795
Ensembl chr 8:110,999,948...111,022,795
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 acts_upstream_of_or_within ISO MGI:3529594 (PMID:15692051) RGD PMID:15692051 NCBI chr19:18,382,369...18,422,817
Ensembl chr19:18,382,439...18,417,177
JBrowse link
G Np4 defensin NP-4 precursor involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr16:70,494,607...70,497,261
Ensembl chr16:70,342,529...70,497,202
JBrowse link
G Pla2g1b phospholipase A2 group IB involved_in ISO
IEA
(PMID:12860195)
GO_REF:0000107
RGD
Ensembl
PMID:12860195 GO_REF:0000107 NCBI chr12:41,142,193...41,151,967
Ensembl chr12:41,142,200...41,153,226
JBrowse link
G RatNP-3b defensin RatNP-3 precursor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:70,544,364...70,546,533
Ensembl chr16:70,513,888...70,546,522
JBrowse link
G Rnase17 ribonuclease 17 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:24,499,178...24,500,140
Ensembl chr15:24,499,178...24,500,095
JBrowse link
G Rnase2 ribonuclease A family member 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:24,449,618...24,450,427
Ensembl chr15:24,449,611...24,450,479
JBrowse link
G Rnase3 ribonuclease A family member 3 involved_in ISO
IBA
(PMID:12860195)
GO_REF:0000033
RGD
GO_Central
PMID:12860195 GO_REF:0000033 NCBI chr15:24,511,894...24,512,764
Ensembl chr15:24,511,891...24,512,790
JBrowse link
G Rpl39 ribosomal protein L39 involved_in ISO (PMID:12860195) RGD PMID:12860195 NCBI chr  X:116,327,216...116,330,211
Ensembl chr18:6,326,330...6,326,692
Ensembl chr  X:6,326,330...6,326,692
JBrowse link
mucosal immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd160 CD160 molecule involved_in ISO (MGI:5432939|PMID:22801499) RGD PMID:22801499 MGI:5432939 NCBI chr 2:184,340,820...184,383,421
Ensembl chr 2:184,340,599...184,375,834
JBrowse link
G Epg5 ectopic P-granules 5 autophagy tethering factor acts_upstream_of_or_within ISO (PMID:26764600) RGD PMID:26764600 NCBI chr18:71,403,990...71,502,079
Ensembl chr18:71,404,010...71,501,502
JBrowse link
G Ffar2 free fatty acid receptor 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:5575446|PMID:23665276)
UniProt
RGD
PMID:23665276 GO_REF:0000024 MGI:5575446 NCBI chr 1:86,071,855...86,075,049
Ensembl chr 1:86,072,184...86,075,033
JBrowse link
G Ffar3 free fatty acid receptor 3 involved_in ISO
ISS
(MGI:5575446|PMID:23665276)
GO_REF:0000024
RGD
UniProt
PMID:23665276 GO_REF:0000024 MGI:5575446 NCBI chr 1:86,105,388...86,106,728
Ensembl chr 1:86,104,920...86,106,849
JBrowse link
G Ifnl3 interferon, lambda 3 involved_in ISO (MGI:5009066|PMID:21518880) RGD PMID:21518880 MGI:5009066 NCBI chr 1:83,814,456...83,816,096
Ensembl chr 1:83,814,564...83,816,096
JBrowse link
G Ifnlr1 interferon, lambda receptor 1 involved_in ISO (MGI:5009066|PMID:21518880) RGD PMID:21518880 MGI:5009066 NCBI chr 5:147,919,547...147,942,328
Ensembl chr 5:147,919,908...147,942,332
JBrowse link
G Otud7b OTU deubiquitinase 7B involved_in ISO (MGI:5474156|PMID:23334419) RGD PMID:23334419 MGI:5474156 NCBI chr 2:183,661,955...183,722,584
Ensembl chr 2:183,662,163...183,718,674
JBrowse link
positive regulation of immunoglobulin production in mucosal tissue term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C10h17orf99 smilar to human chromosome 17 open reading frame 99 involved_in ISO (MGI:6103709|PMID:28978694) RGD PMID:28978694 MGI:6103709 NCBI chr10:103,015,371...103,027,407
Ensembl chr10:103,016,505...103,027,407
JBrowse link
G Xcl1 X-C motif chemokine ligand 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:5009207|PMID:9973465)
Ensembl
RGD
PMID:9973465 GO_REF:0000107 MGI:5009207 NCBI chr13:77,248,687...77,252,343
Ensembl chr13:77,248,717...77,252,329
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20292
    response to stimulus 10871
      immune response 2076
        organ or tissue specific immune response 65
          hepatic immune response 1
          immune response in brain or nervous system 1
          mucosal immune response + 61
paths to the root