ONTOLOGY REPORT - ANNOTATIONS
Term: somatic diversification of immune receptors
Accession: GO:0002200
browse the term
Definition: The somatic process allowing for the production of immune receptors whose specificity is not encoded in the germline genomic sequences.
Comment: Note that this process covers somatic recombination, gene conversion, hypermutation, N-region addition, and alternate splicing processes of immune receptor diversification.
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Polb
DNA polymerase beta
ISO
MGI:5427084 (MGI:5553198|PMID:24388753)
RGD
PMID:24388753
MGI:5553198
NCBI chr16:74,237,001...74,260,272
Ensembl chr16:74,237,001...74,260,271
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Yy1
YY1 transcription factor
ISO IEA
MGI:3624790 (MGI:5484711|PMID:23531880) GO_REF:0000107
RGD Ensembl
PMID:23531880
GO_REF:0000107 MGI:5484711
NCBI chr 6:132,702,443...132,726,848
Ensembl chr 6:132,702,448...132,727,046
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Foxp1
forkhead box P1
ISO
MGI:3711150 (MGI:3662963|PMID:16819554)
RGD
PMID:16819554
MGI:3662963
NCBI chr 4:131,362,178...131,963,466
Ensembl chr 4:131,366,744...131,694,755
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Lig4
DNA ligase 4
involved_in
ISO IBA
MGI:1857732 (MGI:1312981|PMID:9823897) PMID:21873635
RGD
PMID:9823897 , PMID:21873635 , PMID:21873635
MGI:1312981 , RGD:13792537 , RGD:13792537
NCBI chr16:85,331,771...85,339,496
Ensembl chr16:85,331,866...85,337,769
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Prkdc
protein kinase, DNA-activated, catalytic subunit
involved_in
ISO IBA
MGI:2383951 (MGI:1290043|PMID:9768755) PMID:21873635
RGD
PMID:9768755 , PMID:21873635 , PMID:21873635
MGI:1290043 , RGD:13792537 , RGD:13792537
NCBI chr11:89,293,547...89,510,948
Ensembl chr11:89,293,696...89,510,871
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Tcf3
transcription factor 3
involved_in
ISO IBA
(PMID:16428437) PMID:21873635 MGI:2178112 (MGI:3615721|PMID:16428437)
RGD
PMID:16428437 , PMID:21873635 , PMID:21873635
MGI:3615721 , RGD:13792537 , RGD:13792537
NCBI chr 7:12,146,642...12,168,400
Ensembl chr 7:12,144,162...12,168,410
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Xrcc4
X-ray repair cross complementing 4
involved_in
ISO IBA
MGI:1926771 (MGI:1913213|PMID:9875844) PMID:21873635
RGD
PMID:9875844 , PMID:21873635 , PMID:21873635
MGI:1913213 , RGD:13792537 , RGD:13792537
NCBI chr 2:18,674,496...18,927,463
Ensembl chr 2:18,677,220...18,927,365
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Aicda
activation-induced cytidine deaminase
ISO
(MGI:3761960|PMID:17713479), (MGI:5004983|PMID:21518874)
RGD
PMID:17713479 PMID:21518874
MGI:3761960 MGI:5004983
NCBI chr 4:155,359,909...155,371,104
Ensembl chr 4:155,359,921...155,369,671
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Atad5
ATPase family, AAA domain containing 5
ISO IEA
MGI:4127920 (MGI:5763555|PMID:25404367) GO_REF:0000107
RGD Ensembl
PMID:25404367
GO_REF:0000107 MGI:5763555
NCBI chr10:67,427,042...67,475,825
Ensembl chr10:67,427,066...67,473,649
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Batf
basic leucine zipper ATF-like transcription factor
involved_in
ISS ISO
GO_REF:0000024 (MGI:4456325|PMID:20421391), (MGI:5004732|PMID:21572431)
UniProt RGD
PMID:20421391 PMID:21572431
GO_REF:0000024 MGI:4456325 MGI:5004732
NCBI chr 6:109,562,415...109,584,541
Ensembl chr 6:109,562,587...109,584,545
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Cd40lg
CD40 ligand
involved_in
IEA ISO
GO_REF:0000107 (MGI:3687427|PMID:7529792)
Ensembl RGD
PMID:7529792
GO_REF:0000107 MGI:3687427
NCBI chr X:159,703,703...159,714,886
Ensembl chr X:159,703,578...159,716,562
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Ercc1
ERCC excision repair 1, endonuclease non-catalytic subunit
ISO
MGI:2183944 (MGI:3052883|PMID:15280420)
RGD
PMID:15280420
MGI:3052883
NCBI chr 1:80,256,973...80,268,198
Ensembl chr 1:80,256,973...80,268,198
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Exo1
exonuclease 1
ISO
MGI:2653925 (MGI:3028407|PMID:14716311)
RGD
PMID:14716311
MGI:3028407
NCBI chr13:93,936,989...93,962,749
Ensembl chr13:93,939,022...93,960,342
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Exosc3
exosome component 3
ISO
(MGI:5009766|PMID:21255825)
RGD
PMID:21255825
MGI:5009766
NCBI chr 5:60,866,498...60,871,734
Ensembl chr 5:60,868,502...60,871,705
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Exosc6
exosome component 6
ISO
(MGI:5009766|PMID:21255825)
RGD
PMID:21255825
MGI:5009766
NCBI chr19:43,190,879...43,193,164
Ensembl chr19:43,191,390...43,192,208
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Lig4
DNA ligase 4
ISO
MGI:1857732 (MGI:3761960|PMID:17713479)
RGD
PMID:17713479
MGI:3761960
NCBI chr16:85,331,771...85,339,496
Ensembl chr16:85,331,866...85,337,769
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Mlh1
mutL homolog 1
involved_in
IEA ISO
GO_REF:0000107 MGI:1857946 (MGI:2662086|PMID:12743174)
Ensembl RGD
PMID:12743174
GO_REF:0000107 MGI:2662086
NCBI chr 8:119,486,655...119,523,716
Ensembl chr 8:119,486,691...119,523,964
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Msh2
mutS homolog 2
involved_in
IEA ISO
GO_REF:0000107 MGI:1857940|MGI:2151801 (MGI:1342394|PMID:10430621), (MGI:2662086|PMID:12743174)
Ensembl RGD
PMID:10430621 PMID:12743174
GO_REF:0000107 MGI:1342394 MGI:2662086
NCBI chr 6:11,215,951...11,274,916
Ensembl chr 6:11,215,963...11,274,932
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Msh6
mutS homolog 6
ISO
MGI:109352|MGI:3653701 (MGI:3641510|PMID:16618598), (MGI:3723381|PMID:17015724)
RGD
PMID:16618598 PMID:17015724
MGI:3641510 MGI:3723381
NCBI chr 6:11,644,565...11,662,389
Ensembl chr 6:11,644,578...11,662,499
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Nbn
nibrin
involved_in
IEA ISS ISO
GO_REF:0000107 GO_REF:0000024 (MGI:3529405|PMID:15668383)
Ensembl UniProt RGD
PMID:15668383
GO_REF:0000024 GO_REF:0000107 MGI:3529405
NCBI chr 5:29,622,347...29,656,877
Ensembl chr 5:29,622,281...29,656,864
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Rnf168
ring finger protein 168
involved_in
ISS ISO
GO_REF:0000024 (MGI:4420833|PMID:20080757)
UniProt RGD
PMID:20080757
GO_REF:0000024 MGI:4420833
NCBI chr11:71,721,242...71,743,421
Ensembl chr11:71,721,250...71,743,421
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Rnf8
ring finger protein 8
involved_in
ISS ISO
GO_REF:0000024 (MGI:4420833|PMID:20080757)
UniProt RGD
PMID:20080757
GO_REF:0000024 MGI:4420833
NCBI chr20:8,285,380...8,309,858
Ensembl chr20:8,285,296...8,309,908
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Swap70
switching B-cell complex subunit SWAP70
ISO
(MGI:1270060|PMID:9642267)
RGD
PMID:9642267
MGI:1270060
NCBI chr 1:174,862,683...174,924,101
Ensembl chr 1:174,862,698...174,924,078
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Ung
uracil-DNA glycosylase
ISO
MGI:1343961 (MGI:3723381|PMID:17015724)
RGD
PMID:17015724
MGI:3723381
NCBI chr12:48,246,593...48,255,547
Ensembl chr12:48,246,569...48,254,822
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Xrcc4
X-ray repair cross complementing 4
ISO
MGI:1926771|MGI:3047571|MGI:3641440 (MGI:3761960|PMID:17713479)
RGD
PMID:17713479
MGI:3761960
NCBI chr 2:18,674,496...18,927,463
Ensembl chr 2:18,677,220...18,927,365
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Ccr6
C-C motif chemokine receptor 6
ISO
(MGI:5787846|PMID:27174992)
RGD
PMID:27174992
MGI:5787846
NCBI chr 1:53,063,380...53,087,519
Ensembl chr 1:53,065,025...53,087,474
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Hspd1
heat shock protein family D (Hsp60) member 1
involved_in
ISO
(PMID:16148103)
RGD
PMID:16148103
NCBI chr 9:61,680,529...61,691,202
Ensembl chr 9:61,680,530...61,690,956
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Parp3
poly (ADP-ribose) polymerase family, member 3
ISO
(MGI:6214451|PMID:26000965)
RGD
PMID:26000965
MGI:6214451
NCBI chr 8:115,173,440...115,179,543
Ensembl chr 8:115,173,453...115,179,191
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Da2-19
uncharacterized LOC302729
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr X:48,196,789...48,213,506
Ensembl chr X:48,196,916...48,213,505
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Thoc1
THO complex 1
ISO
(MGI:5520039|PMID:22144908)
RGD
PMID:22144908
MGI:5520039
NCBI chr18:1,142,540...1,177,084
Ensembl chr18:1,142,782...1,176,974
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Bcl6
BCL6, transcription repressor
ISO
MGI:103034|MGI:2158438 (MGI:1345885|PMID:10490661)
RGD
PMID:10490661
MGI:1345885
NCBI chr11:80,255,790...80,279,075
Ensembl chr11:80,255,790...80,279,075
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Foxp3
forkhead box P3
ISO
MGI:3696705 (MGI:3695768|PMID:16275384)
RGD
PMID:16275384
MGI:3695768
NCBI chr X:15,753,175...15,768,648
Ensembl chr X:15,753,175...15,768,522
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Ndfip1
Nedd4 family interacting protein 1
ISO
MGI:3695433 (MGI:3694584|PMID:17137798)
RGD
PMID:17137798
MGI:3694584
NCBI chr18:31,574,759...31,625,286
Ensembl chr18:31,574,821...31,625,274
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Tnfsf4
TNF superfamily member 4
ISO
(MGI:3763508|PMID:12496423)
RGD
PMID:12496423
MGI:3763508
NCBI chr13:79,269,973...79,293,775
Ensembl chr13:79,269,973...79,293,778
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Exosc3
exosome component 3
ISO
(MGI:5009766|PMID:21255825)
RGD
PMID:21255825
MGI:5009766
NCBI chr 5:60,866,498...60,871,734
Ensembl chr 5:60,868,502...60,871,705
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Exosc6
exosome component 6
ISO
(MGI:5009766|PMID:21255825)
RGD
PMID:21255825
MGI:5009766
NCBI chr19:43,190,879...43,193,164
Ensembl chr19:43,191,390...43,192,208
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Hmces
5-hydroxymethylcytosine binding, ES cell specific
involved_in
ISS ISO
GO_REF:0000024 (MGI:6393148|PMID:31806351)
UniProt RGD
PMID:31806351
GO_REF:0000024 MGI:6393148
NCBI chr 4:119,841,088...119,864,115
Ensembl chr 4:119,815,139...119,864,114
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Kmt5b
lysine methyltransferase 5B
involved_in
ISS ISO
GO_REF:0000024 (MGI:6370097|PMID:28114273)
UniProt RGD
PMID:28114273
GO_REF:0000024 MGI:6370097
NCBI chr 1:219,000,844...219,050,211
Ensembl chr 1:219,000,844...219,050,211
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Kmt5c
lysine methyltransferase 5C
involved_in
ISS ISO
GO_REF:0000024 (MGI:6370097|PMID:28114273)
UniProt RGD
PMID:28114273
GO_REF:0000024 MGI:6370097
NCBI chr 1:72,666,662...72,674,271
Ensembl chr 1:72,666,665...72,674,271
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Mad2l2
mitotic arrest deficient 2 like 2
involved_in
ISO
(PMID:29656893)
RGD
PMID:29656893
NCBI chr 5:164,943,183...164,956,255
Ensembl chr 5:164,950,917...164,956,255
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Paxip1
PAX interacting protein 1
ISO
(MGI:4821506|PMID:20671152)
RGD
PMID:20671152
MGI:4821506
NCBI chr 4:3,956,931...4,008,326
Ensembl chr 4:3,959,640...4,008,326
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Rif1
replication timing regulatory factor 1
ISO
(MGI:5468036|PMID:23306439), (MGI:5476381|PMID:23333305), (MGI:5490831|PMID:23333306)
RGD
PMID:23306439 PMID:23333305 PMID:23333306
MGI:5468036 MGI:5476381 MGI:5490831
NCBI chr 3:37,599,540...37,648,818
Ensembl chr 3:37,599,728...37,647,631
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Shld1
shieldin complex subunit 1
involved_in
ISO IBA
(PMID:29656893) PMID:21873635
RGD
PMID:29656893 , PMID:21873635 , PMID:21873635
RGD:13792537 , RGD:13792537
NCBI chr 3:125,318,682...125,396,705
Ensembl chr 3:125,320,680...125,396,821
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Shld2
shieldin complex subunit 2
involved_in
ISO
(PMID:29656893)
RGD
PMID:29656893
NCBI chr16:10,570,307...10,661,528
Ensembl chr16:10,570,314...10,661,528
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Shld3
shieldin complex subunit 3
involved_in
ISO
(PMID:29656893)
RGD
PMID:29656893
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Tfrc
transferrin receptor
involved_in
ISO ISS
(PMID:26642240) GO_REF:0000024
RGD UniProt
PMID:26642240
GO_REF:0000024
NCBI chr11:71,397,423...71,419,263
Ensembl chr11:71,397,383...71,419,223
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Tp53bp1
tumor protein p53 binding protein 1
involved_in
ISO
(PMID:23345425), (PMID:23760478) (MGI:3041657|PMID:15077110), (MGI:3046005|PMID:15159415)
RGD
PMID:15077110 PMID:15159415 PMID:23345425 PMID:23760478
MGI:3041657 MGI:3046005
NCBI chr 3:113,160,030...113,259,701
Ensembl chr 3:113,160,000...113,231,790
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Mlh1
mutL homolog 1
involved_in
IEA ISO
GO_REF:0000107 (MGI:1342394|PMID:10430621)
Ensembl RGD
PMID:10430621
GO_REF:0000107 MGI:1342394
NCBI chr 8:119,486,655...119,523,716
Ensembl chr 8:119,486,691...119,523,964
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Msh2
mutS homolog 2
involved_in
IEA ISO
GO_REF:0000107 (MGI:1342394|PMID:10430621)
Ensembl RGD
PMID:10430621
GO_REF:0000107 MGI:1342394
NCBI chr 6:11,215,951...11,274,916
Ensembl chr 6:11,215,963...11,274,932
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Nsd2
nuclear receptor binding SET domain protein 2
ISO
(MGI:5462481|PMID:23241889)
RGD
PMID:23241889
MGI:5462481
NCBI chr14:82,119,210...82,196,501
Ensembl chr14:82,119,210...82,171,480
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Pms2
PMS1 homolog 2, mismatch repair system component
ISO
UniProtKB:Q9JK91 (MGI:1342394|PMID:10430621)
RGD
PMID:10430621
MGI:1342394
NCBI chr12:12,714,394...12,738,654
Ensembl chr12:12,714,394...12,738,641
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Tgfb1
transforming growth factor, beta 1
involved_in
ISO ISS
(PMID:14988498) GO_REF:0000024
RGD AgBase
PMID:14988498
GO_REF:0000024
NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
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Tnfsf13
TNF superfamily member 13
involved_in
ISO IBA
(PMID:14988498) PMID:21873635 MGI:3038886 (MGI:3037416|PMID:14988498)
RGD
PMID:14988498 , PMID:21873635 , PMID:21873635
MGI:3037416 , RGD:13792537 , RGD:13792537
NCBI chr10:56,286,964...56,290,680
Ensembl chr10:56,286,887...56,289,952
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Clcf1
cardiotrophin-like cytokine factor 1
ISO
(MGI:3777853|PMID:12023368)
RGD
PMID:12023368
MGI:3777853
NCBI chr 1:219,468,866...219,472,445
Ensembl chr 1:219,468,675...219,472,654
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Il4
interleukin 4
involved_in
ISO IBA
(MGI:3037416|PMID:14988498) PMID:21873635
RGD
PMID:14988498 , PMID:21873635 , PMID:21873635
MGI:3037416 , RGD:13792537 , RGD:13792537
NCBI chr10:38,963,979...38,969,531
Ensembl chr10:38,963,979...38,969,531
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Stat6
signal transducer and activator of transcription 6
ISO
MGI:107187 (MGI:1345885|PMID:10490661)
RGD
PMID:10490661
MGI:1345885
NCBI chr 7:70,946,228...70,963,542
Ensembl chr 7:70,946,228...70,964,484
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Atad5
ATPase family, AAA domain containing 5
ISO
MGI:4127920 (MGI:5763555|PMID:25404367)
RGD
PMID:25404367
MGI:5763555
NCBI chr10:67,427,042...67,475,825
Ensembl chr10:67,427,066...67,473,649
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Cd28
Cd28 molecule
IEA ISO
GO_REF:0000107 MGI:1857150 (MGI:62368|PMID:7688139)
Ensembl RGD
PMID:7688139
GO_REF:0000107 MGI:62368
NCBI chr 9:67,546,408...67,573,858
Ensembl chr 9:67,546,408...67,571,871
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Cd40
CD40 molecule
involved_in
ISO IBA
(MGI:2670820|PMID:12882831) PMID:21873635
RGD
PMID:12882831 , PMID:21873635 , PMID:21873635
MGI:2670820 , RGD:13792537 , RGD:13792537
NCBI chr 3:161,519,789...161,534,943
Ensembl chr 3:161,519,743...161,534,704
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Ifng
interferon gamma
ISO
(MGI:2670820|PMID:12882831)
RGD
PMID:12882831
MGI:2670820
NCBI chr 7:61,337,383...61,341,419
Ensembl chr 7:61,337,381...61,341,419
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Il2
interleukin 2
ISO
MGI:1857191 (MGI:87443|PMID:1830926)
RGD
PMID:1830926
MGI:87443
NCBI chr 2:123,847,150...123,851,854
Ensembl chr 2:123,847,150...123,851,854
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Il4
interleukin 4
involved_in
ISO IBA
(MGI:2670820|PMID:12882831), (MGI:3037416|PMID:14988498) PMID:21873635
RGD
PMID:12882831 PMID:14988498 , PMID:21873635 , PMID:21873635
MGI:2670820 MGI:3037416 , RGD:13792537 , RGD:13792537
NCBI chr10:38,963,979...38,969,531
Ensembl chr10:38,963,979...38,969,531
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Mlh1
mutL homolog 1
involved_in
IEA ISO
GO_REF:0000107 (MGI:1342394|PMID:10430621)
Ensembl RGD
PMID:10430621
GO_REF:0000107 MGI:1342394
NCBI chr 8:119,486,655...119,523,716
Ensembl chr 8:119,486,691...119,523,964
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Msh2
mutS homolog 2
involved_in
IEA ISO
GO_REF:0000107 (MGI:1342394|PMID:10430621)
Ensembl RGD
PMID:10430621
GO_REF:0000107 MGI:1342394
NCBI chr 6:11,215,951...11,274,916
Ensembl chr 6:11,215,963...11,274,932
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Pagr1
Paxip1-associated glutamate-rich protein 1
ISO
(MGI:5752090|PMID:26744420)
RGD
PMID:26744420
MGI:5752090
NCBI chr 1:198,448,790...198,451,078
Ensembl chr 1:198,449,040...198,450,688
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Paxip1
PAX interacting protein 1
ISO
(MGI:5752090|PMID:26744420)
RGD
PMID:26744420
MGI:5752090
NCBI chr 4:3,956,931...4,008,326
Ensembl chr 4:3,959,640...4,008,326
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Pms2
PMS1 homolog 2, mismatch repair system component
ISO
UniProtKB:Q9JK91 (MGI:1342394|PMID:10430621)
RGD
PMID:10430621
MGI:1342394
NCBI chr12:12,714,394...12,738,654
Ensembl chr12:12,714,394...12,738,641
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Ptprc
protein tyrosine phosphatase, receptor type, C
ISO
MGI:2181288 (MGI:85031|PMID:9015183)
RGD
PMID:9015183
MGI:85031
NCBI chr13:55,061,561...55,174,150
Ensembl chr13:55,061,562...55,173,692
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Tbx21
T-box transcription factor 21
ISO
MGI:2180194 (MGI:2670820|PMID:12882831)
RGD
PMID:12882831
MGI:2670820
NCBI chr10:85,032,799...85,049,331
Ensembl chr10:85,032,799...85,049,331
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Aplf
aprataxin and PNKP like factor
ISO
MGI:4128102 (MGI:4887518|PMID:21211721)
RGD
PMID:21211721
MGI:4887518
NCBI chr 4:119,514,822...119,568,764
Ensembl chr 4:119,514,840...119,568,736
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Mir181b1
microRNA 181b-1
ISO
(MGI:3817382|PMID:18762567)
RGD
PMID:18762567
MGI:3817382
NCBI chr13:54,952,903...54,953,012
Ensembl chr13:54,952,903...54,953,012
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Mir181b2
microRNA 181b-2
ISO
(MGI:3817382|PMID:18762567)
RGD
PMID:18762567
MGI:3817382
NCBI chr 3:23,151,455...23,151,542
Ensembl chr 3:23,151,455...23,151,542
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Supt6h
SPT6 homolog, histone chaperone and transcription elongation factor
ISO
(MGI:5004983|PMID:21518874)
RGD
PMID:21518874
MGI:5004983
NCBI chr10:65,470,470...65,507,581
Ensembl chr10:65,470,471...65,507,581
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Foxp3
forkhead box P3
ISO
MGI:3696705 (MGI:3695768|PMID:16275384)
RGD
PMID:16275384
MGI:3695768
NCBI chr X:15,753,175...15,768,648
Ensembl chr X:15,753,175...15,768,522
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Il27ra
interleukin 27 receptor subunit alpha
ISO
MGI:3525439 (MGI:1926579|PMID:11057672)
RGD
PMID:11057672
MGI:1926579
NCBI chr19:25,151,835...25,163,995
Ensembl chr19:25,149,897...25,164,086
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Ndfip1
Nedd4 family interacting protein 1
ISO
MGI:3695433 (MGI:3694584|PMID:17137798)
RGD
PMID:17137798
MGI:3694584
NCBI chr18:31,574,759...31,625,286
Ensembl chr18:31,574,821...31,625,274
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Slc15a4
solute carrier family 15 member 4
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (MGI:5649169|PMID:25310967)
UniProt Ensembl RGD
PMID:25310967
GO_REF:0000024 GO_REF:0000107 MGI:5649169
NCBI chr12:32,753,824...32,773,277
Ensembl chr12:32,753,824...32,773,277
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Adar
adenosine deaminase, RNA-specific
involved_in
IEA ISO
GO_REF:0000107 (MGI:5469797|PMID:23209284)
Ensembl RGD
PMID:23209284
GO_REF:0000107 MGI:5469797
NCBI chr 2:189,045,551...189,085,448
Ensembl chr 2:189,062,443...189,083,236
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Aicda
activation-induced cytidine deaminase
involved_in
ISO
(PMID:18722174)
RGD
PMID:18722174
NCBI chr 4:155,359,909...155,371,104
Ensembl chr 4:155,359,921...155,369,671
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Ctnnbl1
catenin, beta like 1
involved_in
ISO
(PMID:18722174)
RGD
PMID:18722174
NCBI chr 3:154,212,245...154,373,170
Ensembl chr 3:154,212,202...154,373,169
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Polb
DNA polymerase beta
ISO
MGI:5427084 (MGI:5553198|PMID:24388753)
RGD
PMID:24388753
MGI:5553198
NCBI chr16:74,237,001...74,260,272
Ensembl chr16:74,237,001...74,260,271
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Aicda
activation-induced cytidine deaminase
involved_in
ISO
(PMID:21518874)
RGD
PMID:21518874
NCBI chr 4:155,359,909...155,371,104
Ensembl chr 4:155,359,921...155,369,671
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Exo1
exonuclease 1
ISO
MGI:2653925 (MGI:3028407|PMID:14716311)
RGD
PMID:14716311
MGI:3028407
NCBI chr13:93,936,989...93,962,749
Ensembl chr13:93,939,022...93,960,342
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Mcm3ap
minichromosome maintenance complex component 3 associated protein
involved_in
ISO
(PMID:23652018)
RGD
PMID:23652018
NCBI chr20:12,879,304...12,917,069
Ensembl chr20:12,879,278...12,917,039
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Mlh1
mutL homolog 1
involved_in
IEA IBA ISO
GO_REF:0000107 PMID:21873635 MGI:1857946 (MGI:1332749|PMID:10092760), (MGI:3691360|PMID:10429667)
Ensembl RGD
PMID:10092760 PMID:10429667 , PMID:21873635 , PMID:21873635
GO_REF:0000107 MGI:1332749 MGI:3691360 , RGD:13792537 , RGD:13792537
NCBI chr 8:119,486,655...119,523,716
Ensembl chr 8:119,486,691...119,523,964
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Msh2
mutS homolog 2
involved_in NOT
IEA ISO
GO_REF:0000107 MGI:109352|MGI:1857940|MGI:1858055|MGI:2680817 (MGI:1275866|PMID:9697842), (MGI:1275867|PMID:9697843), (MGI:2679186|PMID:14568978), (MGI:3513244|PMID:15494304), (MGI:3641481|PMID:9607916) MGI:1858055 (MGI:1261398|PMID:9607915)
Ensembl RGD
PMID:9607915 PMID:9607916 PMID:9697842 PMID:9697843 PMID:14568978 PMID:15494304
GO_REF:0000107 MGI:1261398 MGI:1275866 MGI:1275867 MGI:2679186 MGI:3513244 MGI:3641481
NCBI chr 6:11,215,951...11,274,916
Ensembl chr 6:11,215,963...11,274,932
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Msh3
mutS homolog 3
NOT
ISO
MGI:1858056 (MGI:1353126|PMID:10662804)
RGD
PMID:10662804
MGI:1353126
NCBI chr 2:21,790,048...21,931,791
Ensembl chr 2:21,790,044...21,931,720
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Msh6
mutS homolog 6
involved_in
ISO IBA
MGI:1858014|MGI:3653701 (MGI:1353126|PMID:10662804), (MGI:3046392|PMID:15238604), (MGI:3641510|PMID:16618598), (MGI:3723381|PMID:17015724) PMID:21873635
RGD
PMID:10662804 PMID:15238604 PMID:16618598 PMID:17015724 , PMID:21873635 , PMID:21873635
MGI:1353126 MGI:3046392 MGI:3641510 MGI:3723381 , RGD:13792537 , RGD:13792537
NCBI chr 6:11,644,565...11,662,389
Ensembl chr 6:11,644,578...11,662,499
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Nuggc
nuclear GTPase, germinal center associated
ISO
MGI:5449552 (MGI:5448793|PMID:22833677)
RGD
PMID:22833677
MGI:5448793
NCBI chr15:49,011,951...49,055,246
Ensembl chr15:49,010,492...49,055,237
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Pms2
PMS1 homolog 2, mismatch repair system component
involved_in
ISO IBA
MGI:1857947 (MGI:1261707|PMID:9618520), (MGI:3691360|PMID:10429667) PMID:21873635
RGD
PMID:9618520 PMID:10429667 , PMID:21873635 , PMID:21873635
MGI:1261707 MGI:3691360 , RGD:13792537 , RGD:13792537
NCBI chr12:12,714,394...12,738,654
Ensembl chr12:12,714,394...12,738,641
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Polb
DNA polymerase beta
ISO
MGI:5427084 (MGI:5553198|PMID:24388753)
RGD
PMID:24388753
MGI:5553198
NCBI chr16:74,237,001...74,260,272
Ensembl chr16:74,237,001...74,260,271
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Polm
DNA polymerase mu
ISO
MGI:2179233 (MGI:3576407|PMID:15789338)
RGD
PMID:15789338
MGI:3576407
NCBI chr14:86,069,378...86,079,327
Ensembl chr14:86,069,016...86,078,954
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Polq
DNA polymerase theta
ISO
(MGI:3603978|PMID:16172387), (MGI:3609287|PMID:16222339), (MGI:3692678|PMID:16890500)
RGD
PMID:16172387 PMID:16222339 PMID:16890500
MGI:3603978 MGI:3609287 MGI:3692678
NCBI chr11:66,585,860...66,695,369
Ensembl chr11:66,585,881...66,695,353
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Samhd1
SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1
ISO
(MGI:6157199|PMID:29669924)
RGD
PMID:29669924
MGI:6157199
NCBI chr 3:153,210,829...153,250,705
Ensembl chr 3:153,210,829...153,250,641
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Ung
uracil-DNA glycosylase
ISO
MGI:101816|MGI:2182610 (MGI:3513244|PMID:15494304), (MGI:3723381|PMID:17015724)
RGD
PMID:15494304 PMID:17015724
MGI:3513244 MGI:3723381
NCBI chr12:48,246,593...48,255,547
Ensembl chr12:48,246,569...48,254,822
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Mlh1
mutL homolog 1
ISO
MGI:1857946 (MGI:3722579|PMID:11828012)
RGD
PMID:11828012
MGI:3722579
NCBI chr 8:119,486,655...119,523,716
Ensembl chr 8:119,486,691...119,523,964
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Msh2
mutS homolog 2
ISO
MGI:109352|MGI:1857940|MGI:2151801|MGI:2680817 (MGI:2679186|PMID:14568978), (MGI:3513244|PMID:15494304), (MGI:3581477|PMID:15955838), (MGI:3582380|PMID:14563316), (MGI:3722579|PMID:11828012)
RGD
PMID:11828012 PMID:14563316 PMID:14568978 PMID:15494304 PMID:15955838
MGI:2679186 MGI:3513244 MGI:3581477 MGI:3582380 MGI:3722579
NCBI chr 6:11,215,951...11,274,916
Ensembl chr 6:11,215,963...11,274,932
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Msh3
mutS homolog 3
involved_in
ISO IBA
MGI:1858056 (MGI:3046392|PMID:15238604) PMID:21873635
RGD
PMID:15238604 , PMID:21873635 , PMID:21873635
MGI:3046392 , RGD:13792537 , RGD:13792537
NCBI chr 2:21,790,048...21,931,791
Ensembl chr 2:21,790,044...21,931,720
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Msh6
mutS homolog 6
involved_in
ISO IBA
MGI:1858014 (MGI:3046392|PMID:15238604) PMID:21873635
RGD
PMID:15238604 , PMID:21873635 , PMID:21873635
MGI:3046392 , RGD:13792537 , RGD:13792537
NCBI chr 6:11,644,565...11,662,389
Ensembl chr 6:11,644,578...11,662,499
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Pms2
PMS1 homolog 2, mismatch repair system component
ISO
MGI:1857947 (MGI:3722579|PMID:11828012)
RGD
PMID:11828012
MGI:3722579
NCBI chr12:12,714,394...12,738,654
Ensembl chr12:12,714,394...12,738,641
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Ung
uracil-DNA glycosylase
ISO
MGI:101816|MGI:2182610 (MGI:3513244|PMID:15494304)
RGD
PMID:15494304
MGI:3513244
NCBI chr12:48,246,593...48,255,547
Ensembl chr12:48,246,569...48,254,822
G
Mlh1
mutL homolog 1
ISO
MGI:101816 (MGI:2662086|PMID:12743174)
RGD
PMID:12743174
MGI:2662086
NCBI chr 8:119,486,655...119,523,716
Ensembl chr 8:119,486,691...119,523,964
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Msh2
mutS homolog 2
involved_in
ISO IBA
MGI:101938 (MGI:2662086|PMID:12743174) PMID:21873635
RGD
PMID:12743174 , PMID:21873635 , PMID:21873635
MGI:2662086 , RGD:13792537 , RGD:13792537
NCBI chr 6:11,215,951...11,274,916
Ensembl chr 6:11,215,963...11,274,932
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Bcl11b
BAF chromatin remodeling complex subunit BCL11B
ISO
MGI:2663971 (MGI:2662810|PMID:12717433)
RGD
PMID:12717433
MGI:2662810
NCBI chr 6:131,834,097...131,927,251
Ensembl chr 6:131,834,097...131,926,272
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Lef1
lymphoid enhancer binding factor 1
involved_in
IEA ISO
GO_REF:0000107 MGI:98507 (MGI:3640275|PMID:9462507)
Ensembl RGD
PMID:9462507
GO_REF:0000107 MGI:3640275
NCBI chr 2:236,232,115...236,345,061
Ensembl chr 2:236,233,239...236,345,056
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Lig4
DNA ligase 4
ISO
MGI:1857732 (MGI:1860400|PMID:10911993)
RGD
PMID:10911993
MGI:1860400
NCBI chr16:85,331,771...85,339,496
Ensembl chr16:85,331,866...85,337,769
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Prkdc
protein kinase, DNA-activated, catalytic subunit
ISO
MGI:2383951 (MGI:1290043|PMID:9768755)
RGD
PMID:9768755
MGI:1290043
NCBI chr11:89,293,547...89,510,948
Ensembl chr11:89,293,696...89,510,871
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Tcf7
transcription factor 7
ISO
MGI:96770 (MGI:3640275|PMID:9462507)
RGD
PMID:9462507
MGI:3640275
NCBI chr10:37,616,033...37,646,027
Ensembl chr10:37,617,279...37,645,802
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Atm
ATM serine/threonine kinase
ISO
MGI:104779 (MGI:5543316|PMID:23836881)
RGD
PMID:23836881
MGI:5543316
NCBI chr 8:58,015,938...58,119,973
Ensembl chr 8:58,015,940...58,120,045
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Dcaf1
DDB1 and CUL4 associated factor 1
ISO
(MGI:5314150|PMID:22157821)
RGD
PMID:22157821
MGI:5314150
NCBI chr 8:115,538,365...115,615,282
Ensembl chr 8:115,546,712...115,615,282
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Dclre1c
DNA cross-link repair 1C
ISO
(MGI:5543316|PMID:23836881)
RGD
PMID:23836881
MGI:5543316
NCBI chr17:78,782,512...78,812,140
Ensembl chr17:78,783,437...78,812,111
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Hmgb1
high mobility group box 1
involved_in
ISO
(PMID:9166431)
RGD
PMID:9166431
NCBI chr12:7,082,529...7,090,246
Ensembl chr16:37,500,017...37,502,237
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Lig1
DNA ligase 1
NOT NOT|involved_in
ISO
(PMID:9809069)
RGD
PMID:9809069
NCBI chr 1:75,356,212...75,394,757
Ensembl chr 1:75,356,220...75,394,758
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Lig3
DNA ligase 3
NOT NOT|involved_in
ISO
(PMID:9809069)
RGD
PMID:9809069
NCBI chr10:70,134,734...70,158,051
Ensembl chr10:70,134,729...70,158,055
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Lig4
DNA ligase 4
involved_in
ISO
(PMID:9809069) MGI:1857732 (MGI:3052572|PMID:15194694), (MGI:3641390|PMID:10716994)
RGD
PMID:9809069 PMID:10716994 PMID:15194694
MGI:3052572 MGI:3641390
NCBI chr16:85,331,771...85,339,496
Ensembl chr16:85,331,866...85,337,769
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Prkdc
protein kinase, DNA-activated, catalytic subunit
ISO
MGI:107202 (MGI:5543316|PMID:23836881)
RGD
PMID:23836881
MGI:5543316
NCBI chr11:89,293,547...89,510,948
Ensembl chr11:89,293,696...89,510,871
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Rag1
recombination activating 1
involved_in
ISO IBA
(PMID:14670978) PMID:21873635 MGI:97849 (MGI:4441018|PMID:20122409), (MGI:4441148|PMID:10601033), (MGI:50458|PMID:1547488), (MGI:59028|PMID:2360047), (MGI:64624|PMID:8284210)
RGD
PMID:1547488 PMID:2360047 PMID:8284210 PMID:10601033 PMID:14670978 PMID:20122409 , PMID:21873635 , PMID:21873635
MGI:4441018 MGI:4441148 MGI:50458 MGI:59028 MGI:64624 , RGD:13792537 , RGD:13792537
NCBI chr 3:91,206,394...91,217,491
Ensembl chr 3:91,206,394...91,217,491
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Rag2
recombination activating 2
involved_in
ISO IBA
MGI:97848 (MGI:4441252|PMID:18033247), (MGI:50458|PMID:1547488), (MGI:59028|PMID:2360047) PMID:21873635
RGD
PMID:1547488 PMID:2360047 PMID:18033247 , PMID:21873635 , PMID:21873635
MGI:4441252 MGI:50458 MGI:59028 , RGD:13792537 , RGD:13792537
NCBI chr 3:91,191,837...91,200,134
Ensembl chr 3:91,191,837...91,200,134
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Xrcc4
X-ray repair cross complementing 4
ISO
MGI:1926771 (MGI:3641390|PMID:10716994)
RGD
PMID:10716994
MGI:3641390
NCBI chr 2:18,674,496...18,927,463
Ensembl chr 2:18,677,220...18,927,365
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Xrcc6
X-ray repair cross complementing 6
ISO
MGI:2179954 (MGI:3641390|PMID:10716994)
RGD
PMID:10716994
MGI:3641390
NCBI chr 7:123,259,881...123,280,613
Ensembl chr 7:123,259,761...123,280,612
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