|
G
|
Polb
|
DNA polymerase beta
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:5427084 (PMID:24388753) GO_REF:0000107
|
RGD Ensembl |
PMID:24388753 |
GO_REF:0000107 |
NCBI chr16:69,379,438...69,402,710
Ensembl chr16:69,379,400...69,404,812
|
|
G
|
Yy1
|
YY1 transcription factor
|
involved_in
|
ISO IEA
|
MGI:3624790 (PMID:23531880) GO_REF:0000107
|
RGD Ensembl |
PMID:23531880 |
GO_REF:0000107 |
NCBI chr 6:133,471,615...133,500,875
Ensembl chr 6:127,707,596...127,732,747
|
|
|
G
|
Cyren
|
cell cycle regulator of NHEJ
|
involved_in
|
ISS ISO
|
GO_REF:0000024 (PMID:30017584), (PMID:31795137)
|
UniProt RGD |
PMID:30017584 PMID:31795137 |
GO_REF:0000024 |
NCBI chr 4:63,547,311...63,553,394
Ensembl chr 4:63,547,335...63,551,602
|
|
G
|
Foxp1
|
forkhead box P1
|
acts_upstream_of_or_within
|
ISO
|
MGI:3711150 (PMID:16819554)
|
RGD |
PMID:16819554 |
|
NCBI chr 4:133,117,346...133,808,647
Ensembl chr 4:131,564,756...132,112,258
|
|
G
|
Lig4
|
DNA ligase 4
|
involved_in acts_upstream_of_or_within
|
IBA ISO
|
GO_REF:0000033 MGI:1857732 (PMID:9823897)
|
GO_Central RGD |
PMID:9823897 |
GO_REF:0000033 |
NCBI chr16:86,220,345...86,228,930
Ensembl chr16:79,518,312...79,527,040
|
|
G
|
Nhej1
|
nonhomologous end-joining factor 1
|
involved_in
|
ISO IEA ISS
|
(PMID:20558749) GO_REF:0000107 GO_REF:0000024
|
RGD Ensembl UniProt |
PMID:20558749 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr 9:83,974,995...84,071,161
Ensembl chr 9:76,526,324...76,622,444
|
|
G
|
Prkdc
|
protein kinase, DNA-activated, catalytic subunit
|
involved_in acts_upstream_of_or_within
|
IBA IEA ISO
|
GO_REF:0000033 GO_REF:0000107 MGI:2383951 (PMID:9768755)
|
GO_Central Ensembl RGD |
PMID:9768755 |
GO_REF:0000033 GO_REF:0000107 |
NCBI chr11:98,544,952...98,762,499
Ensembl chr11:85,040,792...85,257,952
|
|
G
|
Tcf3
|
transcription factor 3
|
acts_upstream_of_or_within involved_in
|
ISO IEA IBA
|
(PMID:16428437) GO_REF:0000107 MGI:2178112 (PMID:16428437) GO_REF:0000033
|
RGD Ensembl GO_Central |
PMID:16428437 |
GO_REF:0000033 GO_REF:0000107 |
NCBI chr 7:9,931,251...9,952,994
Ensembl chr 7:9,280,571...9,302,314
|
|
G
|
Xrcc4
|
X-ray repair cross complementing 4
|
involved_in acts_upstream_of_or_within
|
IBA ISO
|
GO_REF:0000033 MGI:1926771 (PMID:9875844)
|
GO_Central RGD |
PMID:9875844 |
GO_REF:0000033 |
NCBI chr 2:22,686,506...22,932,929
Ensembl chr 2:20,951,200...21,197,808
|
|
|
G
|
Aicda
|
activation-induced cytidine deaminase
|
acts_upstream_of_or_within involved_in
|
ISO
|
(PMID:17713479) (PMID:21518874)
|
RGD |
PMID:17713479 PMID:21518874 |
|
NCBI chr 4:157,446,120...157,455,958
Ensembl chr 4:155,774,132...155,783,972
|
|
G
|
Atad5
|
ATPase family, AAA domain containing 5
|
acts_upstream_of
|
ISO IEA
|
MGI:4127920 (PMID:25404367) GO_REF:0000107
|
RGD Ensembl |
PMID:25404367 |
GO_REF:0000107 |
NCBI chr10:65,568,569...65,616,379
Ensembl chr10:65,070,689...65,117,845
|
|
G
|
Batf
|
basic leucine zipper ATF-like transcription factor
|
involved_in
|
ISS IEA ISO
|
GO_REF:0000024 GO_REF:0000107 (PMID:20421391), (PMID:21572431)
|
UniProt Ensembl RGD |
PMID:20421391 PMID:21572431 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr 6:111,084,717...111,107,052
Ensembl chr 6:105,353,715...105,376,051
|
|
G
|
Cd40lg
|
CD40 ligand
|
involved_in
|
IEA ISO
|
GO_REF:0000107 (PMID:7529792)
|
Ensembl RGD |
PMID:7529792 |
GO_REF:0000107 |
NCBI chr X:140,164,341...140,176,057
Ensembl chr X:135,126,969...135,138,306
|
|
G
|
Ercc1
|
ERCC excision repair 1, endonuclease non-catalytic subunit
|
acts_upstream_of_or_within
|
ISO
|
MGI:2183944 (PMID:15280420)
|
RGD |
PMID:15280420 |
|
NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
|
|
G
|
Exo1
|
exonuclease 1
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:2653925 (PMID:14716311) GO_REF:0000107
|
RGD Ensembl |
PMID:14716311 |
GO_REF:0000107 |
NCBI chr13:87,809,725...87,834,654
Ensembl chr13:87,809,810...87,834,654
|
|
G
|
Exosc3
|
exosome component 3
|
involved_in
|
ISO IEA
|
(PMID:21255825) GO_REF:0000107
|
RGD Ensembl |
PMID:21255825 |
GO_REF:0000107 |
NCBI chr 5:64,369,495...64,374,711
Ensembl chr 5:59,573,886...59,579,060
|
|
G
|
Exosc6
|
exosome component 6
|
involved_in
|
ISO IEA
|
(PMID:21255825) GO_REF:0000107
|
RGD Ensembl |
PMID:21255825 |
GO_REF:0000107 |
NCBI chr19:39,022,171...39,023,585
Ensembl chr19:39,022,183...39,023,515
|
|
G
|
Lig4
|
DNA ligase 4
|
acts_upstream_of_or_within
|
ISO
|
MGI:1857732 (PMID:17713479)
|
RGD |
PMID:17713479 |
|
NCBI chr16:86,220,345...86,228,930
Ensembl chr16:79,518,312...79,527,040
|
|
G
|
Mlh1
|
mutL homolog 1
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:1857946 (PMID:12743174) GO_REF:0000107
|
RGD Ensembl |
PMID:12743174 |
GO_REF:0000107 |
NCBI chr 8:120,074,871...120,112,109
Ensembl chr 8:111,196,468...111,233,617
|
|
G
|
Msh2
|
mutS homolog 2
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:1857940|MGI:2151801 (PMID:10430621), (PMID:12743174) GO_REF:0000107
|
RGD Ensembl |
PMID:10430621 PMID:12743174 |
GO_REF:0000107 |
NCBI chr 6:12,567,368...12,626,534
Ensembl chr 6:6,813,795...6,872,938
|
|
G
|
Msh6
|
mutS homolog 6
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:109352|MGI:3653701 (PMID:16618598), (PMID:17015724) GO_REF:0000107
|
RGD Ensembl |
PMID:16618598 PMID:17015724 |
GO_REF:0000107 |
NCBI chr 6:12,316,190...12,333,505
Ensembl chr 6:6,562,632...6,579,956
|
|
G
|
Nbn
|
nibrin
|
involved_in
|
ISS ISO IEA
|
GO_REF:0000024 (PMID:15668383) GO_REF:0000107
|
UniProt RGD Ensembl |
PMID:15668383 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr 5:29,459,574...29,494,152
Ensembl chr 5:29,459,457...29,494,150
|
|
G
|
Nfkbiz
|
NFKB inhibitor zeta
|
involved_in
|
ISO
|
MGI:3046930|MGI:5501251 (PMID:25124037), (PMID:31182790)
|
RGD |
PMID:25124037 PMID:31182790 |
|
NCBI chr11:58,251,720...58,279,767
Ensembl chr11:44,782,676...44,810,723
|
|
G
|
Pcyt1a
|
phosphate cytidylyltransferase 1A, choline
|
involved_in
|
ISS IEA ISO
|
GO_REF:0000024 GO_REF:0000107 (PMID:19139091)
|
UniProt Ensembl RGD |
PMID:19139091 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr11:81,818,914...81,862,623
Ensembl chr11:68,313,882...68,357,357
|
|
G
|
Rnf168
|
ring finger protein 168
|
involved_in
|
ISS ISO
|
GO_REF:0000024 (PMID:20080757)
|
UniProt RGD |
PMID:20080757 |
GO_REF:0000024 |
NCBI chr11:68,486,313...68,508,296
Ensembl chr11:68,486,321...68,508,277
|
|
G
|
Rnf8
|
ring finger protein 8
|
involved_in
|
ISS ISO
|
GO_REF:0000024 (PMID:20080757)
|
UniProt RGD |
PMID:20080757 |
GO_REF:0000024 |
NCBI chr20:7,682,258...7,710,448
Ensembl chr20:7,682,322...7,708,491
|
|
G
|
Sanbr
|
SANT and BTB domain regulator of CSR
|
involved_in
|
ISS IBA ISO IEA
|
GO_REF:0000024 GO_REF:0000033 (PMID:33831416) GO_REF:0000107
|
UniProt GO_Central RGD Ensembl |
PMID:33831416 |
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 |
NCBI chr14:97,516,652...97,585,955
Ensembl chr14:97,516,413...97,581,346
|
|
G
|
Swap70
|
switching B-cell complex subunit SWAP70
|
acts_upstream_of_or_within
|
ISO IEA
|
(PMID:9642267) GO_REF:0000107
|
RGD Ensembl |
PMID:9642267 |
GO_REF:0000107 |
NCBI chr 1:164,267,588...164,328,796
Ensembl chr 1:164,267,609...164,328,794
|
|
G
|
Ung
|
uracil-DNA glycosylase
|
acts_upstream_of_or_within
|
ISO
|
MGI:1343961 (PMID:17015724)
|
RGD |
PMID:17015724 |
|
NCBI chr12:48,145,838...48,154,789
Ensembl chr12:42,485,276...42,494,206
|
|
G
|
Xrcc4
|
X-ray repair cross complementing 4
|
acts_upstream_of_or_within
|
ISO
|
MGI:1926771|MGI:3047571|MGI:3641440 (PMID:17713479)
|
RGD |
PMID:17713479 |
|
NCBI chr 2:22,686,506...22,932,929
Ensembl chr 2:20,951,200...21,197,808
|
|
|
G
|
Ccr6
|
C-C motif chemokine receptor 6
|
involved_in
|
ISO IEA
|
(PMID:27174992) GO_REF:0000107
|
RGD Ensembl |
PMID:27174992 |
GO_REF:0000107 |
NCBI chr 1:55,022,037...55,055,857
Ensembl chr 1:52,474,168...52,498,603
|
|
|
G
|
Fdcsp
|
follicular dendritic cell secreted protein
|
acts_upstream_of_positive_effect
|
ISO
|
MGI:7719862 (PMID:17548624)
|
RGD |
PMID:17548624 |
|
NCBI chr14:20,169,691...20,173,983
Ensembl chr14:20,169,691...20,173,983
|
|
|
G
|
Bcl6
|
BCL6, transcription repressor
|
acts_upstream_of
|
ISO IEA
|
MGI:103034|MGI:2158438 (PMID:10490661) GO_REF:0000107
|
RGD Ensembl |
PMID:10490661 |
GO_REF:0000107 |
NCBI chr11:90,358,753...90,382,049
Ensembl chr11:76,854,090...76,877,389
|
|
G
|
Fdcsp
|
follicular dendritic cell secreted protein
|
acts_upstream_of_or_within_negative_effect
|
ISO
|
MGI:7719862 (PMID:17548624)
|
RGD |
PMID:17548624 |
|
NCBI chr14:20,169,691...20,173,983
Ensembl chr14:20,169,691...20,173,983
|
|
G
|
Foxp3
|
forkhead box P3
|
acts_upstream_of
|
ISO IEA
|
MGI:3696705 (PMID:16275384) GO_REF:0000107
|
RGD Ensembl |
PMID:16275384 |
GO_REF:0000107 |
NCBI chr X:17,580,380...17,601,181
Ensembl chr X:14,908,494...14,923,838
|
|
G
|
Il4
|
interleukin 4
|
acts_upstream_of
|
ISO
|
(PMID:14988498)
|
RGD |
PMID:14988498 |
|
NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750
|
|
G
|
Stat6
|
signal transducer and activator of transcription 6
|
acts_upstream_of
|
ISO
|
MGI:107187 (PMID:10490661)
|
RGD |
PMID:10490661 |
|
NCBI chr 7:65,365,505...65,382,825
Ensembl chr 7:63,479,642...63,498,495
|
|
|
G
|
Fdcsp
|
follicular dendritic cell secreted protein
|
acts_upstream_of_or_within_negative_effect
|
ISO
|
MGI:7719862 (PMID:17548624)
|
RGD |
PMID:17548624 |
|
NCBI chr14:20,169,691...20,173,983
Ensembl chr14:20,169,691...20,173,983
|
|
G
|
Hspd1
|
heat shock protein family D (Hsp60) member 1
|
involved_in
|
ISO
|
(PMID:16148103)
|
RGD |
PMID:16148103 |
|
NCBI chr 9:64,073,610...64,084,332
Ensembl chr 9:56,579,201...56,589,662
|
|
G
|
Il4
|
interleukin 4
|
acts_upstream_of
|
ISO
|
(PMID:14988498)
|
RGD |
PMID:14988498 |
|
NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750
|
|
|
G
|
Parp3
|
poly (ADP-ribose) polymerase family, member 3
|
involved_in
|
ISO IEA
|
(PMID:26000965) GO_REF:0000107
|
RGD Ensembl |
PMID:26000965 |
GO_REF:0000107 |
NCBI chr 8:107,111,010...107,117,073
Ensembl chr 8:107,111,012...107,116,782
|
|
|
G
|
Fdcsp
|
follicular dendritic cell secreted protein
|
involved_in
|
ISO
|
MGI:6723808|MGI:7719862 (PMID:24399151)
|
RGD |
PMID:24399151 |
|
NCBI chr14:20,169,691...20,173,983
Ensembl chr14:20,169,691...20,173,983
|
|
|
G
|
Bcl6
|
BCL6, transcription repressor
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:103034|MGI:2158438 (PMID:10490661) GO_REF:0000107
|
RGD Ensembl |
PMID:10490661 |
GO_REF:0000107 |
NCBI chr11:90,358,753...90,382,049
Ensembl chr11:76,854,090...76,877,389
|
|
G
|
Foxp3
|
forkhead box P3
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:3696705 (PMID:16275384) GO_REF:0000107
|
RGD Ensembl |
PMID:16275384 |
GO_REF:0000107 |
NCBI chr X:17,580,380...17,601,181
Ensembl chr X:14,908,494...14,923,838
|
|
G
|
Ndfip1
|
Nedd4 family interacting protein 1
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:3695433 (PMID:17137798) GO_REF:0000107
|
RGD Ensembl |
PMID:17137798 |
GO_REF:0000107 |
NCBI chr18:30,516,931...30,567,199
Ensembl chr18:30,250,613...30,322,311
|
|
|
G
|
Tnfsf4
|
TNF superfamily member 4
|
involved_in
|
ISO IEA
|
(PMID:12496423) GO_REF:0000107
|
RGD Ensembl |
PMID:12496423 |
GO_REF:0000107 |
NCBI chr13:76,256,654...76,280,133
Ensembl chr13:73,723,329...73,746,788
|
|
|
G
|
Exosc3
|
exosome component 3
|
acts_upstream_of_or_within
|
ISO IEA
|
(PMID:21255825) GO_REF:0000107
|
RGD Ensembl |
PMID:21255825 |
GO_REF:0000107 |
NCBI chr 5:64,369,495...64,374,711
Ensembl chr 5:59,573,886...59,579,060
|
|
G
|
Exosc6
|
exosome component 6
|
acts_upstream_of_or_within
|
ISO IEA
|
(PMID:21255825) GO_REF:0000107
|
RGD Ensembl |
PMID:21255825 |
GO_REF:0000107 |
NCBI chr19:39,022,171...39,023,585
Ensembl chr19:39,022,183...39,023,515
|
|
G
|
Hmces
|
5-hydroxymethylcytosine binding, ES cell specific
|
involved_in
|
ISS IEA ISO
|
GO_REF:0000024 GO_REF:0000107 (PMID:31806351)
|
UniProt Ensembl RGD |
PMID:31806351 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr 4:120,392,812...120,415,616
Ensembl chr 4:120,366,542...120,415,616
|
|
G
|
Kmt5b
|
lysine methyltransferase 5B
|
involved_in
|
ISS IEA ISO
|
GO_REF:0000024 GO_REF:0000107 (PMID:28114273)
|
UniProt Ensembl RGD |
PMID:28114273 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr 1:201,000,444...201,049,819
Ensembl chr 1:201,000,444...201,049,819
|
|
G
|
Kmt5c
|
lysine methyltransferase 5C
|
involved_in
|
ISS IEA ISO
|
GO_REF:0000024 GO_REF:0000107 (PMID:28114273)
|
UniProt Ensembl RGD |
PMID:28114273 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr 1:69,099,531...69,107,145
Ensembl chr 1:69,099,539...69,107,145
|
|
G
|
Mad2l2
|
mitotic arrest deficient 2 like 2
|
involved_in
|
ISO
|
(PMID:29656893)
|
RGD |
PMID:29656893 |
|
NCBI chr 5:163,846,678...163,859,851
Ensembl chr 5:158,563,567...158,576,693
|
|
G
|
Paxip1
|
PAX interacting protein 1
|
involved_in
|
ISO
|
(PMID:20671152)
|
RGD |
PMID:20671152 |
|
NCBI chr 4:7,525,132...7,576,659
Ensembl chr 4:7,525,004...7,576,548
|
|
G
|
Rif1
|
replication timing regulatory factor 1
|
involved_in
|
ISO IEA
|
(PMID:23306439), (PMID:23333305), (PMID:23333306) GO_REF:0000107
|
RGD Ensembl |
PMID:23306439 PMID:23333305 PMID:23333306 |
GO_REF:0000107 |
NCBI chr 3:36,554,689...36,607,961
Ensembl chr 3:36,554,697...36,603,617
|
|
G
|
Shld1
|
shieldin complex subunit 1
|
involved_in
|
ISO IBA
|
(PMID:29656893) GO_REF:0000033
|
RGD GO_Central |
PMID:29656893 |
GO_REF:0000033 |
NCBI chr 3:140,391,611...140,462,273
Ensembl chr 3:119,938,833...120,009,550
|
|
G
|
Shld2
|
shieldin complex subunit 2
|
involved_in
|
ISO
|
(PMID:29656893)
|
RGD |
PMID:29656893 |
|
NCBI chr16:9,544,940...9,640,323
Ensembl chr16:9,548,660...9,639,965
|
|
G
|
Shld3
|
shieldin complex subunit 3
|
involved_in
|
ISO IEA IBA
|
(PMID:29656893) GO_REF:0000107 GO_REF:0000033
|
RGD Ensembl GO_Central |
PMID:29656893 |
GO_REF:0000033 GO_REF:0000107 |
NCBI chr 2:35,297,255...35,302,071
Ensembl chr 2:35,295,859...35,302,346
|
|
G
|
Tfrc
|
transferrin receptor
|
involved_in
|
ISS IEA ISO
|
GO_REF:0000024 GO_REF:0000107 (PMID:26642240)
|
UniProt Ensembl RGD |
PMID:26642240 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr11:68,163,413...68,185,257
Ensembl chr11:68,163,413...68,185,257
|
|
G
|
Tp53bp1
|
tumor protein p53 binding protein 1
|
involved_in
|
ISO IEA
|
(PMID:23345425), (PMID:23760478) GO_REF:0000107 (PMID:15077110), (PMID:15159415)
|
RGD Ensembl |
PMID:15077110 PMID:15159415 PMID:23345425 PMID:23760478 |
GO_REF:0000107 |
NCBI chr 3:108,166,574...108,270,229
Ensembl chr 3:108,169,980...108,269,822
|
|
|
G
|
Mlh1
|
mutL homolog 1
|
involved_in
|
IEA ISO
|
GO_REF:0000107 (PMID:10430621)
|
Ensembl RGD |
PMID:10430621 |
GO_REF:0000107 |
NCBI chr 8:120,074,871...120,112,109
Ensembl chr 8:111,196,468...111,233,617
|
|
G
|
Msh2
|
mutS homolog 2
|
involved_in
|
IEA ISO
|
GO_REF:0000107 (PMID:10430621)
|
Ensembl RGD |
PMID:10430621 |
GO_REF:0000107 |
NCBI chr 6:12,567,368...12,626,534
Ensembl chr 6:6,813,795...6,872,938
|
|
G
|
Nsd2
|
nuclear receptor binding SET domain protein 2
|
acts_upstream_of_or_within
|
ISO IEA
|
(PMID:23241889) GO_REF:0000107
|
RGD Ensembl |
PMID:23241889 |
GO_REF:0000107 |
NCBI chr14:76,833,179...76,911,304
Ensembl chr14:76,835,637...76,913,641
|
|
G
|
Pms2
|
PMS1 homolog 2, mismatch repair system component
|
involved_in
|
ISO IEA
|
UniProtKB:Q9JK91 (PMID:10430621) GO_REF:0000107
|
RGD Ensembl |
PMID:10430621 |
GO_REF:0000107 |
NCBI chr12:15,790,478...15,814,790
Ensembl chr12:10,676,764...10,701,066
|
|
G
|
Tgfb1
|
transforming growth factor, beta 1
|
involved_in acts_upstream_of_or_within
|
ISS IEA ISO
|
GO_REF:0000024 GO_REF:0000107 (PMID:14988498)
|
AgBase Ensembl RGD |
PMID:14988498 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:81,196,532...81,212,847
|
|
G
|
Tnfsf13
|
TNF superfamily member 13
|
acts_upstream_of_or_within involved_in
|
ISO IBA
|
(PMID:14988498) MGI:3038886 (PMID:14988498) GO_REF:0000033
|
RGD GO_Central |
PMID:14988498 |
GO_REF:0000033 |
NCBI chr10:54,898,805...54,901,815
Ensembl chr10:54,400,065...54,403,042
|
|
|
G
|
Clcf1
|
cardiotrophin-like cytokine factor 1
|
involved_in
|
ISO
|
(PMID:12023368)
|
RGD |
PMID:12023368 |
|
NCBI chr 1:210,937,763...210,947,064
Ensembl chr 1:201,507,859...201,517,605
|
|
G
|
Il4
|
interleukin 4
|
acts_upstream_of_or_within
|
ISO
|
(PMID:14988498)
|
RGD |
PMID:14988498 |
|
NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750
|
|
G
|
Stat6
|
signal transducer and activator of transcription 6
|
acts_upstream_of_or_within
|
ISO
|
MGI:107187 (PMID:10490661)
|
RGD |
PMID:10490661 |
|
NCBI chr 7:65,365,505...65,382,825
Ensembl chr 7:63,479,642...63,498,495
|
|
|
G
|
Atad5
|
ATPase family, AAA domain containing 5
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:4127920 (PMID:25404367) GO_REF:0000107
|
RGD Ensembl |
PMID:25404367 |
GO_REF:0000107 |
NCBI chr10:65,568,569...65,616,379
Ensembl chr10:65,070,689...65,117,845
|
|
G
|
Cd28
|
Cd28 molecule
|
acts_upstream_of_or_within
|
ISO
|
MGI:1857150 (PMID:7688139)
|
RGD |
PMID:7688139 |
|
NCBI chr 9:69,660,316...69,689,192
Ensembl chr 9:62,166,192...62,194,685
|
|
G
|
Cd40
|
CD40 molecule
|
acts_upstream_of_or_within
|
ISO
|
(PMID:12882831)
|
RGD |
PMID:12882831 |
|
NCBI chr 3:174,209,113...174,224,592
Ensembl chr 3:153,790,449...153,805,534
|
|
G
|
Ifng
|
interferon gamma
|
acts_upstream_of_or_within
|
ISO
|
(PMID:12882831)
|
RGD |
PMID:12882831 |
|
NCBI chr 7:55,789,180...55,793,216
Ensembl chr 7:53,903,337...53,907,375
|
|
G
|
Il2
|
interleukin 2
|
acts_upstream_of_or_within
|
ISO
|
MGI:1857191 (PMID:1830926)
|
RGD |
PMID:1830926 |
|
NCBI chr 2:121,932,968...121,937,672
Ensembl chr 2:120,004,862...120,009,566
|
|
G
|
Il4
|
interleukin 4
|
acts_upstream_of_or_within
|
ISO
|
(PMID:12882831), (PMID:14988498)
|
RGD |
PMID:12882831 PMID:14988498 |
|
NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750
|
|
G
|
Mlh1
|
mutL homolog 1
|
involved_in
|
IEA ISO
|
GO_REF:0000107 (PMID:10430621)
|
Ensembl RGD |
PMID:10430621 |
GO_REF:0000107 |
NCBI chr 8:120,074,871...120,112,109
Ensembl chr 8:111,196,468...111,233,617
|
|
G
|
Msh2
|
mutS homolog 2
|
involved_in
|
IEA ISO
|
GO_REF:0000107 (PMID:10430621)
|
Ensembl RGD |
PMID:10430621 |
GO_REF:0000107 |
NCBI chr 6:12,567,368...12,626,534
Ensembl chr 6:6,813,795...6,872,938
|
|
G
|
Pagr1
|
Paxip1-associated glutamate-rich protein 1
|
involved_in
|
ISO
|
(PMID:26744420)
|
RGD |
PMID:26744420 |
|
NCBI chr 1:191,053,228...191,055,554
|
|
G
|
Paxip1
|
PAX interacting protein 1
|
involved_in
|
ISO
|
(PMID:26744420)
|
RGD |
PMID:26744420 |
|
NCBI chr 4:7,525,132...7,576,659
Ensembl chr 4:7,525,004...7,576,548
|
|
G
|
Pms2
|
PMS1 homolog 2, mismatch repair system component
|
involved_in
|
ISO IEA
|
UniProtKB:Q9JK91 (PMID:10430621) GO_REF:0000107
|
RGD Ensembl |
PMID:10430621 |
GO_REF:0000107 |
NCBI chr12:15,790,478...15,814,790
Ensembl chr12:10,676,764...10,701,066
|
|
G
|
Ptprc
|
protein tyrosine phosphatase, receptor type, C
|
acts_upstream_of_or_within
|
ISO
|
MGI:2181288 (PMID:9015183)
|
RGD |
PMID:9015183 |
|
NCBI chr13:52,147,717...52,259,810
Ensembl chr13:49,596,193...49,708,692
|
|
G
|
Tbx21
|
T-box transcription factor 21
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:2180194 (PMID:12882831) GO_REF:0000107
|
RGD Ensembl |
PMID:12882831 |
GO_REF:0000107 |
NCBI chr10:82,578,751...82,595,253
Ensembl chr10:82,082,322...82,098,831
|
|
|
G
|
Aplf
|
aprataxin and PNKP like factor
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:4128102 (PMID:21211721) GO_REF:0000107
|
RGD Ensembl |
PMID:21211721 |
GO_REF:0000107 |
NCBI chr 4:120,070,471...120,122,656
Ensembl chr 4:120,070,471...120,122,633
|
|
G
|
Mir181b1
|
microRNA 181b-1
|
acts_upstream_of_or_within
|
ISO
|
(PMID:18762567)
|
RGD |
PMID:18762567 |
|
NCBI chr13:49,485,688...49,485,797
Ensembl chr13:49,485,688...49,485,797
|
|
G
|
Mir181b2
|
microRNA 181b-2
|
acts_upstream_of_or_within
|
ISO
|
(PMID:18762567)
|
RGD |
PMID:18762567 |
|
NCBI chr 3:22,616,948...22,617,035
Ensembl chr 3:22,616,948...22,617,035
|
|
G
|
Supt6h
|
SPT6 homolog, histone chaperone and transcription elongation factor
|
involved_in
|
ISO IEA
|
(PMID:21518874) GO_REF:0000107
|
RGD Ensembl |
PMID:21518874 |
GO_REF:0000107 |
NCBI chr10:63,103,920...63,140,780
Ensembl chr10:63,103,921...63,140,780
|
|
|
G
|
Foxp3
|
forkhead box P3
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:3696705 (PMID:16275384) GO_REF:0000107
|
RGD Ensembl |
PMID:16275384 |
GO_REF:0000107 |
NCBI chr X:17,580,380...17,601,181
Ensembl chr X:14,908,494...14,923,838
|
|
G
|
Il27ra
|
interleukin 27 receptor subunit alpha
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:3525439 (PMID:11057672) GO_REF:0000107
|
RGD Ensembl |
PMID:11057672 |
GO_REF:0000107 |
NCBI chr19:24,109,963...24,121,977
Ensembl chr19:24,109,972...24,121,938
|
|
G
|
Ndfip1
|
Nedd4 family interacting protein 1
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:3695433 (PMID:17137798) GO_REF:0000107
|
RGD Ensembl |
PMID:17137798 |
GO_REF:0000107 |
NCBI chr18:30,516,931...30,567,199
Ensembl chr18:30,250,613...30,322,311
|
|
G
|
Slc15a4
|
solute carrier family 15 member 4
|
involved_in
|
IEA ISO ISS
|
GO_REF:0000107 (PMID:25310967) GO_REF:0000024
|
Ensembl RGD UniProt |
PMID:25310967 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr12:29,048,634...29,082,480
Ensembl chr12:29,063,015...29,082,480
|
|
|
G
|
Adar
|
adenosine deaminase, RNA-specific
|
acts_upstream_of_or_within
|
ISO IEA
|
(PMID:23209284) GO_REF:0000107
|
RGD Ensembl |
PMID:23209284 |
GO_REF:0000107 |
NCBI chr 2:175,138,391...175,178,280
Ensembl chr 2:175,138,403...175,178,282
|
|
|
G
|
Aicda
|
activation-induced cytidine deaminase
|
involved_in
|
ISO
|
(PMID:18722174)
|
RGD |
PMID:18722174 |
|
NCBI chr 4:157,446,120...157,455,958
Ensembl chr 4:155,774,132...155,783,972
|
|
G
|
Ctnnbl1
|
catenin, beta like 1
|
involved_in
|
ISO IEA
|
(PMID:18722174) GO_REF:0000107
|
RGD Ensembl |
PMID:18722174 |
GO_REF:0000107 |
NCBI chr 3:146,387,940...146,548,987
Ensembl chr 3:146,387,889...146,548,987
|
|
G
|
Polb
|
DNA polymerase beta
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:5427084 (PMID:24388753) GO_REF:0000107
|
RGD Ensembl |
PMID:24388753 |
GO_REF:0000107 |
NCBI chr16:69,379,438...69,402,710
Ensembl chr16:69,379,400...69,404,812
|
|
|
G
|
Aicda
|
activation-induced cytidine deaminase
|
involved_in
|
ISO
|
(PMID:21518874)
|
RGD |
PMID:21518874 |
|
NCBI chr 4:157,446,120...157,455,958
Ensembl chr 4:155,774,132...155,783,972
|
|
G
|
Exo1
|
exonuclease 1
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:2653925 (PMID:14716311) GO_REF:0000107
|
RGD Ensembl |
PMID:14716311 |
GO_REF:0000107 |
NCBI chr13:87,809,725...87,834,654
Ensembl chr13:87,809,810...87,834,654
|
|
G
|
Hmces
|
5-hydroxymethylcytosine binding, ES cell specific
|
involved_in
|
ISS IEA ISO
|
GO_REF:0000024 GO_REF:0000107 (PMID:35450882)
|
UniProt Ensembl RGD |
PMID:35450882 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr 4:120,392,812...120,415,616
Ensembl chr 4:120,366,542...120,415,616
|
|
G
|
Mcm3ap
|
minichromosome maintenance complex component 3 associated protein
|
involved_in
|
ISO IEA
|
(PMID:23652018) GO_REF:0000107
|
RGD Ensembl |
PMID:23652018 |
GO_REF:0000107 |
NCBI chr20:12,127,570...12,165,165
Ensembl chr20:12,127,570...12,165,165
|
|
G
|
Mlh1
|
mutL homolog 1
|
involved_in acts_upstream_of_or_within
|
IBA IEA ISO
|
GO_REF:0000033 GO_REF:0000107 MGI:1857946 (PMID:10092760), (PMID:10429667)
|
GO_Central Ensembl RGD |
PMID:10092760 PMID:10429667 |
GO_REF:0000033 GO_REF:0000107 |
NCBI chr 8:120,074,871...120,112,109
Ensembl chr 8:111,196,468...111,233,617
|
|
G
|
Msh2
|
mutS homolog 2
|
acts_upstream_of_or_within NOT|acts_upstream_of_or_within
|
ISO IEA
|
MGI:109352|MGI:1857940|MGI:1858055|MGI:2680817 (PMID:14568978), (PMID:15494304), (PMID:9607916), (PMID:9697842), (PMID:9697843) GO_REF:0000107 MGI:1858055 (PMID:9607915)
|
RGD Ensembl |
PMID:9607915 PMID:9607916 PMID:9697842 PMID:9697843 PMID:14568978 PMID:15494304 More...
|
GO_REF:0000107 |
NCBI chr 6:12,567,368...12,626,534
Ensembl chr 6:6,813,795...6,872,938
|
|
G
|
Msh3
|
mutS homolog 3
|
NOT|acts_upstream_of_or_within
|
ISO
|
MGI:1858056 (PMID:10662804)
|
RGD |
PMID:10662804 |
|
NCBI chr 2:25,179,400...25,320,857
|
|
G
|
Msh6
|
mutS homolog 6
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:1858014|MGI:3653701 (PMID:10662804), (PMID:15238604), (PMID:16618598), (PMID:17015724) GO_REF:0000107
|
RGD Ensembl |
PMID:10662804 PMID:15238604 PMID:16618598 PMID:17015724 |
GO_REF:0000107 |
NCBI chr 6:12,316,190...12,333,505
Ensembl chr 6:6,562,632...6,579,956
|
|
G
|
Nuggc
|
nuclear GTPase, germinal center associated
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:5449552 (PMID:22833677) GO_REF:0000107
|
RGD Ensembl |
PMID:22833677 |
GO_REF:0000107 |
NCBI chr15:39,821,851...39,866,122
Ensembl chr15:39,821,855...39,866,122
|
|
G
|
Pms2
|
PMS1 homolog 2, mismatch repair system component
|
involved_in acts_upstream_of_or_within
|
IBA IEA ISO
|
GO_REF:0000033 GO_REF:0000107 (PMID:9618520) MGI:1857947 (PMID:10429667)
|
GO_Central Ensembl RGD |
PMID:9618520 PMID:10429667 |
GO_REF:0000033 GO_REF:0000107 |
NCBI chr12:15,790,478...15,814,790
Ensembl chr12:10,676,764...10,701,066
|
|
G
|
Polb
|
DNA polymerase beta
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:5427084 (PMID:24388753) GO_REF:0000107
|
RGD Ensembl |
PMID:24388753 |
GO_REF:0000107 |
NCBI chr16:69,379,438...69,402,710
Ensembl chr16:69,379,400...69,404,812
|
|
G
|
Polm
|
DNA polymerase mu
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:2179233 (PMID:15789338) GO_REF:0000107
|
RGD Ensembl |
PMID:15789338 |
GO_REF:0000107 |
NCBI chr14:84,921,039...84,930,649
Ensembl chr14:80,706,345...80,717,086
|
|
G
|
Polq
|
DNA polymerase theta
|
involved_in
|
ISO IEA
|
(PMID:16172387), (PMID:16222339), (PMID:16890500) GO_REF:0000107
|
RGD Ensembl |
PMID:16172387 PMID:16222339 PMID:16890500 |
GO_REF:0000107 |
NCBI chr11:63,673,796...63,775,905
Ensembl chr11:63,673,816...63,775,878
|
|
G
|
Samhd1
|
SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1
|
involved_in
|
ISO IEA
|
(PMID:29669924) GO_REF:0000107
|
RGD Ensembl |
PMID:29669924 |
GO_REF:0000107 |
NCBI chr 3:145,761,549...145,794,420
Ensembl chr 3:145,761,558...145,794,386
|
|
G
|
Ung
|
uracil-DNA glycosylase
|
acts_upstream_of_or_within
|
ISO
|
MGI:101816|MGI:2182610 (PMID:15494304), (PMID:17015724)
|
RGD |
PMID:15494304 PMID:17015724 |
|
NCBI chr12:48,145,838...48,154,789
Ensembl chr12:42,485,276...42,494,206
|
|
|
G
|
Mlh1
|
mutL homolog 1
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:1857946 (PMID:11828012) GO_REF:0000107
|
RGD Ensembl |
PMID:11828012 |
GO_REF:0000107 |
NCBI chr 8:120,074,871...120,112,109
Ensembl chr 8:111,196,468...111,233,617
|
|
G
|
Msh2
|
mutS homolog 2
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:109352|MGI:1857940|MGI:2151801|MGI:2680817 (PMID:11828012), (PMID:14563316), (PMID:14568978), (PMID:15494304), (PMID:15955838) GO_REF:0000107
|
RGD Ensembl |
PMID:11828012 PMID:14563316 PMID:14568978 PMID:15494304 PMID:15955838 |
GO_REF:0000107 |
NCBI chr 6:12,567,368...12,626,534
Ensembl chr 6:6,813,795...6,872,938
|
|
G
|
Msh3
|
mutS homolog 3
|
acts_upstream_of_or_within
|
ISO
|
MGI:1858056 (PMID:15238604)
|
RGD |
PMID:15238604 |
|
NCBI chr 2:25,179,400...25,320,857
|
|
G
|
Msh6
|
mutS homolog 6
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:1858014 (PMID:15238604) GO_REF:0000107
|
RGD Ensembl |
PMID:15238604 |
GO_REF:0000107 |
NCBI chr 6:12,316,190...12,333,505
Ensembl chr 6:6,562,632...6,579,956
|
|
G
|
Pms2
|
PMS1 homolog 2, mismatch repair system component
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:1857947 (PMID:11828012) GO_REF:0000107
|
RGD Ensembl |
PMID:11828012 |
GO_REF:0000107 |
NCBI chr12:15,790,478...15,814,790
Ensembl chr12:10,676,764...10,701,066
|
|
G
|
Ung
|
uracil-DNA glycosylase
|
acts_upstream_of_or_within
|
ISO
|
MGI:101816|MGI:2182610 (PMID:15494304)
|
RGD |
PMID:15494304 |
|
NCBI chr12:48,145,838...48,154,789
Ensembl chr12:42,485,276...42,494,206
|
|
|
G
|
Mlh1
|
mutL homolog 1
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:101816 (PMID:12743174) GO_REF:0000107
|
RGD Ensembl |
PMID:12743174 |
GO_REF:0000107 |
NCBI chr 8:120,074,871...120,112,109
Ensembl chr 8:111,196,468...111,233,617
|
|
G
|
Msh2
|
mutS homolog 2
|
involved_in acts_upstream_of_or_within
|
IBA IEA ISO
|
GO_REF:0000033 GO_REF:0000107 MGI:101938 (PMID:12743174)
|
GO_Central Ensembl RGD |
PMID:12743174 |
GO_REF:0000033 GO_REF:0000107 |
NCBI chr 6:12,567,368...12,626,534
Ensembl chr 6:6,813,795...6,872,938
|
|
|
G
|
Bcl11b
|
BCL11 transcription factor B
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:2663971 (PMID:12717433) GO_REF:0000107
|
RGD Ensembl |
PMID:12717433 |
GO_REF:0000107 |
NCBI chr 6:132,598,968...132,692,123
Ensembl chr 6:126,834,531...126,928,224
|
|
G
|
Lef1
|
lymphoid enhancer binding factor 1
|
acts_upstream_of_or_within
|
ISO IEA
|
MGI:98507 (PMID:9462507) GO_REF:0000107
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RGD Ensembl |
PMID:9462507 |
GO_REF:0000107 |
NCBI chr 2:222,340,541...222,453,931
Ensembl chr 2:219,666,592...219,779,794
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G
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Lig4
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DNA ligase 4
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acts_upstream_of_or_within
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ISO
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MGI:1857732 (PMID:10911993)
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RGD |
PMID:10911993 |
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NCBI chr16:86,220,345...86,228,930
Ensembl chr16:79,518,312...79,527,040
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G
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Prkdc
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protein kinase, DNA-activated, catalytic subunit
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acts_upstream_of_or_within
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ISO IEA
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MGI:2383951 (PMID:9768755) GO_REF:0000107
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RGD Ensembl |
PMID:9768755 |
GO_REF:0000107 |
NCBI chr11:98,544,952...98,762,499
Ensembl chr11:85,040,792...85,257,952
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G
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Tcf7
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transcription factor 7
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acts_upstream_of_or_within
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ISO
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MGI:96770 (PMID:9462507)
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RGD |
PMID:9462507 |
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NCBI chr10:36,924,363...36,954,279
Ensembl chr10:36,423,445...36,453,535
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G
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Atm
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ATM serine/threonine kinase
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acts_upstream_of_or_within
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ISO
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MGI:104779 (PMID:23836881)
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RGD |
PMID:23836881 |
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NCBI chr 8:62,724,939...62,829,040
Ensembl chr 8:53,831,093...53,932,437
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G
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Dcaf1
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DDB1 and CUL4 associated factor 1
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involved_in
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ISO
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(PMID:22157821)
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RGD |
PMID:22157821 |
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NCBI chr 8:116,344,927...116,419,329
Ensembl chr 8:107,474,312...107,540,627
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G
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Dclre1c
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DNA cross-link repair 1C
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acts_upstream_of_or_within
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ISO
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(PMID:23836881)
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RGD |
PMID:23836881 |
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NCBI chr17:79,684,988...79,718,399
Ensembl chr17:74,776,935...74,809,186
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G
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Hmgb1
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high mobility group box 1
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involved_in
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ISO
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(PMID:9166431)
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RGD |
PMID:9166431 |
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NCBI chr12:11,009,236...11,015,941
Ensembl chr12:5,901,586...5,978,565 Ensembl chr16:5,901,586...5,978,565
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G
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Lig1
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DNA ligase 1
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NOT|involved_in
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ISO
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(PMID:9809069)
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RGD |
PMID:9809069 |
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NCBI chr 1:74,165,688...74,204,400
Ensembl chr 1:74,165,842...74,204,413
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G
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Lig3
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DNA ligase 3
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NOT|involved_in
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ISO
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(PMID:9809069)
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RGD |
PMID:9809069 |
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NCBI chr10:67,717,808...67,741,141
Ensembl chr10:67,717,812...67,798,414
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G
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Lig4
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DNA ligase 4
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involved_in acts_upstream_of_or_within
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ISO
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(PMID:9809069) MGI:1857732 (PMID:10716994), (PMID:15194694)
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RGD |
PMID:9809069 PMID:10716994 PMID:15194694 |
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NCBI chr16:86,220,345...86,228,930
Ensembl chr16:79,518,312...79,527,040
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G
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Prkdc
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protein kinase, DNA-activated, catalytic subunit
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acts_upstream_of_or_within
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ISO IEA
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MGI:107202 (PMID:23836881) GO_REF:0000107
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RGD Ensembl |
PMID:23836881 |
GO_REF:0000107 |
NCBI chr11:98,544,952...98,762,499
Ensembl chr11:85,040,792...85,257,952
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G
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Rag1
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recombination activating 1
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involved_in acts_upstream_of_or_within
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ISO IEA IBA
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(PMID:14670978) GO_REF:0000107 GO_REF:0000002 GO_REF:0000104 (PMID:10601033), (PMID:1547488), (PMID:20122409), (PMID:8284210) MGI:97849 (PMID:2360047) GO_REF:0000033
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RGD Ensembl InterPro UniProt GO_Central |
PMID:1547488 PMID:2360047 PMID:8284210 PMID:10601033 PMID:14670978 PMID:20122409 More...
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GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 |
NCBI chr 3:108,372,087...108,383,184
Ensembl chr 3:87,917,004...87,928,291
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G
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Rag2
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recombination activating 2
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involved_in acts_upstream_of_or_within
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IBA IEA ISO
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GO_REF:0000033 GO_REF:0000107 (PMID:1547488), (PMID:18033247) MGI:97848 (PMID:2360047)
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GO_Central Ensembl RGD |
PMID:1547488 PMID:2360047 PMID:18033247 |
GO_REF:0000033 GO_REF:0000107 |
NCBI chr 3:108,357,399...108,367,186
Ensembl chr 3:87,902,238...87,911,066
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G
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Xrcc4
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X-ray repair cross complementing 4
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acts_upstream_of_or_within
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ISO
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MGI:1926771 (PMID:10716994), (PMID:15194694)
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RGD |
PMID:10716994 PMID:15194694 |
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NCBI chr 2:22,686,506...22,932,929
Ensembl chr 2:20,951,200...21,197,808
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G
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Xrcc6
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X-ray repair cross complementing 6
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acts_upstream_of_or_within
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ISO
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MGI:2179954 (PMID:10716994)
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RGD |
PMID:10716994 |
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NCBI chr 7:115,423,026...115,443,884
Ensembl chr 7:113,543,057...113,563,762
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