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ONTOLOGY REPORT - ANNOTATIONS


Term:cytoplasmic translation
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Accession:GO:0002181 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
Comment:Note that this term applies to translation performed by cytoplasmic ribosomes, which is distinct from translation performed by organellar ribosomes. For mitochondrial translation, consider GO:0032543 'mitochondrial translation' or its child terms.


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cytoplasmic translation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CKAP5 cytoskeleton associated protein 5 ISO (MGI:MGI:5546446|PMID:23936366) MGI PMID:23936366 MGI:MGI:5546446 NCBI chr18:42,673,432...42,780,320
Ensembl chr18:42,711,471...42,780,090
JBrowse link
G DRG1 developmentally regulated GTP binding protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:24,327,714...24,350,782
Ensembl chr26:24,327,739...24,350,659
JBrowse link
G DRG2 developmentally regulated GTP binding protein 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:41,428,233...41,445,706
Ensembl chr 5:41,428,802...41,445,649
JBrowse link
G EIF4B eukaryotic translation initiation factor 4B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:2,118,233...2,150,455
Ensembl chr27:2,120,011...2,150,336
JBrowse link
G EIF4H eukaryotic translation initiation factor 4H IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:6,180,189...6,202,835
Ensembl chr 6:6,181,827...6,207,116
JBrowse link
G FTSJ1 FtsJ RNA 2'-O-methyltransferase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:41,725,101...41,734,533
Ensembl chr  X:41,725,130...41,734,378
JBrowse link
G LOC100683928 60S ribosomal protein L31 pseudogene IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:31,374,467...31,374,878 JBrowse link
G LOC100684485 60S ribosomal protein L38-like ISO (PMID:25957688) UniProtKB PMID:25957688 NCBI chr31:11,746,348...11,748,650 JBrowse link
G LOC100685664 ribosomal protein L35a pseudogene IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:23,437,438...23,437,770 JBrowse link
G LOC100687722 ribosomal protein, large, P1 pseudogene IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:50,703,133...50,703,477 JBrowse link
G LOC100855666 60S ribosomal protein L9-like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:31,913,968...31,914,666 JBrowse link
G LOC106557880 60S ribosomal protein L31 pseudogene IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:41,984,718...41,985,115 JBrowse link
G LOC106558083 60S ribosomal protein L6 pseudogene IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr31:2,347,349...2,350,949 JBrowse link
G LOC106559613 60S ribosomal protein L17 pseudogene IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:12,340,847...12,341,465 JBrowse link
G LOC106559787 60S ribosomal protein L17 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:51,161,739...51,162,360 JBrowse link
G LOC475097 60S ribosomal protein L17 pseudogene IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:23,497,526...23,498,092 JBrowse link
G LOC479385 60S ribosomal protein L29 pseudogene IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:964,235...964,900 JBrowse link
G LOC607190 ribosomal protein L31 pseudogene IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:12,894,939...12,895,354 JBrowse link
G LOC608703 60S ribosomal protein L26 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:15,910,414...15,910,935 JBrowse link
G LOC609137 ribosomal protein L31 pseudogene IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:89,014,960...89,015,368 JBrowse link
G LOC609320 ribosomal protein, large, P0 pseudogene IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:16,767,597...16,768,671 JBrowse link
G LOC610034 ribosomal protein L31 pseudogene IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr23:17,873,707...17,874,136 JBrowse link
G RPL10A ribosomal protein L10a ISO (PMID:25957688) UniProtKB PMID:25957688 NCBI chr12:4,601,760...4,604,142
Ensembl chr12:4,601,766...4,604,220
JBrowse link
G RPL11 ribosomal protein L11 IEA Ensembl GO_REF:0000107 NCBI chr 2:75,781,210...75,785,614
Ensembl chr 2:75,781,091...75,785,605
JBrowse link
G RPL15 ribosomal protein L15 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr23:19,825,622...19,829,807
Ensembl chr23:19,825,622...19,829,807
JBrowse link
G RPL17 ribosomal protein L17 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:79,264,088...79,268,083
Ensembl chr 7:79,264,098...79,268,123
JBrowse link
G RPL18 ribosomal protein L18 ISS UniProtKB GO_REF:0000024 NCBI chr 1:107,690,021...107,694,586
Ensembl chr 1:107,688,074...107,694,596
JBrowse link
G RPL18A ribosomal protein L18a ISO (PMID:25957688) UniProtKB PMID:25957688 NCBI chr20:45,036,543...45,040,009 JBrowse link
G RPL19 ribosomal protein L19 IEA Ensembl GO_REF:0000107 NCBI chr 9:23,171,508...23,175,656
Ensembl chr 9:23,171,508...23,175,656
JBrowse link
G RPL22L1 ribosomal protein L22 like 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr34:35,298,980...35,302,728
Ensembl chr34:35,298,907...35,302,688
JBrowse link
G RPL24 ribosomal protein L24 IEA Ensembl GO_REF:0000107 NCBI chr33:8,018,183...8,023,779
Ensembl chr33:8,018,190...8,073,124
JBrowse link
G RPL26 ribosomal protein L26 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:33,152,114...33,158,237
Ensembl chr 5:33,152,113...33,158,302
JBrowse link
G RPL29 ribosomal protein L29 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:37,727,161...37,729,738 JBrowse link
G RPL30 ribosomal protein L30 ISO (PMID:25957688) UniProtKB PMID:25957688 NCBI chr13:301,263...304,854 JBrowse link
G RPL31 ribosomal protein L31 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr32:29,400,195...29,400,624
Ensembl chr32:29,400,216...29,400,593
JBrowse link
G RPL31 ribosomal protein L31 ISO (PMID:25957688) UniProtKB PMID:25957688 NCBI chr10:41,812,129...41,842,341 JBrowse link
G RPL35A ribosomal protein L35a IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr33:28,741,796...28,745,043
Ensembl chr33:28,741,819...28,744,672
JBrowse link
G RPL36 ribosomal protein L36 ISO (PMID:25957688) UniProtKB PMID:25957688 NCBI chr20:54,334,256...54,335,169 JBrowse link
G RPL36 ribosomal protein L36 IEA Ensembl GO_REF:0000107 Ensembl chr20:54,333,293...54,335,032 JBrowse link
G RPL36A ribosomal protein L36a ISO (PMID:25957688) UniProtKB PMID:25957688 NCBI chr  X:75,306,438...75,309,310
Ensembl chr  X:75,306,413...75,309,382
JBrowse link
G RPL39 ribosomal protein L39 ISO (PMID:25957688) UniProtKB PMID:25957688 NCBI chr  X:91,812,101...91,816,445
Ensembl chr  X:91,811,837...91,816,319
JBrowse link
G RPL6 ribosomal protein L6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:9,970,416...9,975,897 JBrowse link
G RPL8 ribosomal protein L8 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:38,101,879...38,104,772
Ensembl chr13:38,102,010...38,104,770
JBrowse link
G RPL9 ribosomal protein L9 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:72,989,526...72,993,944
Ensembl chr 3:72,989,592...72,993,949
JBrowse link
G RPLP0 ribosomal protein lateral stalk subunit P0 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:16,148,463...16,154,048
Ensembl chr26:16,148,460...16,153,614
JBrowse link
G RPS21 ribosomal protein S21 IEA Ensembl GO_REF:0000107 NCBI chr24:46,361,607...46,362,315
Ensembl chr24:46,195,897...46,362,296
JBrowse link
G RPS23 ribosomal protein S23 IEA Ensembl GO_REF:0000107 NCBI chr 3:25,208,812...25,210,492
Ensembl chr 3:25,208,920...25,210,489
JBrowse link
G RPS26 ribosomal protein S26 ISO (PMID:25957688) UniProtKB PMID:25957688 NCBI chr10:362,699...364,406
Ensembl chr10:362,694...364,420
JBrowse link
G RPS28 ribosomal protein S28 IEA Ensembl GO_REF:0000107 NCBI chr20:52,901,953...52,903,244
Ensembl chr20:52,902,031...52,903,244
JBrowse link
G RPS29 ribosomal protein S29 ISO (PMID:25957688) UniProtKB PMID:25957688 NCBI chr 8:26,221,546...26,223,580 JBrowse link
G RWDD1 RWD domain containing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:56,986,809...57,008,720
Ensembl chr 1:56,987,202...57,007,037
JBrowse link
G TMA7 translation machinery associated 7 homolog IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:40,713,865...40,714,228
Ensembl chr27:40,713,879...40,714,073
JBrowse link
G ZC3H15 zinc finger CCCH-type containing 15 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr36:28,730,213...28,743,884
Ensembl chr36:28,725,079...28,743,884
JBrowse link
cap-dependent translational initiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EIF3D eukaryotic translation initiation factor 3 subunit D IEA UniProtKB GO_REF:0000104 NCBI chr10:27,890,913...27,904,887
Ensembl chr10:27,890,938...27,904,886
JBrowse link
cytoplasmic translational initiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EIF2B3 eukaryotic translation initiation factor 2B subunit gamma IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:15,337,421...15,481,427
Ensembl chr15:15,337,483...15,481,425
JBrowse link
G EIF3I eukaryotic translation initiation factor 3 subunit I IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:68,977,359...68,986,004
Ensembl chr 2:68,977,365...68,986,330
JBrowse link
G EIF3M eukaryotic translation initiation factor 3 subunit M IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:34,944,181...35,036,686
Ensembl chr18:34,944,181...35,033,541
JBrowse link
G EIF4A1 eukaryotic translation initiation factor 4A1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:32,495,606...32,500,805
Ensembl chr 5:32,484,572...32,500,805
JBrowse link
G EIF4A2 eukaryotic translation initiation factor 4A2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr34:19,354,739...19,361,021
Ensembl chr34:19,354,825...19,409,844
JBrowse link
G LOC479485 eukaryotic translation initiation factor 4A1 pseudogene IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:24,248,428...24,249,949 JBrowse link
cytoplasmic translational termination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ETF1 eukaryotic translation termination factor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:26,078,611...26,110,805
Ensembl chr11:26,080,478...26,110,894
JBrowse link
formation of cytoplasmic translation initiation complex term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EIF2S2 eukaryotic translation initiation factor 2 subunit beta IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:23,268,263...23,289,038
Ensembl chr24:23,269,309...23,288,988
JBrowse link
G EIF3A eukaryotic translation initiation factor 3 subunit A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:29,290,668...29,326,851
Ensembl chr28:29,291,422...29,326,701
JBrowse link
G EIF3B eukaryotic translation initiation factor 3 subunit B IEA UniProt GO_REF:0000104 NCBI chr 6:14,780,318...14,802,938
Ensembl chr 6:14,781,215...14,803,883
JBrowse link
G EIF3D eukaryotic translation initiation factor 3 subunit D IEA UniProtKB GO_REF:0000104 NCBI chr10:27,890,913...27,904,887
Ensembl chr10:27,890,938...27,904,886
JBrowse link
G EIF3E eukaryotic translation initiation factor 3 subunit E IEA UniProtKB GO_REF:0000104 NCBI chr13:8,834,724...8,887,818
Ensembl chr13:8,834,821...8,887,760
JBrowse link
G EIF3F eukaryotic translation initiation factor 3 subunit F IEA UniProt GO_REF:0000104 NCBI chr21:31,514,930...31,525,651
Ensembl chr21:31,517,777...31,525,644
JBrowse link
G EIF3G eukaryotic translation initiation factor 3 subunit G IEA UniProtKB GO_REF:0000104 NCBI chr20:50,941,413...50,946,042
Ensembl chr20:50,941,503...50,946,041
JBrowse link
G EIF3H eukaryotic translation initiation factor 3 subunit H IEA UniProt GO_REF:0000104 NCBI chr13:16,105,960...16,201,902
Ensembl chr13:16,105,990...16,341,153
JBrowse link
G EIF3I eukaryotic translation initiation factor 3 subunit I IEA UniProt GO_REF:0000104 NCBI chr 2:68,977,359...68,986,004
Ensembl chr 2:68,977,365...68,986,330
JBrowse link
G EIF3J eukaryotic translation initiation factor 3 subunit J IEA UniProtKB GO_REF:0000104 NCBI chr30:11,207,620...11,233,106
Ensembl chr30:11,207,651...11,232,717
JBrowse link
G EIF3K eukaryotic translation initiation factor 3 subunit K IEA UniProtKB GO_REF:0000104 NCBI chr 1:114,433,373...114,443,911
Ensembl chr 1:114,433,375...114,443,902
JBrowse link
G EIF3L eukaryotic translation initiation factor 3 subunit L IEA UniProtKB GO_REF:0000104 NCBI chr10:26,757,639...26,784,908
Ensembl chr10:26,757,639...26,785,008
JBrowse link
G EIF3M eukaryotic translation initiation factor 3 subunit M IEA UniProtKB GO_REF:0000104 NCBI chr18:34,944,181...35,036,686
Ensembl chr18:34,944,181...35,033,541
JBrowse link
G EIF5 eukaryotic translation initiation factor 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:71,102,628...71,111,971
Ensembl chr 8:71,102,690...71,270,399
JBrowse link
G LOC479795 eukaryotic translation initiation factor 3 subunit C IEA UniProtKB GO_REF:0000104 NCBI chr 6:18,276,824...18,299,336 JBrowse link
G LOC607979 eukaryotic translation initiation factor 3, subunit L pseudogene IEA UniProt GO_REF:0000104 NCBI chr32:12,786,465...12,788,360 JBrowse link
formation of translation preinitiation complex term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DENR density regulated re-initiation and release factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:6,700,708...6,715,513
Ensembl chr26:6,702,362...6,715,823
JBrowse link
G DHX29 DExH-box helicase 29 IEA Ensembl GO_REF:0000107 NCBI chr 2:42,611,630...42,660,328
Ensembl chr 2:42,611,632...42,660,207
JBrowse link
G EIF2D eukaryotic translation initiation factor 2D IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr38:2,851,972...2,871,574
Ensembl chr38:2,851,978...2,871,518
JBrowse link
G EIF2S2 eukaryotic translation initiation factor 2 subunit beta IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:23,268,263...23,289,038
Ensembl chr24:23,269,309...23,288,988
JBrowse link
G EIF2S3 eukaryotic translation initiation factor 2 subunit gamma IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:19,662,132...19,680,223
Ensembl chr  X:19,650,343...19,680,221
JBrowse link
G EIF4B eukaryotic translation initiation factor 4B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:2,118,233...2,150,455
Ensembl chr27:2,120,011...2,150,336
JBrowse link
G EIF4H eukaryotic translation initiation factor 4H IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:6,180,189...6,202,835
Ensembl chr 6:6,181,827...6,207,116
JBrowse link
G EIF5 eukaryotic translation initiation factor 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:71,102,628...71,111,971
Ensembl chr 8:71,102,690...71,270,399
JBrowse link
G LOC487150 malignant T-cell-amplified sequence 1-like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:30,713,670...30,717,207 JBrowse link
G MCTS1 MCTS1 re-initiation and release factor IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr  X:92,559,648...92,574,576
Ensembl chr  X:92,559,899...92,570,366
JBrowse link
G RPS2 ribosomal protein S2 ISO RGD PMID:344063 RGD:2299070 NCBI chr 6:38,966,830...38,968,743 JBrowse link
IRES-dependent translational initiation of linear mRNA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 IEA Ensembl GO_REF:0000107 NCBI chr16:27,389,850...27,410,154
Ensembl chr16:27,390,181...27,410,110
JBrowse link
G RBM14 RNA binding motif protein 14 IEA Ensembl GO_REF:0000107 NCBI chr18:50,683,227...50,728,512
Ensembl chr18:50,705,024...50,811,319
JBrowse link
negative regulation of cytoplasmic translation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CPEB1 cytoplasmic polyadenylation element binding protein 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 3:54,405,140...54,499,614
Ensembl chr 3:54,405,717...54,500,221
JBrowse link
G CPEB2 cytoplasmic polyadenylation element binding protein 2 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 3:65,200,175...65,277,353
Ensembl chr 3:65,203,759...65,267,967
JBrowse link
G CPEB3 cytoplasmic polyadenylation element binding protein 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:6,523,894...6,724,010
Ensembl chr28:6,529,212...6,723,454
JBrowse link
G CPEB4 cytoplasmic polyadenylation element binding protein 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:38,604,065...38,665,200
Ensembl chr 4:38,607,948...38,664,821
JBrowse link
G FMR1 FMRP translational regulator 1 ISO (MGI:MGI:5767073|PMID:11376146) UniProtKB PMID:11376146 MGI:MGI:5767073 NCBI chr  X:116,249,079...116,287,008
Ensembl chr  X:116,249,142...116,321,439
JBrowse link
G RBM24 RNA binding motif protein 24 ISO (PMID:29358667) UniProtKB PMID:29358667 NCBI chr35:16,255,076...16,294,967 JBrowse link
G UNK unk zinc finger IEA Ensembl GO_REF:0000107 NCBI chr 9:4,767,696...4,801,324
Ensembl chr 9:4,767,743...4,801,235
JBrowse link
negative regulation of cytoplasmic translational elongation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CPEB3 cytoplasmic polyadenylation element binding protein 3 ISO (MGI:MGI:5314154|PMID:22157746) UniProtKB PMID:22157746 MGI:MGI:5314154 NCBI chr28:6,523,894...6,724,010
Ensembl chr28:6,529,212...6,723,454
JBrowse link
negative regulation of formation of translation preinitiation complex term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPL13A ribosomal protein L13a ISS
IEA
UniProtKB
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr 1:107,010,190...107,014,267
Ensembl chr 1:107,010,190...107,014,267
JBrowse link
peptidyl-diphthamide biosynthetic process from peptidyl-histidine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPH1 diphthamide biosynthesis 1 IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000041 NCBI chr 9:46,137,573...46,147,829
Ensembl chr 9:46,137,660...46,147,854
JBrowse link
G DPH2 diphthamide biosynthesis 2 IEA
IBA
(PMID:21873635) UniProtKB
InterPro
GO_Central
PMID:21873635 GO_REF:0000002, GO_REF:0000041 NCBI chr15:16,287,300...16,291,079
Ensembl chr15:16,288,370...16,291,032
JBrowse link
G DPH3 diphthamide biosynthesis 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr23:26,522,367...26,529,808
Ensembl chr23:26,522,374...26,527,827
JBrowse link
G DPH5 diphthamide biosynthesis 5 IEA UniProt GO_REF:0000041 NCBI chr 6:49,095,188...49,131,427
Ensembl chr 6:49,095,895...49,130,484
JBrowse link
G DPH6 diphthamine biosynthesis 6 IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000041 NCBI chr30:3,000,723...3,146,568
Ensembl chr30:2,980,437...3,146,568
JBrowse link
G DPH7 diphthamide biosynthesis 7 ISO (PMID:19965467) UniProtKB PMID:19965467 NCBI chr 9:48,210,254...48,220,186
Ensembl chr 9:48,207,392...48,220,047
JBrowse link
positive regulation of cap-dependent translational initiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NCK1 NCK adaptor protein 1 IEA Ensembl GO_REF:0000107 NCBI chr23:33,297,660...33,374,025
Ensembl chr23:33,297,756...33,372,534
JBrowse link
positive regulation of cap-independent translational initiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G METTL3 methyltransferase like 3 IEA Ensembl GO_REF:0000107 NCBI chr15:18,528,755...18,546,303
Ensembl chr15:18,528,772...18,546,531
JBrowse link
G NCK1 NCK adaptor protein 1 IEA Ensembl GO_REF:0000107 NCBI chr23:33,297,660...33,374,025
Ensembl chr23:33,297,756...33,372,534
JBrowse link
G YTHDF2 YTH N6-methyladenosine RNA binding protein 2 IEA Ensembl GO_REF:0000107 NCBI chr 2:71,760,232...71,791,420
Ensembl chr 2:71,760,312...71,792,527
JBrowse link
positive regulation of cytoplasmic translation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNBP CCHC-type zinc finger nucleic acid binding protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:2,860,915...2,929,307
Ensembl chr20:2,916,624...2,929,303
JBrowse link
G DHX36 DEAH-box helicase 36 IEA Ensembl GO_REF:0000107 NCBI chr23:48,404,351...48,456,360
Ensembl chr23:48,407,316...48,456,654
JBrowse link
G DHX9 DExH-box helicase 9 IEA Ensembl GO_REF:0000107 NCBI chr 7:16,233,763...16,292,576
Ensembl chr 7:16,233,814...16,292,618
JBrowse link
G EEF2 eukaryotic translation elongation factor 2 ISO RGD PMID:19625250 RGD:10401254 NCBI chr20:55,577,413...55,586,422
Ensembl chr20:55,522,213...55,586,126
JBrowse link
G LIN28A lin-28 homolog A IEA Ensembl GO_REF:0000107 NCBI chr 2:73,613,069...73,628,211
Ensembl chr 2:73,614,531...73,628,211
JBrowse link
G PKM pyruvate kinase M1/2 ISO (MGI:MGI:6331015|PMID:28575669) UniProt PMID:28575669 MGI:MGI:6331015 NCBI chr30:35,712,853...35,737,643 JBrowse link
G ZCCHC13 zinc finger CCHC-type containing 13 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:57,603,420...57,604,605
Ensembl chr  X:57,603,525...57,604,040
JBrowse link
regulation of cytoplasmic translation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHX9 DExH-box helicase 9 ISO (PMID:28355180) UniProtKB PMID:28355180 NCBI chr 7:16,233,763...16,292,576
Ensembl chr 7:16,233,814...16,292,618
JBrowse link
G ZNF385A zinc finger protein 385A IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr27:928,250...948,275
Ensembl chr27:928,349...947,186
JBrowse link
regulation of cytoplasmic translational fidelity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AARS1 alanyl-tRNA synthetase 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:76,288,780...76,343,262
Ensembl chr 5:76,288,782...76,343,207
JBrowse link
translation reinitiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DENR density regulated re-initiation and release factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:6,700,708...6,715,513
Ensembl chr26:6,702,362...6,715,823
JBrowse link
G EIF3A eukaryotic translation initiation factor 3 subunit A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:29,290,668...29,326,851
Ensembl chr28:29,291,422...29,326,701
JBrowse link
G LOC487150 malignant T-cell-amplified sequence 1-like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:30,713,670...30,717,207 JBrowse link
G MCTS1 MCTS1 re-initiation and release factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:92,559,648...92,574,576
Ensembl chr  X:92,559,899...92,570,366
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16162
    metabolic process 10639
      primary metabolic process 9451
        protein metabolic process 5375
          cellular protein metabolic process 4805
            translation 674
              cytoplasmic translation 109
                cytoplasmic alanyl-tRNA aminoacylation 0
                cytoplasmic translational elongation + 8
                cytoplasmic translational initiation + 35
                cytoplasmic translational termination + 1
                negative regulation of cytoplasmic translation + 8
                positive regulation of cytoplasmic translation + 10
                regulation of cytoplasmic translation + 26
Path 2
Term Annotations click to browse term
  biological_process 16162
    metabolic process 10639
      cellular metabolic process 9631
        cellular nitrogen compound metabolic process 5695
          cellular amide metabolic process 1067
            amide biosynthetic process 808
              peptide biosynthetic process 691
                translation 674
                  cytoplasmic translation 109
                    cytoplasmic alanyl-tRNA aminoacylation 0
                    cytoplasmic translational elongation + 8
                    cytoplasmic translational initiation + 35
                    cytoplasmic translational termination + 1
                    negative regulation of cytoplasmic translation + 8
                    positive regulation of cytoplasmic translation + 10
                    regulation of cytoplasmic translation + 26
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.