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ONTOLOGY REPORT - ANNOTATIONS

Term:stereocilia coupling link
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Accession:GO:0002139 term browser browse the term
Definition:A structure involved in coupling stereocilia to one another in sensory hair cells There are four morphologically distinct types: tip links, horizontal top connectors, shaft connectors and ankle links. Tip links and horizontal top connectors are the only inter-stereocilia links associated with mature cochlea, whereas ankle links appear during development of the auditory hair bundle.


show annotations for term's descendants           Sort by:
stereocilia ankle link term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 located_in ISO (PMID:16775142), (PMID:20502675), (PMID:24334608), (PMID:26401052) RGD PMID:16775142 PMID:20502675 PMID:24334608 PMID:26401052 NCBI chr 2:13,067,149...13,647,407
Ensembl chr 2:11,331,442...11,911,688 		JBrowse link
G Pdzd7 PDZ domain containing 7 located_in ISO
IEA		 (PMID:24334608), (PMID:26401052), (PMID:27525485)
GO_REF:0000107		 RGD
Ensembl		 PMID:24334608 PMID:26401052 PMID:27525485 GO_REF:0000107 NCBI chr 1:253,837,454...253,856,919
Ensembl chr 1:243,888,281...243,906,839 		JBrowse link
G Ush2a usherin part_of
located_in		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:20502675), (PMID:24334608), (PMID:26401052)		 UniProt
Ensembl
RGD		 PMID:20502675 PMID:24334608 PMID:26401052 GO_REF:0000024 GO_REF:0000107 NCBI chr13:102,368,783...103,035,230
Ensembl chr13:99,837,445...100,503,922 		JBrowse link
G Whrn whirlin located_in IDA
IEA
ISO
ISS		 PMID:23055499
GO_REF:0000107
(PMID:20502675), (PMID:24334608), (PMID:26401052)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:20502675 PMID:24334608 PMID:26401052 PMID:23055499 GO_REF:0000024 GO_REF:0000107, RGD:13800540 NCBI chr 5:81,843,820...81,933,400
Ensembl chr 5:76,828,301...76,912,223 		JBrowse link
stereocilia ankle link complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 part_of ISO (PMID:17567809) RGD PMID:17567809 NCBI chr 2:13,067,149...13,647,407
Ensembl chr 2:11,331,442...11,911,688 		JBrowse link
G Pdzd7 PDZ domain containing 7 part_of IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:27525485)		 GO_Central
Ensembl
RGD		 PMID:27525485 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:253,837,454...253,856,919
Ensembl chr 1:243,888,281...243,906,839 		JBrowse link
G Ush1c USH1 protein network component harmonin part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:105,831,719...105,880,082
Ensembl chr 1:96,695,307...96,743,671 		JBrowse link
G Ush2a usherin part_of ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:17567809)		 UniProt
Ensembl
RGD		 PMID:17567809 GO_REF:0000024 GO_REF:0000107 NCBI chr13:102,368,783...103,035,230
Ensembl chr13:99,837,445...100,503,922 		JBrowse link
G Vezt vezatin, adherens junctions transmembrane protein part_of ISS
ISO		 GO_REF:0000024
(PMID:17567809)		 UniProt
RGD		 PMID:17567809 GO_REF:0000024 NCBI chr 7:30,399,208...30,484,429
Ensembl chr 7:28,534,249...28,597,356 		JBrowse link
G Whrn whirlin part_of ISS
ISO
IBA
IEA		 GO_REF:0000024
(PMID:17567809)
GO_REF:0000033
GO_REF:0000107		 UniProt
RGD
GO_Central
Ensembl		 PMID:17567809 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:81,843,820...81,933,400
Ensembl chr 5:76,828,301...76,912,223 		JBrowse link
stereocilia tip-link density term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Diaph3 diaphanous-related formin 3 is_active_in ISO
IEA		 (PMID:23441200)
GO_REF:0000107		 RGD
Ensembl		 PMID:23441200 GO_REF:0000107 NCBI chr15:68,951,992...69,421,623
Ensembl chr15:62,543,375...63,012,975 		JBrowse link
upper tip-link density term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo7a myosin VIIA IDA RGD PMID:21709241 RGD:8699498 NCBI chr 1:161,755,110...161,825,397
Ensembl chr 1:152,344,448...152,414,157 		JBrowse link
G Ush1c USH1 protein network component harmonin located_in ISO (PMID:31448880) RGD PMID:31448880 NCBI chr 1:105,831,719...105,880,082
Ensembl chr 1:96,695,307...96,743,671 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21364
    cellular anatomical structure 21069
      stereocilia coupling link 8
        stereocilia ankle link + 6
        stereocilia tip link + 3
Path 2
Term Annotations click to browse term
  cellular_component 21364
    cellular anatomical structure 21069
      cluster of actin-based cell projections 220
        stereocilium bundle 79
          stereocilia coupling link 8
            stereocilia ankle link + 6
            stereocilia tip link + 3
paths to the root