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ONTOLOGY REPORT - ANNOTATIONS


Term:stereocilia coupling link
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Accession:GO:0002139 term browser browse the term
Definition:A structure involved in coupling stereocilia to one another in sensory hair cells There are four morphologically distinct types: tip links, horizontal top connectors, shaft connectors and ankle links. Tip links and horizontal top connectors are the only inter-stereocilia links associated with mature cochlea, whereas ankle links appear during development of the auditory hair bundle.


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stereocilia ankle link term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 ISO (MGI:3629345|PMID:16775142), (MGI:3718182|PMID:17295842), (MGI:4454934|PMID:20502675), (MGI:5565635|PMID:24334608) RGD PMID:16775142, PMID:17295842, PMID:20502675, PMID:24334608 MGI:3629345, MGI:3718182, MGI:4454934, MGI:5565635 NCBI chr 2:8,926,843...9,504,455
Ensembl chr 2:8,926,850...9,504,134
JBrowse link
G Pdzd7 PDZ domain containing 7 IBA
ISO
PMID:21873635
(MGI:5565635|PMID:24334608), (MGI:5806014|PMID:27525485)
RGD PMID:24334608, PMID:27525485, PMID:21873635 MGI:5565635, MGI:5806014, RGD:13792537 NCBI chr 1:264,776,393...264,796,206
Ensembl chr 1:264,776,398...264,794,938
JBrowse link
G Ush1c USH1 protein network component harmonin IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:102,207,096...102,256,779
Ensembl chr 1:102,207,096...102,255,459
JBrowse link
G Ush2a usherin ISS
ISO
GO_REF:0000024
(MGI:4454934|PMID:20502675), (MGI:5565635|PMID:24334608)
UniProt
RGD
PMID:20502675, PMID:24334608 GO_REF:0000024, MGI:4454934, MGI:5565635 NCBI chr13:106,750,738...107,434,195
Ensembl chr13:106,751,625...107,427,329
JBrowse link
G Whrn whirlin ISS
ISO
IBA
IDA
GO_REF:0000024
(MGI:4454934|PMID:20502675), (MGI:5565635|PMID:24334608)
PMID:21873635
PMID:23055499
UniProt
RGD
PMID:20502675, PMID:24334608, PMID:21873635, PMID:23055499 GO_REF:0000024, MGI:4454934, MGI:5565635, RGD:13792537, RGD:13800540 NCBI chr 5:79,235,541...79,317,206
Ensembl chr 5:79,234,950...79,317,206
JBrowse link
stereocilia ankle link complex term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 ISO (MGI:3714249|PMID:17567809) RGD PMID:17567809 MGI:3714249 NCBI chr 2:8,926,843...9,504,455
Ensembl chr 2:8,926,850...9,504,134
JBrowse link
G Pdzd7 PDZ domain containing 7 IBA
ISO
PMID:21873635
(MGI:5806014|PMID:27525485)
RGD PMID:27525485, PMID:21873635 MGI:5806014, RGD:13792537 NCBI chr 1:264,776,393...264,796,206
Ensembl chr 1:264,776,398...264,794,938
JBrowse link
G Ush1c USH1 protein network component harmonin IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:102,207,096...102,256,779
Ensembl chr 1:102,207,096...102,255,459
JBrowse link
G Ush2a usherin ISS
ISO
GO_REF:0000024
(MGI:3714249|PMID:17567809)
UniProt
RGD
PMID:17567809 GO_REF:0000024, MGI:3714249 NCBI chr13:106,750,738...107,434,195
Ensembl chr13:106,751,625...107,427,329
JBrowse link
G Vezt vezatin, adherens junctions transmembrane protein ISS
ISO
GO_REF:0000024
(MGI:3714249|PMID:17567809)
UniProt
RGD
PMID:17567809 GO_REF:0000024, MGI:3714249 NCBI chr 7:34,888,487...34,951,712
Ensembl chr 7:34,888,491...34,951,644
JBrowse link
G Whrn whirlin IEA
ISO
ISS
IBA
GO_REF:0000107
(MGI:3714249|PMID:17567809)
GO_REF:0000024
PMID:21873635
Ensembl
RGD
UniProt
PMID:17567809, PMID:21873635 GO_REF:0000024, GO_REF:0000107, MGI:3714249, RGD:13792537 NCBI chr 5:79,235,541...79,317,206
Ensembl chr 5:79,234,950...79,317,206
JBrowse link
upper tip-link density term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo7a myosin VIIA IDA RGD PMID:21709241 RGD:8699498 NCBI chr 1:163,001,313...163,071,545
Ensembl chr 1:163,001,875...163,071,508
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20602
    cellular anatomical entity 20292
      stereocilia coupling link 7
        stereocilia ankle link + 6
        stereocilia tip link + 1
Path 2
Term Annotations click to browse term
  cellular_component 20602
    cellular anatomical entity 20292
      cluster of actin-based cell projections 203
        stereocilium bundle 71
          stereocilia coupling link 7
            stereocilia ankle link + 6
            stereocilia tip link + 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.