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ONTOLOGY REPORT - ANNOTATIONS


Term:stereocilia coupling link
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Accession:GO:0002139 term browser browse the term
Definition:A structure involved in coupling stereocilia to one another in sensory hair cells There are four morphologically distinct types: tip links, horizontal top connectors, shaft connectors and ankle links. Tip links and horizontal top connectors are the only inter-stereocilia links associated with mature cochlea, whereas ankle links appear during development of the auditory hair bundle.



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stereocilia ankle link term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 located_in ISO (MGI:3629345|PMID:16775142), (MGI:4454934|PMID:20502675), (MGI:5698752|PMID:26401052), (PMID:24334608) RGD PMID:16775142 PMID:20502675 PMID:24334608 PMID:26401052 MGI:3629345 MGI:4454934 MGI:5698752 NCBI chr 2:11,331,434...11,911,713
Ensembl chr 2:11,331,442...11,911,688
JBrowse link
G Pdzd7 PDZ domain containing 7 located_in ISO (MGI:5698752|PMID:26401052), (MGI:5806014|PMID:27525485), (PMID:24334608) RGD PMID:24334608 PMID:26401052 PMID:27525485 MGI:5698752 MGI:5806014 NCBI chr 1:243,888,295...243,907,778
Ensembl chr 1:243,888,281...243,906,839
JBrowse link
G Ush2a usherin part_of
located_in
ISS
ISO
GO_REF:0000024
(MGI:4454934|PMID:20502675), (MGI:5698752|PMID:26401052), (PMID:24334608)
UniProt
RGD
PMID:20502675 PMID:24334608 PMID:26401052 GO_REF:0000024 MGI:4454934 MGI:5698752 NCBI chr13:99,837,445...100,503,935
Ensembl chr13:99,837,445...100,503,922
JBrowse link
G Whrn whirlin located_in IDA
ISO
ISS
PMID:23055499
(MGI:4454934|PMID:20502675), (MGI:5698752|PMID:26401052), (PMID:24334608)
GO_REF:0000024
RGD
UniProt
PMID:20502675 PMID:24334608 PMID:26401052 PMID:23055499 GO_REF:0000024 MGI:4454934 MGI:5698752, RGD:13800540 NCBI chr 5:76,828,308...76,911,945
Ensembl chr 5:76,828,301...76,912,223
JBrowse link
stereocilia ankle link complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 part_of ISO (PMID:17567809) RGD PMID:17567809 NCBI chr 2:11,331,434...11,911,713
Ensembl chr 2:11,331,442...11,911,688
JBrowse link
G Pdzd7 PDZ domain containing 7 part_of ISO
IBA
(MGI:5806014|PMID:27525485)
GO_REF:0000033
RGD
GO_Central
PMID:27525485 GO_REF:0000033 MGI:5806014 NCBI chr 1:243,888,295...243,907,778
Ensembl chr 1:243,888,281...243,906,839
JBrowse link
G Ush1c USH1 protein network component harmonin part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:96,695,303...96,743,671
Ensembl chr 1:96,695,307...96,743,671
JBrowse link
G Ush2a usherin part_of ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:17567809)
UniProt
Ensembl
RGD
PMID:17567809 GO_REF:0000024 GO_REF:0000107 NCBI chr13:99,837,445...100,503,935
Ensembl chr13:99,837,445...100,503,922
JBrowse link
G Vezt vezatin, adherens junctions transmembrane protein part_of ISS
ISO
GO_REF:0000024
(PMID:17567809)
UniProt
RGD
PMID:17567809 GO_REF:0000024 NCBI chr 7:28,512,214...28,597,429
Ensembl chr 7:28,534,249...28,597,356
JBrowse link
G Whrn whirlin part_of ISS
ISO
IBA
IEA
GO_REF:0000024
(PMID:17567809)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107
UniProt
RGD
GO_Central
TreeGrafter
Ensembl
PMID:17567809 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:76,828,308...76,911,945
Ensembl chr 5:76,828,301...76,912,223
JBrowse link
stereocilia tip-link density term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Diaph3 diaphanous-related formin 3 located_in
is_active_in
IEA
ISO
GO_REF:0000107
(PMID:23441200)
Ensembl
RGD
PMID:23441200 GO_REF:0000107 NCBI chr15:62,543,375...63,013,060
Ensembl chr15:62,543,375...63,012,975
JBrowse link
upper tip-link density term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo7a myosin VIIA IDA RGD PMID:21709241 RGD:8699498 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
JBrowse link
G Ush1c USH1 protein network component harmonin located_in ISO (PMID:31448880) RGD PMID:31448880 NCBI chr 1:96,695,303...96,743,671
Ensembl chr 1:96,695,307...96,743,671
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21254
    cellular anatomical entity 21098
      stereocilia coupling link 8
        stereocilia ankle link + 6
        stereocilia tip link + 3
Path 2
Term Annotations click to browse term
  cellular_component 21254
    cellular anatomical entity 21098
      cluster of actin-based cell projections 212
        stereocilium bundle 75
          stereocilia coupling link 8
            stereocilia ankle link + 6
            stereocilia tip link + 3
paths to the root