Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:stereocilia coupling link
go back to main search page
Accession:GO:0002139 term browser browse the term
Definition:A structure involved in coupling stereocilia to one another in sensory hair cells There are four morphologically distinct types: tip links, horizontal top connectors, shaft connectors and ankle links. Tip links and horizontal top connectors are the only inter-stereocilia links associated with mature cochlea, whereas ankle links appear during development of the auditory hair bundle.

show annotations for term's descendants           Sort by:
 
stereocilia ankle link term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 ISO (MGI:3629345|PMID:16775142), (MGI:3718182|PMID:17295842), (MGI:4454934|PMID:20502675), (MGI:5565635|PMID:24334608) RGD PMID:16775142, PMID:17295842, PMID:20502675, PMID:24334608 MGI:3629345, MGI:3718182, MGI:4454934, MGI:5565635 NCBI chr 2:8,926,843...9,504,455
Ensembl chr 2:8,926,850...9,504,134 		JBrowse link
G Pdzd7 PDZ domain containing 7 IBA
ISO		 PMID:21873635
(MGI:5565635|PMID:24334608), (MGI:5806014|PMID:27525485)		 RGD PMID:24334608, PMID:27525485, PMID:21873635 MGI:5565635, MGI:5806014, RGD:13792537 NCBI chr 1:264,776,393...264,796,206
Ensembl chr 1:264,776,398...264,794,938 		JBrowse link
G Ush1c USH1 protein network component harmonin IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:102,207,096...102,256,779
Ensembl chr 1:102,207,096...102,255,459 		JBrowse link
G Ush2a usherin ISS
ISO		 GO_REF:0000024
(MGI:4454934|PMID:20502675), (MGI:5565635|PMID:24334608)		 UniProt
RGD		 PMID:20502675, PMID:24334608 GO_REF:0000024, MGI:4454934, MGI:5565635 NCBI chr13:106,750,738...107,434,195
Ensembl chr13:106,751,625...107,427,329 		JBrowse link
G Whrn whirlin ISS
ISO
IBA
IDA		 GO_REF:0000024
(MGI:4454934|PMID:20502675), (MGI:5565635|PMID:24334608)
PMID:21873635
PMID:23055499		 UniProt
RGD		 PMID:20502675, PMID:24334608, PMID:21873635, PMID:23055499 GO_REF:0000024, MGI:4454934, MGI:5565635, RGD:13792537, RGD:13800540 NCBI chr 5:79,235,541...79,317,206
Ensembl chr 5:79,234,950...79,317,206 		JBrowse link
stereocilia ankle link complex term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 ISO (MGI:3714249|PMID:17567809) RGD PMID:17567809 MGI:3714249 NCBI chr 2:8,926,843...9,504,455
Ensembl chr 2:8,926,850...9,504,134 		JBrowse link
G Pdzd7 PDZ domain containing 7 IBA
ISO		 PMID:21873635
(MGI:5806014|PMID:27525485)		 RGD PMID:27525485, PMID:21873635 MGI:5806014, RGD:13792537 NCBI chr 1:264,776,393...264,796,206
Ensembl chr 1:264,776,398...264,794,938 		JBrowse link
G Ush1c USH1 protein network component harmonin IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:102,207,096...102,256,779
Ensembl chr 1:102,207,096...102,255,459 		JBrowse link
G Ush2a usherin ISS
ISO		 GO_REF:0000024
(MGI:3714249|PMID:17567809)		 UniProt
RGD		 PMID:17567809 GO_REF:0000024, MGI:3714249 NCBI chr13:106,750,738...107,434,195
Ensembl chr13:106,751,625...107,427,329 		JBrowse link
G Vezt vezatin, adherens junctions transmembrane protein ISS
ISO		 GO_REF:0000024
(MGI:3714249|PMID:17567809)		 UniProt
RGD		 PMID:17567809 GO_REF:0000024, MGI:3714249 NCBI chr 7:34,888,487...34,951,712
Ensembl chr 7:34,888,491...34,951,644 		JBrowse link
G Whrn whirlin IEA
ISO
ISS
IBA		 GO_REF:0000107
(MGI:3714249|PMID:17567809)
GO_REF:0000024
PMID:21873635		 Ensembl
RGD
UniProt		 PMID:17567809, PMID:21873635 GO_REF:0000024, GO_REF:0000107, MGI:3714249, RGD:13792537 NCBI chr 5:79,235,541...79,317,206
Ensembl chr 5:79,234,950...79,317,206 		JBrowse link
upper tip-link density term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo7a myosin VIIA IDA RGD PMID:21709241 RGD:8699498 NCBI chr 1:163,001,313...163,071,545
Ensembl chr 1:163,001,875...163,071,508 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20602
    cellular anatomical entity 20292
      stereocilia coupling link 7
        stereocilia ankle link + 6
        stereocilia tip link + 1
Path 2
Term Annotations click to browse term
  cellular_component 20602
    cellular anatomical entity 20292
      cluster of actin-based cell projections 203
        stereocilium bundle 71
          stereocilia coupling link 7
            stereocilia ankle link + 6
            stereocilia tip link + 1
paths to the root

Contact Us |  About Us |  License CC BY 4.0 |  Legal Disclaimer |  © Medical College of Wisconsin
NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.