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ONTOLOGY REPORT - ANNOTATIONS


Term:columnar/cuboidal epithelial cell differentiation
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Accession:GO:0002065 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires specialized features of a columnar/cuboidal epithelial cell. A columnar/cuboidal epithelial cell is a cell usually found in a two dimensional sheet with a free surface. Columnar/cuboidal epithelial cells take on the shape of a column or cube.


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acinar cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prox1 prospero homeobox 1 acts_upstream_of_or_within ISO MGI:3609548 (MGI:5317511|PMID:22178591) RGD PMID:22178591 MGI:5317511 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
adrenal chromaffin cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:1857470 (MGI:2387977|PMID:12361965) RGD PMID:12361965 MGI:2387977 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
G Insm1 INSM transcriptional repressor 1 involved_in ISO (MGI:3772428|PMID:18094025) RGD PMID:18094025 MGI:3772428 NCBI chr 3:140,427,961...140,430,467 JBrowse link
ameloblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within ISO MGI:2653208 (MGI:5912858|PMID:25027178) RGD PMID:25027178 MGI:5912858 NCBI chr14:6,926,972...6,933,079
Ensembl chr14:6,926,976...6,933,070
JBrowse link
G Enam enamelin involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:3796583 (MGI:5647983|PMID:24603688)
RGD PMID:24603688, PMID:21873635 MGI:5647983, RGD:13792537 NCBI chr14:21,194,635...21,219,529
Ensembl chr14:21,194,664...21,219,454
JBrowse link
carotid body glomus cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:1857470 (MGI:3581993|PMID:15878769) RGD PMID:15878769 MGI:3581993 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
columnar/cuboidal epithelial cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ros1 ROS proto-oncogene 1 , receptor tyrosine kinase involved_in ISS
ISO
GO_REF:0000024
(MGI:80739|PMID:8675006)
UniProt
RGD
PMID:8675006 GO_REF:0000024 MGI:80739 NCBI chr20:33,100,190...33,323,544
Ensembl chr20:33,100,191...33,323,367
JBrowse link
G Shroom3 shroom family member 3 acts_upstream_of_or_within ISO (MGI:3610718|PMID:16249236) RGD PMID:16249236 MGI:3610718 NCBI chr14:16,622,767...16,903,265
Ensembl chr14:16,622,760...16,903,242
JBrowse link
columnar/cuboidal epithelial cell maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within ISO (MGI:6443509|PMID:31336344) RGD PMID:31336344 MGI:6443509 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
enteroendocrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Neurod1 neuronal differentiation 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:1096974|PMID:9308961)
UniProt
RGD
PMID:9308961 GO_REF:0000024 MGI:1096974 NCBI chr 3:66,414,314...66,417,617
Ensembl chr 3:66,414,308...66,417,741
JBrowse link
G Percc1 proline and glutamate rich with coiled coil 1 involved_in ISO (MGI:6368375|PMID:31217582) RGD PMID:31217582 MGI:6368375 NCBI chr10:14,529,231...14,531,682 JBrowse link
G Rbm4 RNA binding motif protein 4 acts_upstream_of_or_within ISO MGI:5467987|MGI:5467988 (MGI:5466631|PMID:23129807) RGD PMID:23129807 MGI:5466631 NCBI chr 1:220,038,403...220,049,756
Ensembl chr 1:220,039,734...220,048,966
JBrowse link
glandular epithelial cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fasn fatty acid synthase acts_upstream_of_or_within ISO MGI:3765070 (MGI:5630041|PMID:25565205) RGD PMID:25565205 MGI:5630041 NCBI chr10:109,987,735...110,005,901
Ensembl chr10:109,987,735...110,005,901
JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO MGI:97858 (MGI:69060|PMID:7607067) RGD PMID:7607067 MGI:69060 NCBI chr10:86,838,819...86,884,224
Ensembl chr10:86,860,685...86,884,210
JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within ISO MGI:97858 (MGI:69060|PMID:7607067) RGD PMID:7607067 MGI:69060 NCBI chr15:9,915,223...10,262,599
Ensembl chr15:10,120,206...10,262,599
JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO MGI:97856|MGI:97857 (MGI:69060|PMID:7607067) RGD PMID:7607067 MGI:69060 NCBI chr 7:143,840,739...143,863,206
Ensembl chr 7:143,839,980...143,863,186
JBrowse link
glandular epithelial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (MGI:6160687|PMID:29700203) RGD PMID:29700203 MGI:6160687 NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068
JBrowse link
G Il31ra interleukin 31 receptor A acts_upstream_of_or_within ISO MGI:3717594 (MGI:3844143|PMID:19414760) RGD PMID:19414760 MGI:3844143 NCBI chr 2:44,333,347...44,408,005
Ensembl chr 2:44,336,006...44,394,709
JBrowse link
G Nkx6-3 NK6 homeobox 3 acts_upstream_of_or_within ISO MGI:3795186 (MGI:3795066|PMID:18347062) RGD PMID:18347062 MGI:3795066 NCBI chr16:73,665,269...73,670,482
Ensembl chr16:73,665,269...73,670,482
JBrowse link
glandular epithelial cell maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpat4 glycerol-3-phosphate acyltransferase 4 acts_upstream_of_or_within ISO MGI:3624276 (MGI:3623167|PMID:16449762) RGD PMID:16449762 MGI:3623167 NCBI chr16:73,615,949...73,649,769
Ensembl chr16:73,615,949...73,649,767
JBrowse link
inhibition of neuroepithelial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO MGI:2180793 (MGI:3640721|PMID:16678814) RGD PMID:16678814 MGI:3640721 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
intestinal epithelial cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1galt1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3714051 (MGI:5002772|PMID:21383503)
Ensembl
RGD
PMID:21383503 GO_REF:0000107 MGI:5002772 NCBI chr 4:33,890,353...33,943,219
Ensembl chr 4:33,890,349...33,943,211
JBrowse link
G Cdh1 cadherin 1 acts_upstream_of_or_within ISO (MGI:5449145|PMID:22766025) RGD PMID:22766025 MGI:5449145 NCBI chr19:38,768,467...38,838,395
Ensembl chr19:38,768,467...38,838,395
JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:108015 (MGI:4946569|PMID:21307095) RGD PMID:21307095 MGI:4946569 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Il6st interleukin 6 cytokine family signal transducer involved_in IEA
ISO
GO_REF:0000107
(MGI:5629863|PMID:25731159)
(PMID:25731159)
Ensembl
RGD
PMID:25731159 GO_REF:0000107 MGI:5629863 NCBI chr 2:44,279,199...44,319,427
Ensembl chr 2:44,289,393...44,314,944
JBrowse link
G Klf5 Kruppel-like factor 5 acts_upstream_of_or_within ISO MGI:3806635 (MGI:5471906|PMID:23266329) RGD PMID:23266329 MGI:5471906 NCBI chr15:83,703,796...83,722,921
Ensembl chr15:83,703,791...83,722,921
JBrowse link
G Mir3545 microRNA 3545 acts_upstream_of_or_within ISO (MGI:4946569|PMID:21307095) RGD PMID:21307095 MGI:4946569 NCBI chr 6:136,704,947...136,705,061
Ensembl chr 6:136,704,947...136,705,061
JBrowse link
G Mir7-1 microRNA 7-1 acts_upstream_of_or_within ISO (MGI:4946569|PMID:21307095) RGD PMID:21307095 MGI:4946569 NCBI chr17:6,675,016...6,675,112
Ensembl chr17:6,675,016...6,675,112
JBrowse link
G Nkx3-2 NK3 homeobox 2 acts_upstream_of_or_within ISO MGI:2177178 (MGI:4946569|PMID:21307095) RGD PMID:21307095 MGI:4946569 NCBI chr14:73,813,531...73,818,489
Ensembl chr14:73,813,528...73,815,757
JBrowse link
G Prdm1 PR/SET domain 1 acts_upstream_of_or_within ISO MGI:3605483|MGI:3605621 (MGI:5014435|PMID:21670299) RGD PMID:21670299 MGI:5014435 NCBI chr20:49,464,921...49,556,623
Ensembl chr20:49,464,919...49,556,518
JBrowse link
G Spdef SAM pointed domain containing ets transcription factor acts_upstream_of_or_within ISO MGI:4410321 (MGI:4410300|PMID:19549527) RGD PMID:19549527 MGI:4410300 NCBI chr20:7,292,823...7,308,053
Ensembl chr20:7,292,824...7,307,284
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase involved_in ISO (PMID:25731159)
(MGI:5629863|PMID:25731159)
RGD PMID:25731159 MGI:5629863 NCBI chr 3:153,547,807...153,595,643
Ensembl chr 3:153,580,861...153,595,642
JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase acts_upstream_of_or_within ISO MGI:4391656 (MGI:5498602|PMID:23726973) RGD PMID:23726973 MGI:5498602 NCBI chr 4:159,635,145...159,654,108
Ensembl chr 4:159,635,153...159,654,063
JBrowse link
G Yap1 Yes1 associated transcriptional regulator involved_in ISO (PMID:25731159)
(MGI:5629863|PMID:25731159)
RGD PMID:25731159 MGI:5629863 NCBI chr 8:6,133,014...6,204,240
Ensembl chr 8:6,135,493...6,203,579
JBrowse link
G Yipf6 Yip1 domain family, member 6 acts_upstream_of_or_within ISO MGI:4839074 (MGI:5437477|PMID:22802641) RGD PMID:22802641 MGI:5437477 NCBI chr  X:68,625,760...68,637,780
Ensembl chr  X:68,626,185...68,637,416
JBrowse link
intestinal epithelial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbfa2t2 CBFA2/RUNX1 partner transcriptional co-repressor 2 involved_in ISO (MGI:5629454|PMID:25398765) RGD PMID:25398765 MGI:5629454 NCBI chr 3:149,935,731...150,041,545
Ensembl chr 3:149,935,731...150,038,257
JBrowse link
G Cdx2 caudal type homeo box 2 involved_in ISO (MGI:5301472|PMID:22015720) RGD PMID:22015720 MGI:5301472 NCBI chr12:9,464,026...9,470,565
Ensembl chr12:9,464,026...9,470,565
JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:9566909) RGD PMID:9566909 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
JBrowse link
G Gata5 GATA binding protein 5 acts_upstream_of_or_within ISO (PMID:9566909) RGD PMID:9566909 NCBI chr 3:175,701,278...175,709,465
Ensembl chr 3:175,701,280...175,709,465
JBrowse link
G Gata6 GATA binding protein 6 acts_upstream_of_or_within ISO (PMID:9566909) RGD PMID:9566909 NCBI chr18:2,415,821...2,447,087
Ensembl chr18:2,416,552...2,446,338
JBrowse link
G Ptk6 protein tyrosine kinase 6 involved_in ISO (MGI:3640030|PMID:16782882) RGD PMID:16782882 MGI:3640030 NCBI chr 3:176,698,305...176,706,896
Ensembl chr 3:176,698,305...176,706,896
JBrowse link
G Sav1 salvador family WW domain containing protein 1 acts_upstream_of_or_within ISO MGI:3790763 (MGI:3785211|PMID:18369314) RGD PMID:18369314 MGI:3785211 NCBI chr 6:92,376,470...92,398,678
Ensembl chr 6:92,376,093...92,398,525
JBrowse link
intestinal epithelial cell maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1a cyclin-dependent kinase inhibitor 1A IEP RGD PMID:20466941 RGD:8662316 NCBI chr20:6,348,422...6,358,864
Ensembl chr20:6,351,458...6,358,864
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2384429 (MGI:4830408|PMID:20808783)
Ensembl
RGD
PMID:20808783 GO_REF:0000107 MGI:4830408 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
JBrowse link
G Hoxa5 homeo box A5 acts_upstream_of_or_within ISO MGI:2150397 (MGI:1349338|PMID:10564089) RGD PMID:10564089 MGI:1349338 NCBI chr 4:82,170,383...82,174,788
Ensembl chr 4:82,170,387...82,173,207
JBrowse link
G Tyms thymidylate synthetase IEP RGD PMID:1260861 RGD:2317427 NCBI chr 9:121,918,875...121,931,564
Ensembl chr 9:121,918,947...121,931,564
JBrowse link
lung goblet cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agr2 anterior gradient 2, protein disulphide isomerase family member acts_upstream_of_or_within ISO (MGI:5429471|PMID:22675208) RGD PMID:22675208 MGI:5429471 NCBI chr 6:55,465,782...55,487,087
Ensembl chr 6:55,465,782...55,487,714
JBrowse link
G Hoxa5 homeo box A5 acts_upstream_of_or_within ISO MGI:2150397 (MGI:3665532|PMID:17003488) RGD PMID:17003488 MGI:3665532 NCBI chr 4:82,170,383...82,174,788
Ensembl chr 4:82,170,387...82,173,207
JBrowse link
G Spdef SAM pointed domain containing ets transcription factor acts_upstream_of_or_within ISO (MGI:3709719|PMID:17347682) RGD PMID:17347682 MGI:3709719 NCBI chr20:7,292,823...7,308,053
Ensembl chr20:7,292,824...7,307,284
JBrowse link
lung neuroendocrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:1857470 (MGI:3664178|PMID:9126746) RGD PMID:9126746 MGI:3664178 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
negative regulation of lung goblet cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp1 forkhead box P1 acts_upstream_of_or_within ISO MGI:1921373 (MGI:5429471|PMID:22675208) RGD PMID:22675208 MGI:5429471 NCBI chr 4:131,362,178...131,963,466
Ensembl chr 4:131,366,744...131,694,755
JBrowse link
G Foxp4 forkhead box P4 acts_upstream_of_or_within ISO MGI:1914004 (MGI:5429471|PMID:22675208) RGD PMID:22675208 MGI:5429471 NCBI chr 9:15,068,378...15,124,962
Ensembl chr 9:15,068,399...15,125,318
JBrowse link
negative regulation of pancreatic A cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2149672 (MGI:1351379|PMID:10615124)
Ensembl
RGD
PMID:10615124 GO_REF:0000107 MGI:1351379 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248
JBrowse link
G Mir7-1 microRNA 7-1 acts_upstream_of_or_within ISO (MGI:5437569|PMID:22764048) RGD PMID:22764048 MGI:5437569 NCBI chr17:6,675,016...6,675,112
Ensembl chr17:6,675,016...6,675,112
JBrowse link
negative regulation of stomach neuroendocrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2149672 (MGI:3804618|PMID:18173746)
Ensembl
RGD
PMID:18173746 GO_REF:0000107 MGI:3804618 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248
JBrowse link
negative regulation of type B pancreatic cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cftr CF transmembrane conductance regulator IMP RGD PMID:23178930 RGD:11567224 NCBI chr 4:42,693,263...42,860,679
Ensembl chr 4:42,692,836...42,860,676
JBrowse link
neuroendocrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bccip BRCA2 and CDKN1A interacting protein involved_in ISO (PMID:18440304) RGD PMID:18440304 NCBI chr 1:205,777,474...205,789,887
Ensembl chr 1:205,777,130...205,790,175
JBrowse link
G Wnt11 Wnt family member 11 involved_in ISO (PMID:20219091) RGD PMID:20219091 NCBI chr 1:163,794,136...163,813,756
Ensembl chr 1:163,797,660...163,813,756
JBrowse link
neuroepithelial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:87860 (MGI:1327082|PMID:9883720) RGD PMID:9883720 MGI:1327082 NCBI chr 3:10,041,820...10,145,076
Ensembl chr 3:10,041,826...10,144,388
Ensembl chr 3:10,041,826...10,144,388
JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:87859 (MGI:1327082|PMID:9883720) RGD PMID:9883720 MGI:1327082 NCBI chr13:74,154,533...74,333,244
Ensembl chr13:74,154,835...74,333,244
JBrowse link
G Afdn afadin, adherens junction formation factor acts_upstream_of_or_within ISO MGI:95387 (MGI:5605648|PMID:25100583) RGD PMID:25100583 MGI:5605648 NCBI chr 1:53,713,873...53,861,918
Ensembl chr 1:53,715,693...53,802,658
JBrowse link
G B9d1 B9 domain containing 1 acts_upstream_of_or_within ISO MGI:5301332 (MGI:5300833|PMID:22179047) RGD PMID:22179047 MGI:5300833 NCBI chr10:47,784,294...47,794,399
Ensembl chr10:47,785,033...47,792,590
Ensembl chr10:47,785,033...47,792,590
JBrowse link
G Cdh2 cadherin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:95387 (MGI:5605648|PMID:25100583)
Ensembl
RGD
PMID:25100583 GO_REF:0000107 MGI:5605648 NCBI chr18:8,146,971...8,366,037
Ensembl chr18:8,146,971...8,360,684
JBrowse link
G Emx1 empty spiracles homeobox 1 acts_upstream_of_or_within ISO MGI:1314653|MGI:88355 (MGI:5605648|PMID:25100583) RGD PMID:25100583 MGI:5605648 NCBI chr 4:116,967,646...116,984,136
Ensembl chr 4:116,968,000...116,985,551
JBrowse link
G Fgf8 fibroblast growth factor 8 involved_in ISO (PMID:17309880) RGD PMID:17309880 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
G Kdm2a lysine demethylase 2A acts_upstream_of_or_within ISO (MGI:5615026|PMID:25463925) RGD PMID:25463925 MGI:5615026 NCBI chr 1:219,566,130...219,642,294
Ensembl chr 1:219,566,156...219,640,294
JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
ISO
GO_REF:0000024
(MGI:4838379|PMID:20646169)
UniProt
RGD
PMID:20646169 GO_REF:0000024 MGI:4838379 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
G Sox4 SRY-box transcription factor 4 involved_in ISO (MGI:4838379|PMID:20646169) RGD PMID:20646169 MGI:4838379 NCBI chr17:37,615,022...37,619,728 JBrowse link
G Tmem231 transmembrane protein 231 acts_upstream_of_or_within ISO MGI:4284576 (MGI:5300833|PMID:22179047) RGD PMID:22179047 MGI:5300833 NCBI chr19:44,137,444...44,158,624
Ensembl chr19:44,137,423...44,158,624
JBrowse link
odontoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx3 distal-less homeobox 3 acts_upstream_of_or_within ISO MGI:2386570|MGI:3813133 (MGI:5320683|PMID:22351765) RGD PMID:22351765 MGI:5320683 NCBI chr10:82,937,971...82,943,367
Ensembl chr10:82,937,971...82,943,348
JBrowse link
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within
involved_in
IEP
ISO
IBA
MGI:2653208 (MGI:5912858|PMID:25027178)
PMID:21873635
RGD PMID:25027178, PMID:15763925, PMID:21873635 MGI:5912858, RGD:12911014, RGD:13792537 NCBI chr14:6,926,972...6,933,079
Ensembl chr14:6,926,976...6,933,070
JBrowse link
G Fam20c FAM20C, golgi associated secretory pathway kinase acts_upstream_of_or_within IEP
ISO
(MGI:3715055|PMID:17369251) RGD PMID:17369251, PMID:17369251 MGI:3715055, RGD:11560522 NCBI chr12:17,913,771...17,972,733
Ensembl chr12:17,913,767...17,972,737
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 IMP RGD PMID:20425127 RGD:4110819 NCBI chr 2:236,232,115...236,345,061
Ensembl chr 2:236,233,239...236,345,056
JBrowse link
pancreatic A cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax6 paired box 6 involved_in IMP
IEA
ISO
PMID:20592023
GO_REF:0000107
(MGI:4943812|PMID:20592023)
(PMID:20592023)
Ensembl
RGD
PMID:20592023, PMID:20592023 GO_REF:0000107 MGI:4943812, RGD:8552352 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
pancreatic A cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata6 GATA binding protein 6 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3701716|PMID:16887115)
Ensembl
RGD
PMID:16887115 GO_REF:0000107 MGI:3701716 NCBI chr18:2,415,821...2,447,087
Ensembl chr18:2,416,552...2,446,338
JBrowse link
G Insm1 INSM transcriptional repressor 1 involved_in ISO (MGI:3619850|PMID:16511571) RGD PMID:16511571 MGI:3619850 NCBI chr 3:140,427,961...140,430,467 JBrowse link
G Pax6 paired box 6 IMP RGD PMID:20592023 RGD:8552352 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Rfx6 regulatory factor X, 6 involved_in ISO (MGI:4422104|PMID:20148032) RGD PMID:20148032 MGI:4422104 NCBI chr20:32,709,282...32,764,040
Ensembl chr20:32,717,564...32,764,035
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO MGI:2136645|MGI:3608931 (MGI:5618205|PMID:25186293) RGD PMID:25186293 MGI:5618205 NCBI chr 4:145,580,869...145,587,835
Ensembl chr 4:145,580,799...145,587,845
JBrowse link
pancreatic A cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Neurod1 neuronal differentiation 1 acts_upstream_of_or_within ISO MGI:97347 (MGI:3768695|PMID:17988662) RGD PMID:17988662 MGI:3768695 NCBI chr 3:66,414,314...66,417,617
Ensembl chr 3:66,414,308...66,417,741
JBrowse link
G Nkx2-2 NK2 homeobox 2 acts_upstream_of_or_within ISO MGI:1339708|MGI:1932100 (MGI:3703458|PMID:17202186), (MGI:3768695|PMID:17988662) RGD PMID:17202186 PMID:17988662 MGI:3703458 MGI:3768695 NCBI chr 3:141,408,460...141,419,083
Ensembl chr 3:141,408,798...141,411,170
JBrowse link
pancreatic D cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rfx6 regulatory factor X, 6 involved_in ISO (MGI:4422104|PMID:20148032) RGD PMID:20148032 MGI:4422104 NCBI chr20:32,709,282...32,764,040
Ensembl chr20:32,717,564...32,764,035
JBrowse link
pancreatic PP cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Neurod1 neuronal differentiation 1 acts_upstream_of_or_within ISO MGI:97347 (MGI:3768695|PMID:17988662) RGD PMID:17988662 MGI:3768695 NCBI chr 3:66,414,314...66,417,617
Ensembl chr 3:66,414,308...66,417,741
JBrowse link
G Nkx2-2 NK2 homeobox 2 acts_upstream_of_or_within ISO MGI:1339708 (MGI:3768695|PMID:17988662) RGD PMID:17988662 MGI:3768695 NCBI chr 3:141,408,460...141,419,083
Ensembl chr 3:141,408,798...141,411,170
JBrowse link
positive regulation of odontoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Serpine1 serpin family E member 1 involved_in ISO
IEA
(PMID:27046084)
GO_REF:0000107
RGD
Ensembl
PMID:27046084 GO_REF:0000107 NCBI chr12:22,641,104...22,651,482
Ensembl chr12:22,641,104...22,651,482
JBrowse link
positive regulation of type B pancreatic cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bad BCL2-associated agonist of cell death involved_in ISS
ISO
GO_REF:0000024
(MGI:3778846|PMID:18223655)
UniProt
RGD
PMID:18223655 GO_REF:0000024 MGI:3778846 NCBI chr 1:222,198,516...222,207,459
Ensembl chr 1:222,198,534...222,207,453
JBrowse link
G Rfx3 regulatory factor X3 involved_in ISO (MGI:4941444|PMID:20413507) RGD PMID:20413507 MGI:4941444 NCBI chr 1:245,853,332...246,110,648
Ensembl chr 1:245,859,633...246,110,218
JBrowse link
regulation of lung goblet cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp1 forkhead box P1 acts_upstream_of_or_within ISO MGI:1344405|MGI:1921373 (MGI:5429471|PMID:22675208) RGD PMID:22675208 MGI:5429471 NCBI chr 4:131,362,178...131,963,466
Ensembl chr 4:131,366,744...131,694,755
JBrowse link
G Foxp4 forkhead box P4 acts_upstream_of_or_within ISO MGI:1344405|MGI:1914004 (MGI:5429471|PMID:22675208) RGD PMID:22675208 MGI:5429471 NCBI chr 9:15,068,378...15,124,962
Ensembl chr 9:15,068,399...15,125,318
JBrowse link
regulation of odontoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cebpb CCAAT/enhancer binding protein beta involved_in IDA PMID:15308669 UniProt PMID:15308669 RGD:1599801 NCBI chr 3:164,424,502...164,425,933
Ensembl chr 3:164,424,515...164,425,910
JBrowse link
G Dspp dentin sialophosphoprotein involved_in IDA PMID:15308669 UniProt PMID:15308669 RGD:1599801 NCBI chr14:6,926,972...6,933,079
Ensembl chr14:6,926,976...6,933,070
JBrowse link
G Nfe2l1 nuclear factor, erythroid 2-like 1 involved_in ISO (PMID:15308669) RGD PMID:15308669 NCBI chr10:84,686,762...84,699,313
Ensembl chr10:84,682,460...84,698,886
JBrowse link
regulation of type B pancreatic cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arntl aryl hydrocarbon receptor nuclear translocator-like involved_in ISS
ISO
GO_REF:0000024
(MGI:4819446|PMID:20562852)
UniProt
RGD
PMID:20562852 GO_REF:0000024 MGI:4819446 NCBI chr 1:178,039,002...178,137,469
Ensembl chr 1:178,039,063...178,137,465
JBrowse link
G Clock clock circadian regulator involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:4819446|PMID:20562852)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:20562852 GO_REF:0000024 GO_REF:0000107 MGI:4819446 NCBI chr14:34,418,226...34,502,218
Ensembl chr14:34,446,616...34,502,218
JBrowse link
G Rheb Ras homolog, mTORC1 binding involved_in ISO
IEA
(PMID:19258434)
GO_REF:0000107
RGD
Ensembl
PMID:19258434 GO_REF:0000107 NCBI chr 4:6,827,429...6,873,384
Ensembl chr 4:6,827,429...6,873,383
JBrowse link
secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa1 forkhead box A1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2384404 (MGI:3603077|PMID:15987773)
Ensembl
RGD
PMID:15987773 GO_REF:0000107 MGI:3603077 NCBI chr 6:78,516,579...78,549,669
Ensembl chr 6:78,545,804...78,549,669
JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO MGI:1933835 (MGI:3612808|PMID:16360140) RGD PMID:16360140 MGI:3612808 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Rxra retinoid X receptor alpha acts_upstream_of_or_within ISO MGI:2385918 (MGI:2385387|PMID:12183441) RGD PMID:12183441 MGI:2385387 NCBI chr 3:6,272,560...6,295,354
Ensembl chr 3:6,211,789...6,295,908
JBrowse link
G Wdr77 WD repeat domain 77 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:3798419 (MGI:3797478|PMID:17032745)
RGD PMID:17032745, PMID:21873635 MGI:3797478, RGD:13792537 NCBI chr 2:208,577,292...208,587,263
Ensembl chr 2:208,420,309...208,587,260
Ensembl chr 2:208,420,309...208,587,260
JBrowse link
squamous basal epithelial stem cell differentiation involved in prostate gland acinus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:3044679 (MGI:3703455|PMID:17215304) RGD PMID:17215304 MGI:3703455 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within ISO MGI:1934580 (MGI:3487217|PMID:15371309) RGD PMID:15371309 MGI:3487217 NCBI chr11:78,234,853...78,456,559
Ensembl chr11:78,234,800...78,456,501
JBrowse link
stomach neuroendocrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:1857470 (MGI:3804618|PMID:18173746) RGD PMID:18173746 MGI:3804618 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
thyroid-stimulating hormone-secreting cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:1202291|PMID:9463347)
Ensembl
RGD
PMID:9463347 GO_REF:0000107 MGI:1202291 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Fgf2 fibroblast growth factor 2 acts_upstream_of_or_within ISO (MGI:1202291|PMID:9463347) RGD PMID:9463347 MGI:1202291 NCBI chr 2:124,081,072...124,134,133
Ensembl chr 2:124,081,072...124,134,681
JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (MGI:1202291|PMID:9463347) RGD PMID:9463347 MGI:1202291 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
G Wnt4 Wnt family member 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857453 (MGI:3777488|PMID:18351662)
Ensembl
RGD
PMID:18351662 GO_REF:0000107 MGI:3777488 NCBI chr 5:155,649,238...155,668,065
Ensembl chr 5:155,649,217...155,672,579
JBrowse link
type B pancreatic cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISO
IEA
ISS
(PMID:11865031)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:11865031 GO_REF:0000024 GO_REF:0000107 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmp5 bone morphogenetic protein 5 involved_in ISO (PMID:11865031) RGD PMID:11865031 NCBI chr 8:82,669,466...82,950,273
Ensembl chr 8:82,878,941...82,950,273
JBrowse link
G Bmp6 bone morphogenetic protein 6 involved_in ISO (PMID:11865031) RGD PMID:11865031 NCBI chr17:26,955,142...27,112,820
Ensembl chr17:26,955,142...27,112,820
JBrowse link
G Cdh2 cadherin 2 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:6216737|PMID:26750727)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:26750727 GO_REF:0000024 GO_REF:0000107 MGI:6216737 NCBI chr18:8,146,971...8,366,037
Ensembl chr18:8,146,971...8,360,684
JBrowse link
G Cdk6 cyclin-dependent kinase 6 involved_in ISO (PMID:20668294) RGD PMID:20668294 NCBI chr 4:27,781,728...27,969,653
Ensembl chr 4:27,785,647...27,966,398
JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5426345|PMID:22529374)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:22529374 GO_REF:0000024 GO_REF:0000107 MGI:5426345 NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
JBrowse link
G Hnf4a hepatocyte nuclear factor 4, alpha involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:159,902,441...159,965,003
Ensembl chr 3:159,902,441...159,965,003
JBrowse link
G Insm1 INSM transcriptional repressor 1 acts_upstream_of_or_within ISO MGI:3656035 (MGI:3655758|PMID:16951258) RGD PMID:16951258 MGI:3655758 NCBI chr 3:140,427,961...140,430,467 JBrowse link
G Mir375 microRNA 375 acts_upstream_of_or_within ISO (MGI:3775688|PMID:17804764) RGD PMID:17804764 MGI:3775688 NCBI chr 9:82,161,716...82,161,790
Ensembl chr 9:82,161,716...82,161,790
JBrowse link
G Mir503 microRNA 503 acts_upstream_of_or_within ISO (MGI:3775688|PMID:17804764) RGD PMID:17804764 MGI:3775688 NCBI chr  X:158,148,476...158,148,546
Ensembl chr  X:158,148,476...158,148,546
JBrowse link
G Mir541 microRNA 541 acts_upstream_of_or_within ISO (MGI:3775688|PMID:17804764) RGD PMID:17804764 MGI:3775688 NCBI chr 6:133,892,655...133,892,744
Ensembl chr 6:133,892,655...133,892,744
JBrowse link
G Nkx2-2 NK2 homeobox 2 acts_upstream_of_or_within ISO MGI:1932100 (MGI:3703458|PMID:17202186), (MGI:3761395|PMID:17456846) RGD PMID:17202186 PMID:17456846 MGI:3703458 MGI:3761395 NCBI chr 3:141,408,460...141,419,083
Ensembl chr 3:141,408,798...141,411,170
JBrowse link
G Nkx6-1 NK6 homeobox 1 IEP RGD PMID:9603781 RGD:2326025 NCBI chr14:9,555,264...9,562,197
Ensembl chr14:9,555,264...9,562,189
JBrowse link
G Pdpk1 3-phosphoinositide dependent protein kinase-1 involved_in ISO (MGI:4365695|PMID:19635472) RGD PMID:19635472 MGI:4365695 NCBI chr10:13,446,373...13,525,248
Ensembl chr10:13,451,624...13,515,448
JBrowse link
G Sidt2 SID1 transmembrane family, member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5532825 (MGI:5529865|PMID:23776622)
Ensembl
RGD
PMID:23776622 GO_REF:0000107 MGI:5529865 NCBI chr 8:50,230,335...50,246,979
Ensembl chr 8:50,230,339...50,246,656
JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2176256|MGI:2684317 (MGI:4833770|PMID:20185815)
Ensembl
RGD
PMID:20185815 GO_REF:0000107 MGI:4833770 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
G Wnt5a Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857617 (MGI:3663526|PMID:16246260)
Ensembl
RGD
PMID:16246260 GO_REF:0000107 MGI:3663526 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
type B pancreatic cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata6 GATA binding protein 6 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3701716|PMID:16887115)
Ensembl
RGD
PMID:16887115 GO_REF:0000107 MGI:3701716 NCBI chr18:2,415,821...2,447,087
Ensembl chr18:2,416,552...2,446,338
JBrowse link
G Insm1 INSM transcriptional repressor 1 involved_in ISO (MGI:3619850|PMID:16511571) RGD PMID:16511571 MGI:3619850 NCBI chr 3:140,427,961...140,430,467 JBrowse link
G Men1 menin 1 IMP RGD PMID:24157940 RGD:9589069 NCBI chr 1:221,704,394...221,710,343
Ensembl chr 1:221,704,493...221,710,331
JBrowse link
G Mir7-1 microRNA 7-1 acts_upstream_of_or_within ISO (MGI:5437569|PMID:22764048) RGD PMID:22764048 MGI:5437569 NCBI chr17:6,675,016...6,675,112
Ensembl chr17:6,675,016...6,675,112
JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within
involved_in
IMP
ISO
IEA
MGI:1934347 (MGI:5437569|PMID:22764048)
GO_REF:0000107
RGD
Ensembl
PMID:22764048, PMID:22403172 GO_REF:0000107 MGI:5437569, RGD:8552355 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Pdx1 pancreatic and duodenal homeobox 1 involved_in IMP
IBA
ISO
PMID:21108535
PMID:21873635
(PMID:12124776), (PMID:24567802)
RGD PMID:12124776 PMID:24567802, PMID:21108535, PMID:21873635 RGD:8553608, RGD:13792537 NCBI chr12:9,496,044...9,501,211
Ensembl chr12:9,496,044...9,501,213
JBrowse link
G Rfx6 regulatory factor X, 6 involved_in ISO (MGI:4422104|PMID:20148032) RGD PMID:20148032 MGI:4422104 NCBI chr20:32,709,282...32,764,040
Ensembl chr20:32,717,564...32,764,035
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO MGI:2136645|MGI:3608931 (MGI:5618205|PMID:25186293) RGD PMID:25186293 MGI:5618205 NCBI chr 4:145,580,869...145,587,835
Ensembl chr 4:145,580,799...145,587,845
JBrowse link
G Zbed6 zinc finger, BED-type containing 6 involved_in ISO (MGI:5511070|PMID:24043816) RGD PMID:24043816 MGI:5511070 NCBI chr13:50,196,143...50,211,670 JBrowse link
type B pancreatic cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-2 NK2 homeobox 2 acts_upstream_of_or_within ISO MGI:1932100 (MGI:3703458|PMID:17202186), (MGI:3768695|PMID:17988662) RGD PMID:17202186 PMID:17988662 MGI:3703458 MGI:3768695 NCBI chr 3:141,408,460...141,419,083
Ensembl chr 3:141,408,798...141,411,170
JBrowse link
type B pancreatic cell maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rfx3 regulatory factor X3 involved_in ISO (MGI:4941444|PMID:20413507) RGD PMID:20413507 MGI:4941444 NCBI chr 1:245,853,332...246,110,648
Ensembl chr 1:245,859,633...246,110,218
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19612
    cellular process 18457
      cellular developmental process 4461
        cell differentiation 4365
          epithelial cell differentiation 712
            columnar/cuboidal epithelial cell differentiation 104
              ameloblast differentiation 2
              columnar/cuboidal epithelial cell development + 50
              glandular epithelial cell differentiation + 60
              intestinal epithelial cell differentiation + 25
              neuroepithelial cell differentiation + 27
Path 2
Term Annotations click to browse term
  biological_process 19612
    developmental process 6792
      anatomical structure development 6265
        tissue development 2070
          epithelium development 1273
            epithelial cell differentiation 712
              columnar/cuboidal epithelial cell differentiation 104
                ameloblast differentiation 2
                columnar/cuboidal epithelial cell development + 50
                glandular epithelial cell differentiation + 60
                intestinal epithelial cell differentiation + 25
                neuroepithelial cell differentiation + 27
paths to the root