ONTOLOGY REPORT - ANNOTATIONS
Term: chondrocyte differentiation
Accession: GO:0002062
browse the term
Definition: The process in which a chondroblast acquires specialized structural and/or functional features of a chondrocyte. A chondrocyte is a polymorphic cell that forms cartilage.
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ACCS
1-aminocyclopropane-1-carboxylate synthase homolog (inactive)
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr18:45,141,870...45,159,255
Ensembl chr18:45,142,586...45,159,255
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ADAMTS12
ADAM metallopeptidase with thrombospondin type 1 motif 12
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:73,887,959...74,188,909
Ensembl chr 4:73,887,924...74,001,984
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ADAMTS7
ADAM metallopeptidase with thrombospondin type 1 motif 7
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:58,182,316...58,223,194
Ensembl chr 3:58,188,004...58,226,185
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ARID5A
AT-rich interaction domain 5A
acts_upstream_of_or_within
ISO
(PMID:21346191)
MGI
PMID:21346191
NCBI chr17:34,320,791...34,333,660
Ensembl chr17:34,321,177...34,333,621
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B9D2
B9 domain containing 2
involved_in
ISO
(PMID:15040835)
UniProt
PMID:15040835
NCBI chr 1:112,621,832...112,627,726
Ensembl chr 1:112,621,633...112,643,885
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BMP2
bone morphogenetic protein 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr24:15,199,667...15,211,509
Ensembl chr24:15,200,291...15,212,217
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BMP4
bone morphogenetic protein 4
involved_in acts_upstream_of
IEA ISO
(PMID:17481601)
Ensembl MGI
PMID:17481601
GO_REF:0000107
NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
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BMPR1A
bone morphogenetic protein receptor type 1A
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:34,499,898...34,582,481
Ensembl chr 4:34,517,492...34,578,923
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BMPR1B
bone morphogenetic protein receptor type 1B
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:18363966)
Ensembl MGI
PMID:18363966
GO_REF:0000107
NCBI chr32:17,761,555...17,978,056
Ensembl chr32:17,870,904...18,016,444
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CCN2
cellular communication network factor 2
acts_upstream_of_or_within
ISO
(PMID:15305294)
MGI
PMID:15305294
NCBI chr 1:25,508,082...25,511,058
Ensembl chr 1:25,507,662...25,510,145
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CCN3
cellular communication network factor 3
involved_in
IEA IBA
Ensembl GO_Central
GO_REF:0000033 GO_REF:0000107
NCBI chr13:18,507,586...18,515,755
Ensembl chr13:18,507,580...18,514,619
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CHRDL2
chordin like 2
acts_upstream_of_or_within
ISO
(PMID:14660436)
MGI
PMID:14660436
NCBI chr21:23,670,257...23,702,788
Ensembl chr21:23,670,238...23,702,788
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COL11A2
collagen type XI alpha 2 chain
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:11668593)
Ensembl MGI
PMID:11668593
GO_REF:0000107
NCBI chr12:2,626,829...2,656,680
Ensembl chr12:2,627,828...2,655,814
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COL2A1
collagen type II alpha 1 chain
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:11680679), (PMID:7590256)
RGD MGI Ensembl
PMID:7590256 PMID:11680679 PMID:21627568
GO_REF:0000107 RGD:5134342
NCBI chr27:6,756,994...6,787,733
Ensembl chr27:6,756,994...6,787,733
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COL3A1
collagen type III alpha 1 chain
involved_in
ISO
(PMID:31655293)
MGI
PMID:31655293
NCBI chr36:30,488,250...30,526,367
Ensembl chr36:30,488,488...30,536,765
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COL9A1
collagen type IX alpha 1 chain
ISO
RGD
PMID:8992886
RGD:1600950
NCBI chr12:32,763,782...32,847,456
Ensembl chr12:32,764,496...32,847,574
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CREB3L2
cAMP responsive element binding protein 3 like 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr16:10,683,169...10,803,071
Ensembl chr16:10,682,935...11,248,029
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CTNNB1
catenin beta 1
involved_in acts_upstream_of
IEA ISO
(PMID:16818445) (PMID:15866163)
Ensembl MGI
PMID:15866163 PMID:16818445
GO_REF:0000107
NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
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CYTL1
cytokine like 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17644814)
Ensembl MGI
PMID:17644814
GO_REF:0000107
NCBI chr 3:70,354,099...70,358,521
Ensembl chr 3:70,354,090...70,359,128
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DLL4
delta like canonical Notch ligand 4
ISO
RGD
PMID:26872979
RGD:11521858
NCBI chr30:8,059,463...8,068,742
Ensembl chr30:8,059,512...8,067,940
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EXT1
exostosin glycosyltransferase 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:20080592), (PMID:20404326), (PMID:23458899), (PMID:28768899)
Ensembl MGI
PMID:20080592 PMID:20404326 PMID:23458899 PMID:28768899
GO_REF:0000107
NCBI chr13:17,172,497...17,457,084
Ensembl chr13:17,172,705...17,456,469
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EXT2
exostosin glycosyltransferase 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:16236767)
Ensembl MGI
PMID:16236767
GO_REF:0000107
NCBI chr18:44,987,310...45,122,339
Ensembl chr18:44,987,748...45,129,974
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FGF18
fibroblast growth factor 18
acts_upstream_of
ISO
(PMID:15781473)
MGI
PMID:15781473
NCBI chr 4:40,714,891...40,748,892
Ensembl chr 4:40,715,060...40,748,518
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FGF9
fibroblast growth factor 9
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17544391)
Ensembl MGI
PMID:17544391
GO_REF:0000107
NCBI chr25:16,630,321...16,665,935
Ensembl chr25:16,632,812...16,663,550
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FGFR1
fibroblast growth factor receptor 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17544391)
Ensembl MGI
PMID:17544391
GO_REF:0000107
NCBI chr16:27,029,902...27,080,514
Ensembl chr16:27,031,588...27,078,261
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FOSL2
FOS like 2, AP-1 transcription factor subunit
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:15509771)
Ensembl MGI
PMID:15509771
GO_REF:0000107
NCBI chr17:22,340,469...22,364,994
Ensembl chr17:22,341,322...22,361,772
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GDF5
growth differentiation factor 5
involved_in acts_upstream_of
IEA ISO
(PMID:9885252)
Ensembl MGI
PMID:9885252
GO_REF:0000107
NCBI chr24:24,395,699...24,400,302
Ensembl chr24:24,395,263...24,399,928
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GLI2
GLI family zinc finger 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:23333501)
Ensembl MGI
PMID:23333501
GO_REF:0000107
NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658
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GLI3
GLI family zinc finger 3
involved_in acts_upstream_of
IEA ISO
(PMID:16284117)
Ensembl MGI
PMID:16284117
GO_REF:0000107
NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
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GPLD1
glycosylphosphatidylinositol specific phospholipase D1
involved_in
ISO
(PMID:15946906)
UniProt
PMID:15946906
NCBI chr35:22,495,001...22,556,264
Ensembl chr35:22,495,073...22,554,105
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HES5
hes family bHLH transcription factor 5
NOT|involved_in
ISO
(PMID:17093926)
UniProt
PMID:17093926
NCBI chr 5:57,387,961...57,389,412
Ensembl chr 5:57,388,674...57,389,388
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HIF1A
hypoxia inducible factor 1 subunit alpha
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:15073147)
Ensembl MGI
PMID:15073147
GO_REF:0000107
NCBI chr 8:36,614,045...36,656,692
Ensembl chr 8:36,614,045...36,656,692
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HMGA2
high mobility group AT-hook 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr10:8,348,101...8,491,435
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HOXA11
homeobox A11
involved_in acts_upstream_of
IEA ISO
(PMID:14668414)
Ensembl MGI
PMID:14668414
GO_REF:0000107
NCBI chr14:40,355,907...40,360,120
Ensembl chr14:40,357,478...40,359,919
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HOXD11
homeobox D11
acts_upstream_of
ISO
(PMID:14668414)
MGI
PMID:14668414
NCBI chr36:19,913,064...19,926,868
Ensembl chr36:19,914,431...19,916,766
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HSPG2
heparan sulfate proteoglycan 2
acts_upstream_of_or_within
ISO
(PMID:10545953)
MGI
PMID:10545953
NCBI chr 2:77,263,534...77,366,558
Ensembl chr 2:77,301,858...77,367,724
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IFT80
intraflagellar transport 80
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:23333501)
Ensembl MGI
PMID:23333501
GO_REF:0000107
NCBI chr34:26,332,456...26,455,428
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IHH
Indian hedgehog signaling molecule
involved_in acts_upstream_of acts_upstream_of_or_within
IEA ISO
(PMID:16284117) (PMID:15951842)
Ensembl MGI
PMID:15951842 PMID:16284117
GO_REF:0000107
NCBI chr37:25,616,942...25,622,989
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LTBP3
latent transforming growth factor beta binding protein 3
involved_in acts_upstream_of
IEA ISO
(PMID:11790802)
Ensembl MGI
PMID:11790802
GO_REF:0000107
NCBI chr18:51,653,783...51,667,793
Ensembl chr18:51,659,098...51,667,433
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MAPK14
mitogen-activated protein kinase 14
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17644814)
Ensembl MGI
PMID:17644814
GO_REF:0000107
NCBI chr12:5,145,647...5,221,558
Ensembl chr12:5,146,037...5,220,603
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MATN1
matrilin 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:16877353)
Ensembl MGI
PMID:16877353
GO_REF:0000107
NCBI chr 2:70,225,642...70,234,972
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MEF2C
myocyte enhancer factor 2C
acts_upstream_of_or_within
ISO
(PMID:17336904)
MGI
PMID:17336904
NCBI chr 3:19,778,997...19,948,203
Ensembl chr 3:19,779,007...19,943,852
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MEF2D
myocyte enhancer factor 2D
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17336904)
Ensembl MGI
PMID:17336904
GO_REF:0000107
NCBI chr 7:41,455,771...41,473,807
Ensembl chr 7:41,458,514...41,470,197
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MUSTN1
musculoskeletal, embryonic nuclear protein 1
involved_in
IEA
InterPro
GO_REF:0000002
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NFIB
nuclear factor I B
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr11:34,573,136...35,010,319
Ensembl chr11:34,579,431...34,901,322
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NPR2
natriuretic peptide receptor 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr11:52,283,680...52,339,247
Ensembl chr11:52,321,590...52,339,249
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OSR1
odd-skipped related transcription factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr17:14,508,543...14,515,657
Ensembl chr17:14,509,333...14,589,228
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OSR2
odd-skipped related transciption factor 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr13:1,019,167...1,031,622
Ensembl chr13:1,023,879...1,031,225
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PRKCA
protein kinase C alpha
acts_upstream_of_or_within
ISO
(PMID:17644814)
MGI
PMID:17644814
NCBI chr 9:13,638,106...13,879,571
Ensembl chr 9:13,644,010...13,967,630
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PTH1R
parathyroid hormone 1 receptor
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:9832460) (PMID:16476422)
Ensembl MGI
PMID:9832460 PMID:16476422
GO_REF:0000107
NCBI chr20:41,905,265...41,924,712
Ensembl chr20:41,905,273...41,925,794
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PTHLH
parathyroid hormone like hormone
acts_upstream_of
ISO
(PMID:8895385)
MGI
PMID:8895385
NCBI chr27:19,781,557...19,795,078
Ensembl chr27:19,781,557...19,795,078
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RB1
RB transcriptional corepressor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr22:3,061,621...3,204,625
Ensembl chr22:3,063,239...3,257,726
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ROR2
receptor tyrosine kinase like orphan receptor 2
acts_upstream_of_or_within
ISO
(PMID:14745966)
MGI
PMID:14745966
NCBI chr 1:95,209,122...95,280,956
Ensembl chr 1:95,088,745...95,280,151
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RUNX1
RUNX family transcription factor 1
involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr31:30,170,859...30,420,344
Ensembl chr31:30,170,605...30,420,839
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RUNX2
RUNX family transcription factor 2
involved_in acts_upstream_of acts_upstream_of_or_within
IEA IBA ISO
(PMID:10072783) (PMID:22916278) (PMID:16476422)
Ensembl GO_Central MGI
PMID:10072783 PMID:16476422 PMID:22916278
GO_REF:0000033 GO_REF:0000107
NCBI chr12:13,723,535...13,842,565
Ensembl chr12:13,628,539...13,840,785 Ensembl chr12:13,628,539...13,840,785
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RUNX3
RUNX family transcription factor 3
acts_upstream_of_or_within involved_in
ISO IBA
(PMID:22916278)
MGI GO_Central
PMID:22916278
GO_REF:0000033
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SCX
scleraxis bHLH transcription factor
involved_in
ISO
(PMID:20059955)
UniProt
PMID:20059955
NCBI chr13:37,701,781...37,704,949
Ensembl chr13:37,703,232...37,704,657
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SHOX2
SHOX homeobox 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:22916278)
Ensembl MGI
PMID:22916278
GO_REF:0000107
NCBI chr23:51,484,696...51,492,586
Ensembl chr23:51,484,421...51,492,566
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SIX2
SIX homeobox 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:20515681)
Ensembl MGI
PMID:20515681
GO_REF:0000107
NCBI chr10:47,399,152...47,403,503
Ensembl chr10:47,400,034...47,403,509
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SLC26A2
solute carrier family 26 member 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:59,068,601...59,090,803
Ensembl chr 4:59,074,008...59,078,892
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SLC39A14
solute carrier family 39 member 14
involved_in acts_upstream_of
IEA ISO
(PMID:21445361)
Ensembl UniProt
PMID:21445361
GO_REF:0000107
NCBI chr25:34,854,371...34,901,030
Ensembl chr25:34,846,653...34,869,695
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SNX19
sorting nexin 19
involved_in acts_upstream_of_or_within
ISO
(PMID:19877062)
GO_Central MGI
PMID:19877062
NCBI chr 5:4,044,597...4,085,438
Ensembl chr 5:4,045,097...4,084,363
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SOX5
SRY-box transcription factor 5
involved_in
ISO
(PMID:11702786), (PMID:14993235)
UniProt
PMID:11702786 PMID:14993235
NCBI chr27:22,857,661...23,855,709
Ensembl chr27:23,452,985...23,851,380
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SOX6
SRY-box transcription factor 6
involved_in
ISO
(PMID:11702786), (PMID:14993235)
UniProt
PMID:11702786 PMID:14993235
NCBI chr21:38,737,072...39,320,257
Ensembl chr21:38,737,247...39,216,549
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SOX9
SRY-box transcription factor 9
involved_in acts_upstream_of acts_upstream_of_or_within
ISS ISO IBA IEA
(PMID:11371614) (PMID:12414734)
UniProt MGI GO_Central Ensembl
PMID:11371614 PMID:12414734
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172
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TGFB1
transforming growth factor beta 1
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:112,629,476...112,643,885
Ensembl chr 1:112,621,633...112,643,885
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TGFBI
transforming growth factor beta induced
ISO
RGD
PMID:16546826
RGD:1599388
NCBI chr11:23,932,038...23,971,983
Ensembl chr11:23,938,453...23,971,607
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TRPS1
transcriptional repressor GATA binding 1
acts_upstream_of_or_within
ISO
(PMID:18363966)
MGI
PMID:18363966
NCBI chr13:15,017,180...15,273,177
Ensembl chr13:15,022,652...15,273,666
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TWSG1
twisted gastrulation BMP signaling modulator 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:14681194)
Ensembl MGI
PMID:14681194
GO_REF:0000107
NCBI chr 7:75,337,347...75,397,485
Ensembl chr 7:75,335,235...75,398,325
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WNT10B
Wnt family member 10B
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr27:5,599,905...5,605,506
Ensembl chr27:5,601,089...5,605,501
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WNT2B
Wnt family member 2B
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr17:63,034,719...63,054,369
Ensembl chr17:63,035,883...63,047,956
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WNT5B
Wnt family member 5B
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr27:43,662,482...43,679,713
Ensembl chr27:43,620,284...43,677,078
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WNT7A
Wnt family member 7A
involved_in
ISO
(PMID:17202865)
AgBase
PMID:17202865
NCBI chr20:4,072,010...4,139,521
Ensembl chr20:4,073,929...4,139,436
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WNT9A
Wnt family member 9A
acts_upstream_of
ISO
(PMID:16818445)
MGI
PMID:16818445
NCBI chr14:946,843...959,289
Ensembl chr14:953,244...959,295
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ACAN
aggrecan
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:9664687)
Ensembl MGI
PMID:9664687
GO_REF:0000107
NCBI chr 3:51,995,100...52,031,812
Ensembl chr 3:51,969,779...52,031,544
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BMPR2
bone morphogenetic protein receptor type 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr37:11,342,292...11,540,199
Ensembl chr37:11,342,384...11,533,024
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BPNT2
3'(2'), 5'-bisphosphate nucleotidase 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:18539921)
Ensembl MGI
PMID:18539921
GO_REF:0000107
NCBI chr29:8,176,977...8,215,561
Ensembl chr29:8,182,508...8,215,868
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CHST11
carbohydrate sulfotransferase 11
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:16079159)
Ensembl MGI
PMID:16079159
GO_REF:0000107
NCBI chr10:33,555,629...33,810,808
Ensembl chr10:33,555,628...33,810,558
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CHSY1
chondroitin sulfate synthase 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:22280990)
Ensembl MGI
PMID:22280990
GO_REF:0000107
NCBI chr 3:39,844,227...39,916,484
Ensembl chr 3:39,844,195...40,021,573
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COL11A1
collagen type XI alpha 1 chain
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:4100752)
Ensembl MGI
PMID:4100752
GO_REF:0000107
NCBI chr 6:47,425,387...47,622,189
Ensembl chr 6:47,425,307...47,621,012
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COMP
cartilage oligomeric matrix protein
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:22006726) (PMID:17588960)
Ensembl MGI
PMID:17588960 PMID:22006726
GO_REF:0000107
NCBI chr20:44,306,813...44,314,575
Ensembl chr20:44,306,859...44,314,625
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ECM1
extracellular matrix protein 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:20138147)
Ensembl MGI
PMID:20138147
GO_REF:0000107
NCBI chr17:59,696,125...59,701,990
Ensembl chr17:59,696,477...59,701,744
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EIF2AK3
eukaryotic translation initiation factor 2 alpha kinase 3
acts_upstream_of_or_within
ISO
(PMID:12865332)
MGI
PMID:12865332
NCBI chr17:37,886,397...37,950,671
Ensembl chr17:37,886,601...37,949,812
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FGF18
fibroblast growth factor 18
acts_upstream_of_or_within
ISO
(PMID:17014841)
MGI
PMID:17014841
NCBI chr 4:40,714,891...40,748,892
Ensembl chr 4:40,715,060...40,748,518
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GALNT3
polypeptide N-acetylgalactosaminyltransferase 3
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:25107907)
MGI Ensembl
PMID:25107907
GO_REF:0000107
NCBI chr36:10,895,366...10,990,848
Ensembl chr36:10,896,128...10,919,000
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HOXA11
homeobox A11
involved_in acts_upstream_of
IEA ISO
(PMID:14668414)
Ensembl MGI
PMID:14668414
GO_REF:0000107
NCBI chr14:40,355,907...40,360,120
Ensembl chr14:40,357,478...40,359,919
G
HOXD11
homeobox D11
acts_upstream_of
ISO
(PMID:14668414)
MGI
PMID:14668414
NCBI chr36:19,913,064...19,926,868
Ensembl chr36:19,914,431...19,916,766
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MIA3
MIA SH3 domain ER export factor 3
acts_upstream_of_or_within
ISO
(PMID:21606205)
MGI
PMID:21606205
NCBI chr38:16,880,411...16,936,368
Ensembl chr38:16,879,740...16,935,844
G
MSX2
msh homeobox 2
acts_upstream_of_or_within
ISO
(PMID:10742104)
MGI
PMID:10742104
NCBI chr 4:38,002,724...38,007,407
Ensembl chr 4:38,002,428...38,007,407
G
RARG
retinoic acid receptor gamma
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr27:1,958,432...1,978,471
Ensembl chr27:1,958,204...1,978,476
G
RUNX2
RUNX family transcription factor 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10213384)
Ensembl MGI
PMID:10213384
GO_REF:0000107
NCBI chr12:13,723,535...13,842,565
Ensembl chr12:13,628,539...13,840,785 Ensembl chr12:13,628,539...13,840,785
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SFRP2
secreted frizzled related protein 2
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:18729207)
MGI Ensembl
PMID:18729207
GO_REF:0000107
NCBI chr15:51,541,197...51,548,765
Ensembl chr15:51,540,500...51,548,765
G
SHOX2
SHOX homeobox 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17481601)
Ensembl MGI
PMID:17481601
GO_REF:0000107
NCBI chr23:51,484,696...51,492,586
Ensembl chr23:51,484,421...51,492,566
G
SMPD3
sphingomyelin phosphodiesterase 3
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:24505141) (PMID:17591962)
Ensembl MGI
PMID:17591962 PMID:24505141
GO_REF:0000107
NCBI chr 5:81,089,657...81,172,173
Ensembl chr 5:81,142,888...81,172,189
G
SOX9
SRY-box transcription factor 9
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:18415932)
Ensembl MGI
PMID:18415932
GO_REF:0000107
NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172
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SULF1
sulfatase 1
involved_in
IEA ISS
UniProt Ensembl
GO_REF:0000024 GO_REF:0000104 GO_REF:0000107
NCBI chr29:18,709,406...18,885,248
Ensembl chr29:18,709,445...18,884,378
G
SULF2
sulfatase 2
involved_in
IEA
Ensembl UniProt
GO_REF:0000104 GO_REF:0000107
NCBI chr24:34,732,000...34,850,347
Ensembl chr24:34,732,037...34,828,569
G
SERPINH1
serpin family H member 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:22492985)
Ensembl MGI
PMID:22492985
GO_REF:0000107
NCBI chr21:23,032,761...23,041,649
Ensembl chr21:23,032,767...23,041,625
G
SMPD3
sphingomyelin phosphodiesterase 3
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:21788370)
Ensembl MGI
PMID:21788370
GO_REF:0000107
NCBI chr 5:81,089,657...81,172,173
Ensembl chr 5:81,142,888...81,172,189
G
AXIN2
axin 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:19623616)
Ensembl MGI
PMID:19623616
GO_REF:0000107
NCBI chr 9:14,559,476...14,588,950
Ensembl chr 9:14,559,388...14,588,530
G
IHH
Indian hedgehog signaling molecule
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:25639508)
Ensembl MGI
PMID:25639508
GO_REF:0000107
NCBI chr37:25,616,942...25,622,989
G
SCUBE2
signal peptide, CUB domain and EGF like domain containing 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:25639508)
Ensembl MGI
PMID:25639508
GO_REF:0000107
NCBI chr21:32,370,361...32,435,608
Ensembl chr21:32,370,913...32,574,588
G
SOX9
SRY-box transcription factor 9
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172
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TRIP11
thyroid hormone receptor interactor 11
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:20089971)
MGI Ensembl
PMID:20089971
GO_REF:0000107
NCBI chr 8:1,244,104...1,314,251
Ensembl chr 8:1,247,155...1,354,720
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EXT1
exostosin glycosyltransferase 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:23958822)
Ensembl MGI
PMID:23958822
GO_REF:0000107
NCBI chr13:17,172,497...17,457,084
Ensembl chr13:17,172,705...17,456,469
G
MEX3C
mex-3 RNA binding family member C
acts_upstream_of_or_within
ISO
(PMID:22357625)
MGI
PMID:22357625
NCBI chr 1:23,818,790...23,838,106
Ensembl chr 1:23,818,099...23,836,297
G
MEX3C
mex-3 RNA binding family member C
involved_in
IEA
Ensembl
GO_REF:0000107
G
SOX9
SRY-box transcription factor 9
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172
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COL27A1
collagen type XXVII alpha 1 chain
acts_upstream_of_or_within
ISO
(PMID:22206015)
MGI
PMID:22206015
NCBI chr11:68,413,101...68,548,408
Ensembl chr11:68,420,263...68,546,947
G
POC1A
POC1 centriolar protein A
acts_upstream_of_or_within
ISO
(PMID:26496357)
MGI
PMID:26496357
NCBI chr20:37,592,080...37,659,783
Ensembl chr20:37,544,186...37,681,725
G
ATF2
activating transcription factor 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr36:19,032,376...19,103,382
Ensembl chr36:19,010,717...19,103,292
G
IFT80
intraflagellar transport 80
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:26098911)
Ensembl MGI
PMID:26098911
GO_REF:0000107
NCBI chr34:26,332,456...26,455,428
G
NPPC
natriuretic peptide C
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr25:43,714,545...43,718,969
Ensembl chr25:43,717,939...43,718,996
G
RARG
retinoic acid receptor gamma
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr27:1,958,432...1,978,471
Ensembl chr27:1,958,204...1,978,476
G
SOX9
SRY-box transcription factor 9
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172
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TGFBR2
transforming growth factor beta receptor 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:21420963)
Ensembl MGI
PMID:21420963
GO_REF:0000107
NCBI chr23:13,886,869...13,946,480
Ensembl chr23:13,889,000...13,977,636
G
MATN1
matrilin 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:16877353)
Ensembl MGI
PMID:16877353
GO_REF:0000107
NCBI chr 2:70,225,642...70,234,972
G
PTHLH
parathyroid hormone like hormone
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:90087)
MGI Ensembl
PMID:90087
GO_REF:0000107
NCBI chr27:19,781,557...19,795,078
Ensembl chr27:19,781,557...19,795,078
G
RFLNA
refilin A
involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr26:5,501,223...5,509,118
Ensembl chr26:5,502,106...5,505,458
G
RFLNB
refilin B
involved_in acts_upstream_of_or_within
IEA IBA ISO
(PMID:24436304)
Ensembl GO_Central MGI
PMID:24436304
GO_REF:0000033 GO_REF:0000107
NCBI chr 9:45,232,910...45,239,569
Ensembl chr 9:45,232,975...45,239,130
G
ADAMTS12
ADAM metallopeptidase with thrombospondin type 1 motif 12
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:73,887,959...74,188,909
Ensembl chr 4:73,887,924...74,001,984
G
ADAMTS7
ADAM metallopeptidase with thrombospondin type 1 motif 7
involved_in
ISO
(PMID:22247065)
BHF-UCL
PMID:22247065
NCBI chr 3:58,182,316...58,223,194
Ensembl chr 3:58,188,004...58,226,185
G
BMP4
bone morphogenetic protein 4
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17481601)
Ensembl MGI
PMID:17481601
GO_REF:0000107
NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
G
CCN4
cellular communication network factor 4
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr13:29,648,720...29,683,822
Ensembl chr13:29,648,639...29,679,732
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CHADL
chondroadherin like
involved_in
ISO
(PMID:25451920)
UniProt
PMID:25451920
NCBI chr10:23,992,848...24,006,492
Ensembl chr10:23,953,912...24,003,162
G
CTNNB1
catenin beta 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:15866163) (PMID:16818445)
Ensembl MGI
PMID:15866163 PMID:16818445
GO_REF:0000107
NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
G
EFEMP1
EGF containing fibulin extracellular matrix protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr10:56,632,801...56,694,872
Ensembl chr10:56,579,899...56,787,187
G
GDF5
growth differentiation factor 5
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr24:24,395,699...24,400,302
Ensembl chr24:24,395,263...24,399,928
G
GLI2
GLI family zinc finger 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17328886)
Ensembl MGI
PMID:17328886
GO_REF:0000107
NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658
G
GLI3
GLI family zinc finger 3
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:16284117)
Ensembl MGI
PMID:16284117
GO_REF:0000107
NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
G
GREM1
gremlin 1, DAN family BMP antagonist
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr30:2,219,535...2,231,868
Ensembl chr30:2,222,898...2,225,418
G
IHH
Indian hedgehog signaling molecule
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:16284117)
Ensembl MGI
PMID:16284117
GO_REF:0000107
NCBI chr37:25,616,942...25,622,989
G
LOC487079
homeobox protein Mohawk
ISO
RGD
PMID:27370800
RGD:40924660
NCBI chr 2:5,898,155...5,964,577
G
LTBP3
latent transforming growth factor beta binding protein 3
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:11790802)
Ensembl MGI
PMID:11790802
GO_REF:0000107
NCBI chr18:51,653,783...51,667,793
Ensembl chr18:51,659,098...51,667,433
G
NKX3-2
NK3 homeobox 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:66,543,046...66,546,779
Ensembl chr 3:66,543,046...66,545,580
G
NR5A2
nuclear receptor subfamily 5 group A member 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:2,925,915...3,062,118
Ensembl chr 7:2,927,326...3,062,348
G
PTH
parathyroid hormone
involved_in
ISO
PMID:11604398
CAFA
PMID:11604398
RGD:12793028
NCBI chr21:36,417,062...36,419,967
Ensembl chr21:36,417,058...36,419,967
G
PTHLH
parathyroid hormone like hormone
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:90087) (PMID:17328886) (PMID:8895385)
MGI Ensembl
PMID:90087 PMID:8895385 PMID:17328886
GO_REF:0000107
NCBI chr27:19,781,557...19,795,078
Ensembl chr27:19,781,557...19,795,078
G
PTPN11
protein tyrosine phosphatase non-receptor type 11
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr26:9,989,218...10,072,245
Ensembl chr26:9,989,425...10,067,481
G
RARB
retinoic acid receptor beta
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10684250)
Ensembl MGI
PMID:10684250
GO_REF:0000107
NCBI chr23:18,207,253...18,931,128
Ensembl chr23:18,207,760...18,482,652
G
RARG
retinoic acid receptor gamma
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10684250)
Ensembl MGI
PMID:10684250
GO_REF:0000107
NCBI chr27:1,958,432...1,978,471
Ensembl chr27:1,958,204...1,978,476
G
SNAI2
snail family transcriptional repressor 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr29:1,154,132...1,156,653
Ensembl chr29:1,154,036...1,156,653
G
SOX9
SRY-box transcription factor 9
involved_in acts_upstream_of_or_within
ISS ISO IEA
(PMID:11371614)
UniProt MGI Ensembl
PMID:11371614
GO_REF:0000024 GO_REF:0000107
NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172
G
TGFBR1
transforming growth factor beta receptor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr11:56,191,383...56,223,042
Ensembl chr11:56,161,772...56,218,594
G
WNT9A
Wnt family member 9A
acts_upstream_of_or_within
ISO
(PMID:16818445)
MGI
PMID:16818445
NCBI chr14:946,843...959,289
Ensembl chr14:953,244...959,295
G
HOXA11
homeobox A11
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:14668414)
Ensembl MGI
PMID:14668414
GO_REF:0000107
NCBI chr14:40,355,907...40,360,120
Ensembl chr14:40,357,478...40,359,919
G
HOXD11
homeobox D11
acts_upstream_of_or_within
ISO
(PMID:14668414)
MGI
PMID:14668414
NCBI chr36:19,913,064...19,926,868
Ensembl chr36:19,914,431...19,916,766
G
BMP6
bone morphogenetic protein 6
ISO
RGD
PMID:23077084
RGD:7242190
NCBI chr35:7,780,763...7,833,095
Ensembl chr35:7,804,231...7,831,845
G
FGF18
fibroblast growth factor 18
acts_upstream_of_or_within
ISO
(PMID:15781473)
MGI
PMID:15781473
NCBI chr 4:40,714,891...40,748,892
Ensembl chr 4:40,715,060...40,748,518
G
GDF5
growth differentiation factor 5
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:18363966) (PMID:9885252)
Ensembl MGI
PMID:9885252 PMID:18363966
GO_REF:0000107
NCBI chr24:24,395,699...24,400,302
Ensembl chr24:24,395,263...24,399,928
G
GDF6
growth differentiation factor 6
involved_in
ISO
(PMID:26643732)
UniProt
PMID:26643732
NCBI chr29:40,676,851...40,694,174
Ensembl chr29:40,676,851...40,694,174 Ensembl chr29:40,676,851...40,694,174
G
GLI3
GLI family zinc finger 3
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17328886)
Ensembl MGI
PMID:17328886
GO_REF:0000107
NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
G
HOXA11
homeobox A11
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:14668414)
Ensembl MGI
PMID:14668414
GO_REF:0000107
NCBI chr14:40,355,907...40,360,120
Ensembl chr14:40,357,478...40,359,919
G
HOXD11
homeobox D11
acts_upstream_of_or_within
ISO
(PMID:14668414)
MGI
PMID:14668414
NCBI chr36:19,913,064...19,926,868
Ensembl chr36:19,914,431...19,916,766
G
LOXL2
lysyl oxidase like 2
involved_in
ISO
(PMID:21071451)
UniProt
PMID:21071451
NCBI chr25:34,095,858...34,186,775
Ensembl chr25:34,126,335...34,185,969
G
MUSTN1
musculoskeletal, embryonic nuclear protein 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:19410023)
Ensembl MGI
PMID:19410023
GO_REF:0000107
G
PKDCC
protein kinase domain containing, cytoplasmic
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr17:33,659,352...33,669,237
Ensembl chr17:33,659,272...33,668,892
G
POR
cytochrome p450 oxidoreductase
ISO
RGD
PMID:19264869
RGD:2316785
NCBI chr 6:7,247,780...7,316,282
Ensembl chr 6:7,263,574...7,316,297
G
PRKG2
protein kinase cGMP-dependent 2
ISO
RGD
PMID:15466490
RGD:150429792
NCBI chr32:5,266,435...5,365,396
Ensembl chr32:5,266,442...5,365,396
G
RELA
RELA proto-oncogene, NF-kB subunit
ISO
RGD
PMID:17884819
RGD:2298851
NCBI chr18:51,550,003...51,558,861
Ensembl chr18:51,550,040...51,558,875
G
RUNX2
RUNX family transcription factor 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10072783)
Ensembl MGI
PMID:10072783
GO_REF:0000107
NCBI chr12:13,723,535...13,842,565
Ensembl chr12:13,628,539...13,840,785 Ensembl chr12:13,628,539...13,840,785
G
SMAD3
SMAD family member 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr30:31,246,313...31,360,098
Ensembl chr30:31,245,657...31,363,337
G
SOX5
SRY-box transcription factor 5
involved_in
IEA IBA
Ensembl GO_Central
GO_REF:0000033 GO_REF:0000107
NCBI chr27:22,857,661...23,855,709
Ensembl chr27:23,452,985...23,851,380
G
SOX6
SRY-box transcription factor 6
involved_in
IEA IBA
Ensembl GO_Central
GO_REF:0000033 GO_REF:0000107
NCBI chr21:38,737,072...39,320,257
Ensembl chr21:38,737,247...39,216,549
G
SOX9
SRY-box transcription factor 9
involved_in
ISS IBA IEA
UniProt GO_Central Ensembl
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172
G
THRB
thyroid hormone receptor beta
ISO
RGD
PMID:15647824
RGD:1601663
NCBI chr23:19,278,650...19,648,547
Ensembl chr23:19,277,493...19,660,283
G
ZBTB16
zinc finger and BTB domain containing 16
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:19,082,594...19,284,360
Ensembl chr 5:19,087,154...19,267,628
G
ZNF219
zinc finger protein 219
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr15:18,178,861...18,186,650
Ensembl chr15:18,180,901...18,192,773
G
SMAD7
SMAD family member 7
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:79,706,485...79,734,673
Ensembl chr 7:79,706,705...79,734,749
G
AXIN2
axin 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:19623616)
Ensembl MGI
PMID:19623616
GO_REF:0000107
NCBI chr 9:14,559,476...14,588,950
Ensembl chr 9:14,559,388...14,588,530
G
RFLNA
refilin A
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr26:5,501,223...5,509,118
Ensembl chr26:5,502,106...5,505,458
G
RFLNB
refilin B
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr 9:45,232,910...45,239,569
Ensembl chr 9:45,232,975...45,239,130
G
CCN2
cellular communication network factor 2
acts_upstream_of_or_within
ISO
(PMID:18597638)
MGI
PMID:18597638
NCBI chr 1:25,508,082...25,511,058
Ensembl chr 1:25,507,662...25,510,145
G
GLG1
golgi glycoprotein 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:20530870)
Ensembl MGI
PMID:20530870
GO_REF:0000107
NCBI chr 5:76,020,743...76,171,477
Ensembl chr 5:76,020,084...76,167,007
G
HOXA11
homeobox A11
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:22916278)
Ensembl MGI
PMID:22916278
GO_REF:0000107
NCBI chr14:40,355,907...40,360,120
Ensembl chr14:40,357,478...40,359,919
G
HOXD11
homeobox D11
acts_upstream_of_or_within
ISO
(PMID:22916278)
MGI
PMID:22916278
NCBI chr36:19,913,064...19,926,868
Ensembl chr36:19,914,431...19,916,766
G
LNPK
lunapark, ER junction formation factor
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:22916278)
Ensembl MGI
PMID:22916278
GO_REF:0000107
NCBI chr36:19,731,523...19,809,349
Ensembl chr36:19,732,276...19,808,769
G
LOC491316
midkine
involved_in
ISO
(PMID:25551381)
UniProt
PMID:25551381
NCBI chr 9:55,100,491...55,101,081
G
MAF
MAF bZIP transcription factor
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:14512017)
Ensembl MGI
PMID:14512017
GO_REF:0000107
NCBI chr 5:71,965,291...71,982,903
Ensembl chr 5:71,965,500...71,981,735
G
MBOAT2
membrane bound O-acyltransferase domain containing 2
involved_in
ISO
(PMID:29196633)
UniProt
PMID:29196633
NCBI chr17:6,090,746...6,217,139
Ensembl chr17:6,094,900...6,213,142
G
PTHLH
parathyroid hormone like hormone
involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr27:19,781,557...19,795,078
Ensembl chr27:19,781,557...19,795,078
G
SHOX2
SHOX homeobox 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:16537395)
Ensembl MGI
PMID:16537395
GO_REF:0000107
NCBI chr23:51,484,696...51,492,586
Ensembl chr23:51,484,421...51,492,566
G
SIX2
SIX homeobox 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr10:47,399,152...47,403,503
Ensembl chr10:47,400,034...47,403,509
G
TRPS1
transcriptional repressor GATA binding 1
involved_in
ISO
(PMID:19389374)
UniProt
PMID:19389374
NCBI chr13:15,017,180...15,273,177
Ensembl chr13:15,022,652...15,273,666
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all