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ONTOLOGY REPORT - ANNOTATIONS


Term:lymph vessel development
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Accession:GO:0001945 term browser browse the term
Definition:The process whose specific outcome is the progression of a lymph vessel over time, from its formation to the mature structure.



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lymph vessel development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccbe1 collagen and calcium binding EGF domains 1 acts_upstream_of_or_within ISO MGI:5495674 (MGI:5582954|PMID:24733830) RGD PMID:24733830 MGI:5582954 NCBI chr18:59,579,851...59,823,977 JBrowse link
G Efnb2 ephrin B2 acts_upstream_of_or_within ISO MGI:3573787 (MGI:3527923|PMID:15687262) RGD PMID:15687262 MGI:3527923 NCBI chr16:80,783,389...80,827,420
Ensembl chr16:80,783,417...80,824,391
JBrowse link
G Flt4 Fms related receptor tyrosine kinase 4 acts_upstream_of_or_within
involved_in
ISO MGI:3039635 (MGI:4443218|PMID:20439428)
(MGI:4436974|PMID:19903896)
RGD PMID:19903896 PMID:20439428 MGI:4436974 MGI:4443218 NCBI chr10:33,913,725...33,954,770
Ensembl chr10:33,913,608...33,954,770
JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within ISO MGI:1347481 (MGI:3701373|PMID:16678147) RGD PMID:16678147 MGI:3701373 NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803
JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1347466 (MGI:3701373|PMID:16678147) RGD PMID:16678147 MGI:3701373 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737
JBrowse link
G Heg1 heart development protein with EGF-like domains 1 acts_upstream_of_or_within ISO MGI:3838392 (MGI:3837878|PMID:19151727) RGD PMID:19151727 MGI:3837878 NCBI chr11:67,006,954...67,095,020
Ensembl chr11:66,957,190...67,095,051
JBrowse link
G Kdr kinase insert domain receptor acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:3039635 (MGI:4443218|PMID:20439428)
GO_REF:0000107
RGD
Ensembl
PMID:20439428 GO_REF:0000107 MGI:4443218 NCBI chr14:32,217,871...32,261,018
Ensembl chr14:32,217,871...32,261,018
JBrowse link
G Nr2f2 nuclear receptor subfamily 2, group F, member 2 acts_upstream_of_or_within ISO (PMID:19210544) RGD PMID:19210544 NCBI chr 1:124,008,282...124,022,521
Ensembl chr 1:124,009,181...124,022,031
JBrowse link
G Prox1 prospero homeobox 1 acts_upstream_of_or_within ISO MGI:2450311|MGI:3609548 (MGI:3607876|PMID:16170315) RGD PMID:16170315 MGI:3607876 NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183
JBrowse link
G Sox18 SRY-box transcription factor 18 acts_upstream_of_or_within ISO MGI:1856135|MGI:2178809 (MGI:3850578|PMID:19515696), (MGI:54697|PMID:291594) RGD PMID:291594 PMID:19515696 MGI:3850578 MGI:54697 NCBI chr 3:168,785,488...168,787,290
Ensembl chr 3:168,785,490...168,787,290
JBrowse link
G Svep1 sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 acts_upstream_of_or_within ISO MGI:5286317 (MGI:5913245|PMID:28179432) RGD PMID:28179432 MGI:5913245 NCBI chr 5:72,811,200...72,988,813
Ensembl chr 5:72,811,410...72,988,525
JBrowse link
G Syk spleen associated tyrosine kinase involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:3653293|PMID:12522250)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:12522250 GO_REF:0000024 GO_REF:0000107 MGI:3653293 NCBI chr17:12,604,615...12,678,437
Ensembl chr17:12,604,619...12,661,410
JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2450311|MGI:3046793 (MGI:4452526|PMID:20439995)
UniProt
RGD
PMID:20439995 GO_REF:0000024 MGI:4452526 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380
JBrowse link
G Tmem204 transmembrane protein 204 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:95561|MGI:96683 (MGI:4443218|PMID:20439428)
RGD PMID:20439428 PMID:21873635 MGI:4443218, RGD:13792537 NCBI chr10:14,076,518...14,104,849
Ensembl chr10:14,076,519...14,101,920
JBrowse link
branching involved in lymph vessel morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nfatc1 nuclear factor of activated T-cells 1 acts_upstream_of_or_within ISO MGI:2181762 (MGI:3848105|PMID:19233265) RGD PMID:19233265 MGI:3848105 NCBI chr18:74,046,421...74,156,041
Ensembl chr18:74,046,904...74,156,028
JBrowse link
G Tie1 tyrosine kinase with immunoglobulin-like and EGF-like domains 1 involved_in ISO (MGI:4439415|PMID:20223757) RGD PMID:20223757 MGI:4439415 NCBI chr 5:132,000,013...132,019,658
Ensembl chr 5:132,000,015...132,019,592
JBrowse link
lymph vessel morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pkd1 polycystin 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO MGI:3612341 (MGI:5576424|PMID:24767999) RGD PMID:24767999 MGI:5576424 NCBI chr10:13,573,779...13,621,138
Ensembl chr10:13,573,021...13,621,128
JBrowse link
G Svep1 sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 involved_in
acts_upstream_of_or_within
IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
MGI:5286317|MGI:6188639 (MGI:5913245|PMID:28179432), (MGI:6156694|PMID:28179430)
Ensembl
RGD
PMID:28179430 PMID:28179432 PMID:21873635 GO_REF:0000107 MGI:5913245 MGI:6156694, RGD:13792537 NCBI chr 5:72,811,200...72,988,813
Ensembl chr 5:72,811,410...72,988,525
JBrowse link
G Vegfa vascular endothelial growth factor A involved_in ISO (MGI:4461879|PMID:18093989) RGD PMID:18093989 MGI:4461879 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
JBrowse link
lymphangiogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin A receptor type 2B involved_in IEA
ISO
GO_REF:0000107
(MGI:4436974|PMID:19903896)
Ensembl
RGD
PMID:19903896 GO_REF:0000107 MGI:4436974 NCBI chr 8:119,138,901...119,178,477
Ensembl chr 8:119,138,812...119,170,458
JBrowse link
G Acvrl1 activin A receptor like type 1 involved_in ISO (MGI:4436974|PMID:19903896) RGD PMID:19903896 MGI:4436974 NCBI chr 7:132,239,200...132,256,592
Ensembl chr 7:132,239,729...132,256,591
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in ISO (MGI:4436974|PMID:19903896) RGD PMID:19903896 MGI:4436974 NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809
JBrowse link
G Ccbe1 collagen and calcium binding EGF domains 1 involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:19935664)
GO_REF:0000107
MGI:5007046 (MGI:5432672|PMID:21778431)
RGD
Ensembl
PMID:19935664 PMID:21778431 GO_REF:0000107 MGI:5432672 NCBI chr18:59,579,851...59,823,977 JBrowse link
G Clec14a C-type lectin domain containing 14A acts_upstream_of_or_within ISO MGI:6404416 (MGI:5881854|PMID:27991863) RGD PMID:27991863 MGI:5881854 NCBI chr 6:75,881,470...75,884,612
Ensembl chr 6:75,881,473...75,884,612
JBrowse link
G Flt4 Fms related receptor tyrosine kinase 4 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5294901|PMID:20697430)
GO_REF:0000024
(PMID:19779139)
Ensembl
RGD
UniProt
PMID:19779139 PMID:20697430 GO_REF:0000024 GO_REF:0000107 MGI:5294901 NCBI chr10:33,913,725...33,954,770
Ensembl chr10:33,913,608...33,954,770
JBrowse link
G Foxc2 forkhead box C2 involved_in ISO (PMID:12114478) RGD PMID:12114478 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737
JBrowse link
G Nfatc1 nuclear factor of activated T-cells 1 acts_upstream_of_or_within ISO MGI:103178|MGI:107163 (MGI:3848105|PMID:19233265) RGD PMID:19233265 MGI:3848105 NCBI chr18:74,046,421...74,156,041
Ensembl chr18:74,046,904...74,156,028
JBrowse link
G Pdpn podoplanin involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2657021 (MGI:3522394|PMID:12853470)
UniProt
RGD
PMID:12853470 GO_REF:0000024 MGI:3522394 NCBI chr 5:155,601,691...155,635,656
Ensembl chr 5:155,601,691...155,635,656
JBrowse link
G Ppp3cb protein phosphatase 3 catalytic subunit beta involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:102469|MGI:103178 (MGI:3848104|PMID:19233846)
Ensembl
RGD
PMID:19233846 GO_REF:0000107 MGI:3848104 NCBI chr15:3,759,950...3,804,976
Ensembl chr15:3,760,030...3,804,981
JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:12412020) RGD PMID:12412020 NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183
JBrowse link
G Ptpn14 protein tyrosine phosphatase, non-receptor type 14 involved_in IBA
ISO
PMID:21873635
(MGI:4939987|PMID:20826270)
(PMID:20826270)
RGD PMID:20826270 PMID:21873635 MGI:4939987, RGD:13792537 NCBI chr13:101,268,258...101,420,508
Ensembl chr13:101,268,416...101,414,088
JBrowse link
G Sox18 SRY-box transcription factor 18 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2178809 (MGI:3828192|PMID:18931657)
(PMID:12740761)
RGD PMID:12740761 PMID:18931657 PMID:21873635 MGI:3828192, RGD:13792537 NCBI chr 3:168,785,488...168,787,290
Ensembl chr 3:168,785,490...168,787,290
JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO MGI:102469|MGI:107163 (MGI:3848105|PMID:19233265) RGD PMID:19233265 MGI:3848105 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
JBrowse link
lymphatic endothelial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin A receptor type 2B involved_in IEA
ISO
GO_REF:0000107
(MGI:4436974|PMID:19903896)
Ensembl
RGD
PMID:19903896 GO_REF:0000107 MGI:4436974 NCBI chr 8:119,138,901...119,178,477
Ensembl chr 8:119,138,812...119,170,458
JBrowse link
G Acvrl1 activin A receptor like type 1 involved_in ISO (PMID:19903896)
(MGI:4436974|PMID:19903896)
RGD PMID:19903896 MGI:4436974 NCBI chr 7:132,239,200...132,256,592
Ensembl chr 7:132,239,729...132,256,591
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in ISO (MGI:4436974|PMID:19903896) RGD PMID:19903896 MGI:4436974 NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809
JBrowse link
G Prox1 prospero homeobox 1 involved_in
acts_upstream_of_or_within
ISO (PMID:12198161)
MGI:2182767|MGI:3609548 (MGI:3820329|PMID:19056883)
RGD PMID:12198161 PMID:19056883 MGI:3820329 NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183
JBrowse link
G Sox18 SRY-box transcription factor 18 acts_upstream_of_or_within ISO MGI:2178809 (MGI:3828192|PMID:18931657) RGD PMID:18931657 MGI:3828192 NCBI chr 3:168,785,488...168,787,290
Ensembl chr 3:168,785,490...168,787,290
JBrowse link
G Tie1 tyrosine kinase with immunoglobulin-like and EGF-like domains 1 acts_upstream_of_or_within ISO (MGI:4439415|PMID:20223757) RGD PMID:20223757 MGI:4439415 NCBI chr 5:132,000,013...132,019,658
Ensembl chr 5:132,000,015...132,019,592
JBrowse link
lymphatic endothelial cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nr2f2 nuclear receptor subfamily 2, group F, member 2 involved_in ISO (PMID:18815287) RGD PMID:18815287 NCBI chr 1:124,008,282...124,022,521
Ensembl chr 1:124,009,181...124,022,031
JBrowse link
G Pdpn podoplanin involved_in ISS
ISO
GO_REF:0000024
(MGI:4453945|PMID:20110424)
UniProt
RGD
PMID:20110424 GO_REF:0000024 MGI:4453945 NCBI chr 5:155,601,691...155,635,656
Ensembl chr 5:155,601,691...155,635,656
JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:18815287) RGD PMID:18815287 NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183
JBrowse link
lymphatic endothelial cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lgals12 galectin 12 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:204,832,065...204,842,759
Ensembl chr 1:204,832,065...204,842,759
JBrowse link
G Lgals8 galectin 8 involved_in IBA
IEA
ISS
ISO
PMID:21873635
GO_REF:0000107
GO_REF:0000024
(PMID:19268462)
Ensembl
UniProt
RGD
PMID:19268462 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr17:58,024,652...58,052,764
Ensembl chr17:58,028,105...58,052,764
JBrowse link
negative regulation of lymphangiogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epha2 Eph receptor A2 acts_upstream_of_or_within ISO MGI:3040415 (MGI:3847147|PMID:19443703) RGD PMID:19443703 MGI:3847147 NCBI chr 5:153,605,644...153,634,115
Ensembl chr 5:153,605,644...153,634,117
JBrowse link
G Foxc1 forkhead box C1 involved_in ISO (MGI:5314489|PMID:22171010) RGD PMID:22171010 MGI:5314489 NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803
JBrowse link
G Vash1 vasohibin 1 acts_upstream_of_or_within ISO UniProtKB:P97953|UniProtKB:Q00731 (PMID:20133819) RGD PMID:20133819 NCBI chr 6:106,330,374...106,345,740
Ensembl chr 6:106,329,123...106,345,726
JBrowse link
positive regulation of lymphangiogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccbe1 collagen and calcium binding EGF domains 1 involved_in ISO (MGI:5568630|PMID:24552833) RGD PMID:24552833 MGI:5568630 NCBI chr18:59,579,851...59,823,977 JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO (MGI:4439256|PMID:20133819) RGD PMID:20133819 MGI:4439256 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
JBrowse link
G Vegfc vascular endothelial growth factor C acts_upstream_of_or_within
involved_in
ISO (MGI:4439256|PMID:20133819)
(MGI:5568630|PMID:24552833)
RGD PMID:20133819 PMID:24552833 MGI:4439256 MGI:5568630 NCBI chr16:37,712,408...37,827,657
Ensembl chr16:37,712,262...37,827,848
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19541
    developmental process 6920
      anatomical structure development 6337
        lymph vessel development 30
          lymph vessel morphogenesis + 23
          lymphatic endothelial cell differentiation + 8
          venous endothelial cell migration involved in lymph vessel development 0
Path 2
Term Annotations click to browse term
  biological_process 19541
    developmental process 6920
      anatomical structure development 6337
        multicellular organism development 5765
          system development 5408
            circulatory system development 1249
              vasculature development 788
                lymph vessel development 30
                  lymph vessel morphogenesis + 23
                  lymphatic endothelial cell differentiation + 8
                  venous endothelial cell migration involved in lymph vessel development 0
paths to the root