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ONTOLOGY REPORT - ANNOTATIONS

Term:retina homeostasis
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Accession:GO:0001895 term browser browse the term
Definition:A tissue homeostatic process involved in the maintenance of an internal equilibrium within the retina of the eye, including control of cellular proliferation and death and control of metabolic function.


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retina homeostasis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 acts_upstream_of_or_within ISO MGI:3054784|MGI:3054793 (PMID:15365173), (PMID:15365178) RGD PMID:15365173 PMID:15365178 NCBI chr10:56,655,693...56,664,922
Ensembl chr10:56,655,693...56,664,922 		JBrowse link
G Atp1b2 ATPase Na+/K+ transporting subunit beta 2 acts_upstream_of_or_within ISO (MGI:2159503|PMID:8793730)
(PMID:8793730)		 RGD PMID:8793730 MGI:2159503 NCBI chr10:54,318,698...54,324,933
Ensembl chr10:54,318,701...54,324,933 		JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within ISO MGI:3055491 (PMID:15322545) RGD PMID:15322545 NCBI chr 1:202,184,812...202,204,118
Ensembl chr 1:202,186,125...202,204,086 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO MGI:3045473|MGI:3055492 (PMID:15173597), (PMID:15322545) RGD PMID:15173597 PMID:15322545 NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607 		JBrowse link
G Ccdc66 coiled-coil domain containing 66 involved_in ISO (PMID:19777273) RGD PMID:19777273 NCBI chr16:2,662,125...2,694,031
Ensembl chr16:2,662,131...2,694,023 		JBrowse link
G Cdh3 cadherin 3 involved_in ISO (PMID:23143461) RGD PMID:23143461 NCBI chr19:34,393,596...34,444,084
Ensembl chr19:34,393,727...34,444,084 		JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 involved_in ISO
IBA		 (PMID:15557452)
GO_REF:0000033		 RGD
GO_Central		 PMID:15557452 GO_REF:0000033 NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173 		JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (MGI:5461109|PMID:23001562) RGD PMID:23001562 MGI:5461109 NCBI chr 3:21,542,138...21,564,876
Ensembl chr 3:21,542,221...21,563,294 		JBrowse link
G Poc1b POC1 centriolar protein B involved_in IEA
ISO		 GO_REF:0000107
(PMID:25044745)		 Ensembl
RGD		 PMID:25044745 GO_REF:0000107 NCBI chr 7:33,924,112...34,025,908
Ensembl chr 7:33,924,189...34,025,903 		JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 involved_in ISO (PMID:15557452) RGD PMID:15557452 NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403 		JBrowse link
G Slc28a2 solute carrier family 28 member 2 involved_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:16487924 GO_REF:0000033, RGD:2317453 NCBI chr 3:109,324,815...109,387,702
Ensembl chr 3:109,366,996...109,387,702 		JBrowse link
G Slc28a3 solute carrier family 28 member 3 IDA RGD PMID:16487924 RGD:2317453 NCBI chr17:6,062,563...6,112,965
Ensembl chr17:6,062,549...6,114,038 		JBrowse link
G Sod1 superoxide dismutase 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:1857873 (PMID:16844785)		 UniProt
RGD		 PMID:16844785 GO_REF:0000024 NCBI chr11:29,456,673...29,462,249
Ensembl chr11:29,456,558...29,462,249 		JBrowse link
G Tulp1 TUB like protein 1 involved_in ISO (PMID:15557452) RGD PMID:15557452 NCBI chr20:6,412,170...6,424,103
Ensembl chr20:6,412,171...6,424,073 		JBrowse link
G Wdr36 WD repeat domain 36 acts_upstream_of_or_within ISO (PMID:20631153) RGD PMID:20631153 NCBI chr18:24,473,657...24,501,773
Ensembl chr18:24,473,663...24,508,092 		JBrowse link
G Whrn whirlin involved_in IEA
ISO
ISS		 GO_REF:0000107
(MGI:4454934|PMID:20502675)
(PMID:17171570)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:17171570 PMID:20502675 GO_REF:0000024 GO_REF:0000107 MGI:4454934 NCBI chr 5:76,828,308...76,911,945
Ensembl chr 5:76,828,301...76,912,223 		JBrowse link
homeostasis of number of retina cells term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elp6 elongator acetyltransferase complex subunit 6 acts_upstream_of_or_within ISO (PMID:27715390) RGD PMID:27715390 NCBI chr 8:110,280,059...110,295,070
Ensembl chr 8:110,279,979...110,295,067 		JBrowse link
G Epg5 ectopic P-granules 5 autophagy tethering factor acts_upstream_of_or_within ISO (PMID:27715390) RGD PMID:27715390 NCBI chr18:71,403,990...71,502,079
Ensembl chr18:71,404,010...71,501,502 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO MGI:6163746 (PMID:23580486) RGD PMID:23580486 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO MGI:2136645 (PMID:22627278) RGD PMID:22627278 NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377 		JBrowse link
photoreceptor cell maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 acts_upstream_of_or_within ISO MGI:1857860 (PMID:11431429) RGD PMID:11431429 NCBI chr 2:210,164,813...210,302,069
Ensembl chr 2:210,164,813...210,302,069 		JBrowse link
G Adgrv1 adhesion G protein-coupled receptor V1 involved_in ISO (PMID:14740321) RGD PMID:14740321 NCBI chr 2:11,331,434...11,911,713
Ensembl chr 2:11,331,442...11,911,688 		JBrowse link
G Atp1b2 ATPase Na+/K+ transporting subunit beta 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:69165|PMID:7525597)
(PMID:7525597)		 Ensembl
RGD		 PMID:7525597 GO_REF:0000107 MGI:69165 NCBI chr10:54,318,698...54,324,933
Ensembl chr10:54,318,701...54,324,933 		JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 involved_in ISO (PMID:17980398) RGD PMID:17980398 NCBI chr 1:202,184,812...202,204,118
Ensembl chr 1:202,186,125...202,204,086 		JBrowse link
G Bbs10 Bardet-Biedl syndrome 10 involved_in ISO (PMID:17980398) RGD PMID:17980398 NCBI chr 7:46,751,028...46,754,132
Ensembl chr 7:46,750,993...46,754,141 		JBrowse link
G Bbs12 Bardet-Biedl syndrome 12 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:5444297 (PMID:22869374), (PMID:22958920)		 GO_Central
RGD		 PMID:22869374 PMID:22958920 GO_REF:0000033 NCBI chr 2:120,203,396...120,221,024
Ensembl chr 2:120,203,428...120,219,255 		JBrowse link
G Bbs2 Bardet-Biedl syndrome 2 acts_upstream_of_or_within ISO MGI:3521669 (PMID:15539463) RGD PMID:15539463 NCBI chr19:10,909,653...10,944,998
Ensembl chr19:10,909,619...10,944,993 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO MGI:2384917|MGI:3045473|MGI:3055492 (PMID:16794820), (PMID:17591906), (PMID:20398886), (PMID:21444805), (PMID:23943788) RGD PMID:16794820 PMID:17591906 PMID:20398886 PMID:21444805 PMID:23943788 NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607 		JBrowse link
G Bsg basigin involved_in ISO
ISS		 (PMID:25957687)
GO_REF:0000024
(MGI:6436439|PMID:25957687)		 RGD
UniProt		 PMID:25957687 GO_REF:0000024 MGI:6436439 NCBI chr 7:9,993,170...10,000,387
Ensembl chr 7:9,993,170...10,000,387 		JBrowse link
G Cdh23 cadherin-related 23 involved_in ISO
IEA		 (PMID:16679490)
GO_REF:0000107		 RGD
Ensembl		 PMID:16679490 GO_REF:0000107 NCBI chr20:28,240,643...28,622,490
Ensembl chr20:28,240,645...28,622,419 		JBrowse link
G Cdhr1 cadherin-related family member 1 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:20805371)
MGI:3046299 (PMID:11738025)
GO_REF:0000107		 RGD
Ensembl		 PMID:11738025 PMID:20805371 GO_REF:0000107 NCBI chr16:12,843,436...12,863,321
Ensembl chr16:12,843,437...12,863,396 		JBrowse link
G Cep290 centrosomal protein 290 acts_upstream_of_or_within ISO MGI:2143311|MGI:3624136 (PMID:23943788) RGD PMID:23943788 NCBI chr 7:35,310,071...35,399,388
Ensembl chr 7:35,310,199...35,399,392 		JBrowse link
G Cib2 calcium and integrin binding family member 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5487486|PMID:23023331)		 UniProt
RGD		 PMID:23023331 GO_REF:0000024 MGI:5487486 NCBI chr 8:54,930,265...54,947,157 JBrowse link
G Clcn3 chloride voltage-gated channel 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2183297 (PMID:11182090)		 Ensembl
RGD		 PMID:11182090 GO_REF:0000107 NCBI chr16:29,127,152...29,200,133
Ensembl chr16:29,127,419...29,200,119 		JBrowse link
G Cln8 CLN8, transmembrane ER and ERGIC protein acts_upstream_of_or_within ISO MGI:1856959 (PMID:15565184), (PMID:9151333) RGD PMID:9151333 PMID:15565184 NCBI chr16:74,749,662...74,759,553
Ensembl chr16:74,749,662...74,759,774 		JBrowse link
G Clrn1 clarin 1 involved_in ISO
IEA		 (PMID:15521980)
GO_REF:0000107		 RGD
Ensembl		 PMID:15521980 GO_REF:0000107 NCBI chr 2:143,084,030...143,130,948
Ensembl chr 2:143,084,030...143,130,948 		JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 acts_upstream_of_or_within ISO MGI:3527896 (PMID:15634774) RGD PMID:15634774 NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (PMID:17234588), (PMID:25147295) RGD PMID:17234588 PMID:25147295 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (MGI:5461109|PMID:23001562) RGD PMID:23001562 MGI:5461109 NCBI chr 3:21,542,138...21,564,876
Ensembl chr 3:21,542,221...21,563,294 		JBrowse link
G Crocc ciliary rootlet coiled-coil, rootletin acts_upstream_of_or_within ISO MGI:3580447 (PMID:15870283) RGD PMID:15870283 NCBI chr 5:153,320,962...153,363,734
Ensembl chr 5:153,320,962...153,363,578 		JBrowse link
G Dram2 DNA damage regulated autophagy modulator 2 involved_in
acts_upstream_of_or_within		 ISO
IBA
ISS		 (PMID:25983245)
(PMID:37691820)
GO_REF:0000033
(MGI:5705208|PMID:25983245)
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:25983245 PMID:37691820 GO_REF:0000024 GO_REF:0000033 MGI:5705208 NCBI chr 2:194,035,624...194,064,415
Ensembl chr 2:194,035,818...194,063,403 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within ISO MGI:1932102 (PMID:17145777) RGD PMID:17145777 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587 		JBrowse link
G Esrrb estrogen-related receptor beta involved_in ISS
ISO		 GO_REF:0000024
(MGI:4457950|PMID:20534447)		 UniProt
RGD		 PMID:20534447 GO_REF:0000024 MGI:4457950 NCBI chr 6:106,007,701...106,163,136
Ensembl chr 6:106,008,095...106,160,791 		JBrowse link
G Iqcb1 IQ motif containing B1 involved_in ISO (PMID:15723066) RGD PMID:15723066 NCBI chr11:63,905,595...63,960,141
Ensembl chr11:63,905,590...63,960,093 		JBrowse link
G Lca5 lebercilin LCA5 acts_upstream_of_or_within ISS
ISO		 GO_REF:0000024
(PMID:21606596)		 UniProt
RGD		 PMID:21606596 GO_REF:0000024 NCBI chr 8:84,307,696...84,375,025
Ensembl chr 8:84,317,659...84,374,956 		JBrowse link
G Mak male germ cell-associated kinase involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:2179972 (PMID:21148103)		 UniProt
Ensembl
RGD		 PMID:21148103 GO_REF:0000024 GO_REF:0000107 NCBI chr17:23,683,753...23,731,125
Ensembl chr17:23,693,878...23,730,001 		JBrowse link
G Map1a microtubule-associated protein 1A acts_upstream_of_or_within ISO MGI:109571|MGI:2651573 (PMID:22323461) RGD PMID:22323461 NCBI chr 3:108,263,217...108,283,936
Ensembl chr 3:108,263,151...108,282,899 		JBrowse link
G Mdm1 Mdm1 nuclear protein involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 7:53,729,603...53,766,034
Ensembl chr 7:53,729,610...53,766,034 		JBrowse link
G Mkks MKKS centrosomal shuttling protein acts_upstream_of_or_within ISO MGI:3526444|MGI:3608879 (PMID:15772095), (PMID:16170314) RGD PMID:15772095 PMID:16170314 NCBI chr 3:124,201,877...124,221,142
Ensembl chr 3:124,201,877...124,220,162 		JBrowse link
G Nphp3 nephrocystin 3 involved_in ISO (PMID:12872122) RGD PMID:12872122 NCBI chr 8:104,621,908...104,662,383
Ensembl chr 8:104,621,864...104,662,383 		JBrowse link
G Nphp4 nephrocystin 4 acts_upstream_of_or_within ISO MGI:3032515 (PMID:21078623) RGD PMID:21078623 NCBI chr 5:162,986,157...163,073,708
Ensembl chr 5:162,988,370...163,073,706 		JBrowse link
G Nxnl1 nucleoredoxin-like 1 involved_in ISO (PMID:25957687)
(MGI:6436439|PMID:25957687)		 RGD PMID:25957687 MGI:6436439 NCBI chr16:18,270,604...18,279,797
Ensembl chr16:18,262,688...18,279,987 		JBrowse link
G Nxnl2 nucleoredoxin-like 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:14,031,151...14,035,897
Ensembl chr17:14,031,153...14,036,189 		JBrowse link
G Pcdh15 protocadherin related 15 involved_in ISO (PMID:11398101) RGD PMID:11398101 NCBI chr20:13,997,094...15,496,446
Ensembl chr20:13,963,565...15,494,719 		JBrowse link
G Pde6a phosphodiesterase 6A acts_upstream_of_or_within ISO MGI:4867884 (PMID:22183357) RGD PMID:22183357 NCBI chr18:54,676,863...54,748,640
Ensembl chr18:54,676,863...54,748,816 		JBrowse link
G Prom1 prominin 1 involved_in ISO
IBA		 (PMID:18654668)
GO_REF:0000033		 RGD
GO_Central		 PMID:18654668 GO_REF:0000033 NCBI chr14:66,989,545...67,094,534
Ensembl chr14:66,990,160...67,094,527 		JBrowse link
G Rho rhodopsin involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:6508517|PMID:32312889)
MGI:5609882 (PMID:22183357)
(PMID:32312889)		 Ensembl
RGD		 PMID:22183357 PMID:32312889 GO_REF:0000107 MGI:6508517 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
G Rp1 RP1, axonemal microtubule associated involved_in ISO (MGI:3604930|PMID:16126734) RGD PMID:16126734 MGI:3604930 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Rp1l1 RP1 like 1 involved_in ISO (PMID:23281133)
(PMID:19657028)
(MGI:4353917|PMID:19657028)		 RGD PMID:19657028 PMID:23281133 MGI:4353917 NCBI chr15:38,259,907...38,271,269
Ensembl chr15:38,259,928...38,270,316 		JBrowse link
G Slc2a1 solute carrier family 2 member 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:132,717,196...132,745,416
Ensembl chr 5:132,717,196...132,745,416 		JBrowse link
G Spata7 spermatogenesis associated 7 involved_in IEA
IBA
ISS
ISO		 GO_REF:0000107
GO_REF:0000033
GO_REF:0000024
(MGI:5608598|PMID:25398945)		 Ensembl
GO_Central
UniProt
RGD		 PMID:25398945 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 MGI:5608598 NCBI chr 6:117,879,828...117,925,284
Ensembl chr 6:117,879,823...117,925,284 		JBrowse link
G Tub TUB bipartite transcription factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857081 (PMID:10629044)		 Ensembl
RGD		 PMID:10629044 GO_REF:0000107 NCBI chr 1:163,008,198...163,030,958
Ensembl chr 1:162,951,931...163,026,812 		JBrowse link
G Tulp1 TUB like protein 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:4397555|PMID:19218615)
(PMID:19218615)
MGI:1857081|MGI:1859921|MGI:4867883 (PMID:10549638), (PMID:10607826), (PMID:17525220), (PMID:22183357)		 RGD PMID:10549638 PMID:10607826 PMID:17525220 PMID:19218615 PMID:22183357 MGI:4397555 NCBI chr20:6,412,170...6,424,103
Ensembl chr20:6,412,171...6,424,073 		JBrowse link
G Ush1c USH1 protein network component harmonin involved_in ISO (PMID:11398101) RGD PMID:11398101 NCBI chr 1:96,695,303...96,743,671
Ensembl chr 1:96,695,307...96,743,671 		JBrowse link
G Ush1g USH1 protein network component sans involved_in ISO (PMID:11398101) RGD PMID:11398101 NCBI chr10:100,559,721...100,563,590
Ensembl chr10:100,557,629...100,563,590 		JBrowse link
G Ush2a usherin involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:10090909)
MGI:3702040 (PMID:17360538)
GO_REF:0000107		 RGD
Ensembl		 PMID:10090909 PMID:17360538 GO_REF:0000107 NCBI chr13:99,837,445...100,503,935
Ensembl chr13:99,837,445...100,503,922 		JBrowse link
G Usp45 ubiquitin specific peptidase 45 involved_in ISO (MGI:6383248|PMID:30573563)
(PMID:30573563)		 RGD PMID:30573563 MGI:6383248 NCBI chr 5:35,318,621...35,392,090
Ensembl chr 5:35,318,635...35,389,420 		JBrowse link
retina blood vessel maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO MGI:2676199 (PMID:28575130) RGD PMID:28575130 NCBI chr  X:5,796,487...5,820,934
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Vstm4 V-set and transmembrane domain containing 4 acts_upstream_of_or_within ISO MGI:6393534 (PMID:31698979) RGD PMID:31698979 NCBI chr16:8,120,336...8,200,272
Ensembl chr16:8,120,336...8,200,269 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20133
    multicellular organismal process 8872
      multicellular organismal-level homeostasis 959
        tissue homeostasis 292
          retina homeostasis 63
            homeostasis of number of retina cells 4
            photoreceptor cell maintenance 47
            retina blood vessel maintenance 2
Path 2
Term Annotations click to browse term
  biological_process 20133
    multicellular organismal process 8872
      multicellular organismal-level homeostasis 959
        anatomical structure homeostasis 292
          tissue homeostasis 292
            retina homeostasis 63
              homeostasis of number of retina cells 4
              photoreceptor cell maintenance 47
              retina blood vessel maintenance 2
paths to the root